Os04g0641000

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Revision as of 11:31, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0641000| Description = Similar to DNA-directed RNA polymerase, subunit B (RNA polymerase IV second- largest subunit)| Version = NM_001060576...")
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Gene Name

Os04g0641000

Description

Similar to DNA-directed RNA polymerase, subunit B (RNA polymerase IV second- largest subunit)

Version

NM_001060576.1 GI:115460881 GeneID:4337169

Length

9040 bp

Definition

Oryza sativa Japonica Group Os04g0641000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:33008418..33017457

Sequence Coding Region

33008505..33008541,33010151..33010755,33011330..33011536,33012315..33013195,33013270..33013561
,33014286..33015302,33015963..33016234,33016621..33017122

Expression

GEO Profiles:Os04g0641000

Genome Context

<gbrowseImage1> name=NC_008397:33008418..33017457 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:33008418..33017457 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ggtttcgccctccggcgacgcccctcctctccaccaggctattccctcgaagttatggaagagccatcaaaggacaatgggcaatcatcctgtgttgttgatcctgagctggaacctatgatgctggatgatgctagagagggagtatcccatacattggatgatgcaaatgggcattcttctatggatgttgacagaggatgccattctatggacaccacgagatcatctctgggtgatgatggtaaaggaaagcgcgactcatatgcccaaattccagtcgacatgagtattccaagcctagaaaagttctgcaaagaagcatcaaggtccttctttgatgagattggtctgatcagccatcagataaattcttataacgagtttgtctcacatgggctccaggaactttttgattctctgggggaagtgactgtggagcctagttatgatccttcaaatagaggaccaggtggctggagacatgctatcatcaagtttggaagagtgcaactagaagaaccagtattttggtctcatggatgtgatattgatgaacaatcgctcaaactgaagccaaggcatgctcgcctacagaatatgacatattcttccaaaatgaaagtggaagttcatttccaggtttactctatggagaagagtgacaaggctaaaacagggaatgataaatttggttacaagcgaaacattattaatgaaacatattatataaatattggccgccttccagttatggttatgtcaaatttatgttggctccacaaactcaaggaaagtgattgccaatttgattctggtggatactttttgatcaagggaatggagaaggtattcattgcgcaagagcaaaaatgtctgaccaggatttgggttgaggaccgtccttgctggatggtctctttcttgtctccaatcagaagaaggcgcatatatataaaactaattgattctgcaaataatgaagatgccagtggggggaagatcatttccatctcctttttgtatgcaaatatgccaatatggttgatgttttttgcactaggcatatcatcagataaggatatctttgatgttataaatatggaagactgtgatgcttgtgttatcaacacaattaccgcaactattaaagaatcagatgaattgtgtgaaggcttccgtaaatcagataaagcccggcagtatgttgacgaattgattaagaattcaaaatttcctcctgcagagccatttgatgattatattgctaaatacctcttccccagcataagtgggaaccggaacaaagcacttttcttaggttacatggtcaaatgccttttaatggctttcactgggaagcgcaaatgtgacaacaaggatgatttccggaacaagaggttggacctagctggtgaattgcttggaagagaactccgtgcgcatattaggcatgcagagagactcatggttaaggccttgcagagagatttaaatagtgagcgtgagttacaagaatttgatcattatctggatgcttcaattattaccaatggtctaaaccgtgccttctctactggttcttggtgccatccttacaaaagaaatgaaagatgcgcaggaattgttgcgacactaaggagaacaaatccgcttcagatgatctcggacttgaggaaaactcgccaacgagttgcttatgctgggaaagccggtgatgcaagatatccaaatccatcctactggggaaaattgtgttttatgtccactcctgatggtgaaaactgtggacttgtgaaaaatctagctgttacagctactgttagctccagagtagcaccgccattgattgacaggttcatttcttgtggaatgaataagctgcatgagattcctacagaggaggttcctagaatggataaaatcttcctgaatggggattgggtggggtcctgtagtgacccggcttcatttgtcttgcgtttaaggtgcatgagacgcagtggtctgatagatccacaggttgagataaaacgggacaagcaccaaagggaagttcgggtgttttctgatgcaggtcgaatcctcagaccgcttcttgtggttgaaaatctcaataaaattaggagaccgaagggcagttcatattcttttcagtggttaatgcaacaagaaataattgagtttattggcgttgaagaagaggaagatatacgaagtgcctggggcatcaggaacctatttgagagtgaagaagaggctcccatggtaaaaatgaataaagcagaggatgtcttcaatgttaagaggaagatcggaggggaggtttcaggttatacgcactgtgagctggatctttcttttctgctaggattaagttgtggtattatcccttttgcgaaccacaattttgctcggagggttctttaccaatctgaaaaacattcacagcaagctattggatactctacaacaaatccgcacatcagagttgataccctttcccatcaactttactatcctcagagaccccttttcaaaacagtgatagctgactgcattggtagatcagaatatacttttgggagaaaggatgactttgccagaccagagtatttcaatggccaaaatgcaatagtggcagtgaatgttcatcaggggtttaatcaagaagattccgtggttatgaatagggcttctcttgagcggggtatgtttaggactgagcacttcaggaactataaggctgaagtagagaacaaaggtgggccaggtggcaacaaacgactaaaaatgaaggataagattgacttcggtaaaatgcaaagcaagagaggacgtgttgacaatcttgacgatgatggattaccatatgtcggtgcaagtcttcagagtggtgacattgtcattggaaaggtctcagaatctggtgaagatcatagtattaagctgaagcatactgaaaagggtatggtgcagagggtattactttcagctaatgatgaggggaagaactttgcagttgttactctaagacaggttcgatcaccttgccttggagataaattttccagcatgcatggccagaaaggtgtcgttggttttctagaatctcaggagaatttcccatttacttaccaaggaatagtaccagatattgtgataaatccacatgcatttcctacccgtcaaactccaggccagcttcttgaagctgctttggggaaaggaattgccctcggtggtacaatgagatatgctacaccattcacaacagcatcgtttgatgtgatcacagaccaattacacaaggctggattttcaagatggggagctgaaagtgttctcaatggccggactggtgaaaggatgcactcattgattttcatgggtcctactttttaccagaggctgatacacatggcagaagataaggtcaagttcaggaacacggggccagtgcaccccctaacacggcaacctgttgctgacaggaagaggtttgggggagtgaagtttggagaaatggagcgtgactgcctcctcgcccatggtgcagcagccaacctccatgagcggctcttcatgcttagtgacttctcgcagatgcacgtctgccagacgtgcgaacgtgtggcgaatgttatcatgaggcctgtcccaggaggaaagaagatccgggggccatactgtgggttctgccgctcttctgaaaacatagtaaggatcaatgtgccctacggcgcaaagctgctctatcaagagctattcagcatggggatctgccttagatttgagacggaagtctgctag</cdnaseq>

Protein Sequence

<aaseq>GFALRRRPSSPPGYSLEVMEEPSKDNGQSSCVVDPELEPMMLDD AREGVSHTLDDANGHSSMDVDRGCHSMDTTRSSLGDDGKGKRDSYAQIPVDMSIPSLE KFCKEASRSFFDEIGLISHQINSYNEFVSHGLQELFDSLGEVTVEPSYDPSNRGPGGW RHAIIKFGRVQLEEPVFWSHGCDIDEQSLKLKPRHARLQNMTYSSKMKVEVHFQVYSM EKSDKAKTGNDKFGYKRNIINETYYINIGRLPVMVMSNLCWLHKLKESDCQFDSGGYF LIKGMEKVFIAQEQKCLTRIWVEDRPCWMVSFLSPIRRRRIYIKLIDSANNEDASGGK IISISFLYANMPIWLMFFALGISSDKDIFDVINMEDCDACVINTITATIKESDELCEG FRKSDKARQYVDELIKNSKFPPAEPFDDYIAKYLFPSISGNRNKALFLGYMVKCLLMA FTGKRKCDNKDDFRNKRLDLAGELLGRELRAHIRHAERLMVKALQRDLNSERELQEFD HYLDASIITNGLNRAFSTGSWCHPYKRNERCAGIVATLRRTNPLQMISDLRKTRQRVA YAGKAGDARYPNPSYWGKLCFMSTPDGENCGLVKNLAVTATVSSRVAPPLIDRFISCG MNKLHEIPTEEVPRMDKIFLNGDWVGSCSDPASFVLRLRCMRRSGLIDPQVEIKRDKH QREVRVFSDAGRILRPLLVVENLNKIRRPKGSSYSFQWLMQQEIIEFIGVEEEEDIRS AWGIRNLFESEEEAPMVKMNKAEDVFNVKRKIGGEVSGYTHCELDLSFLLGLSCGIIP FANHNFARRVLYQSEKHSQQAIGYSTTNPHIRVDTLSHQLYYPQRPLFKTVIADCIGR SEYTFGRKDDFARPEYFNGQNAIVAVNVHQGFNQEDSVVMNRASLERGMFRTEHFRNY KAEVENKGGPGGNKRLKMKDKIDFGKMQSKRGRVDNLDDDGLPYVGASLQSGDIVIGK VSESGEDHSIKLKHTEKGMVQRVLLSANDEGKNFAVVTLRQVRSPCLGDKFSSMHGQK GVVGFLESQENFPFTYQGIVPDIVINPHAFPTRQTPGQLLEAALGKGIALGGTMRYAT PFTTASFDVITDQLHKAGFSRWGAESVLNGRTGERMHSLIFMGPTFYQRLIHMAEDKV KFRNTGPVHPLTRQPVADRKRFGGVKFGEMERDCLLAHGAAANLHERLFMLSDFSQMH VCQTCERVANVIMRPVPGGKKIRGPYCGFCRSSENIVRINVPYGAKLLYQELFSMGIC LRFETEVC</aaseq>

Gene Sequence

<dnaseqindica>88..124#1734..2338#2913..3119#3898..4778#4853..5144#5869..6885#7546..7817#8204..8705#gccagaacccttctcccccctcttcactctccccggaagcatcgctcgcacgcatcggacgccggaatccccgcctccggcgactagggtttcgccctccggcgacgcccctcctctccaccaggtacattccccctcccgtgtgacgggggctctggtgaggagccccgtccaacatccgcccccctcccctcaatcccctcctcctccccccatttatttctcgcgggttgagagctccgtgtgctccggcgaggtggctcttccacgagggtcgtttacaccctgtcgcgagtgggttttcgatgggatgggaggaggagtagggtaggggagcatgcacgttttcatctgggtggctgggtgggtggattgcctaggtcggctcggtcggcgcggagtaggggaggagcaggggagaagccggagcacgtctcgtagatcgagattccggggtaggaggttgaggctgcggcggggggtcggaggcagagatcttcgaacgattttgttcctgatggtcatctccctcgccgctttattaagactggcgtatgttggtatctttctggcaaacctaaccttgttgggttgctgaggccgctctactgcaatggcgtctatcagtaattaatccaaatctgtctttctgggatggaagggtgtgccaaatcgtccacttttttgtggatttattagtgatttgtttattcgaactcttgatgctgccagtacctttagttcctgtcatgtgatgattgagagctatggtgtaaattgtctgacatattttgtgccaggatgagtgatggcctttaattctgttatttagcggagtagtacatattgagataattcttttttcgcttatacagttctgttaaacaaattaagggtacagctactctgatttgttcctttgctagttttgtgtcacctagtgaatcttaggctgaatgcttcttttactgatgtgctgagtttgaaatacctatccttttaagaaaacactgtatgcgggcgagtgtatgtgcacacattgcgcgtgagtttacgtgtaccccatgcacgtaaattcaaggataaattccttttatatgactgaaagttaatccatttccttatttggcactcattctctcagtgccatgtgggtctagggcccacatgtcagtgagccatgagacatcaatggcaatcaatggactctgtagaattttcagtggaaaaaggggatggccacaaagttcaaggatttctatttctagtgcttcaggggtgaacatgccaatgttcatgggtgttcgggtaaatactcacatgtttaggaaacagcgtgcatcaatccacaaggctctgctctgttggttaccaggcgtacacatctgtactgcaggttctgggtttgattcttggtttccagtcattcctattctttttttttgggggtggggccgcgcgggggaggggggtgacatcttttttcttcttgtttttttgttaggatttcaatagtttatttcatcctcgtattagtgctattgtgctaagtctcaatatggtatctctactatgaaaaatatttaatttaatttttccattaatataatgatactagttatatgtttttattaaaccttgaatacccaacctgcacattctgcttctgccactgcttgaatgtttgctatctagttagatggtttttgtgattgtactgcactgtttgctaggctattccctcgaagttatggaagagccatcaaaggacaatgggcaatcatcctgtgttgttgatcctgagctggaacctatgatgctggatgatgctagagagggagtatcccatacattggatgatgcaaatgggcattcttctatggatgttgacagaggatgccattctatggacaccacgagatcatctctgggtgatgatggtaaaggaaagcgcgactcatatgcccaaattccagtcgacatgagtattccaagcctagaaaagttctgcaaagaagcatcaaggtccttctttgatgagattggtctgatcagccatcagataaattcttataacgagtttgtctcacatgggctccaggaactttttgattctctgggggaagtgactgtggagcctagttatgatccttcaaatagaggaccaggtggctggagacatgctatcatcaagtttggaagagtgcaactagaagaaccagtattttggtctcatggatgtgatattgatgaacaatcgctcaaactgaagccaaggcatgctcgcctacagaatatgacatattcttccaaaatgaaagtggaagttcatttccaggtcagggttcttattgttattttctacactaaatatttacttttatgccataatttgttgaatgccatgagcacaaacggtataagcaatgcaaaaaaaaggtagctgtaaatgcttatatgtgctcagcataattcctttttctactttttgagcgctgtgtacaacacacaatcaattcctgttctcctacgcttagcttgtaaaagtgtgaacatcacgtgacaatttgtccatccaccgaacatcacctgaagaatatagaataaaatagtccacttataagcgtataacatgaaatggagcagtcaaggatcagatgggtgattagtgtttcttgagctgctccacagtcagcagcatgcgctgttgaataatgtatggtactgtttcagtcatgcctgatcctattatcttaattgaactattatgccaatatatttgcctgttcctagtattattgtgcgctgatttgtctccctgatgcaaaacaaagctatgacgtgttggtgttccttagttttctttggtgttactataatctggtttactgaaatgttcttaaccgtgtcaggtttactctatggagaagagtgacaaggctaaaacagggaatgataaatttggttacaagcgaaacattattaatgaaacatattatataaatattggccgccttccagttatggttatgtcaaatttatgttggctccacaaactcaaggaaagtgattgccaatttgattctggtggatactttttgatcaagggaatggagaaggtaatactgtatattcatgtttctccttgccttatcattcagtgattatgtattgtgcctggtctccattctttcattatcatgtgttcaagcgtttatttttgtatgctaggatgaactgcaaggttgtggggggaaattatatagtagaaacctctgcctaaatggaaagttggaaactcctactcaaaaagtaaaaaaaaaagagagaggaaaaactcacatgtagatatggtaattgttatccatgcaaaatatcaacatcaaacccaacatagtttgtgagatatgaaactggcaaataatgaaggaaaagtacttgtcctgattttttttttctttttcttcgctattgtcaatttcatatctcatagatagtcaaaatttgatcttgagatttcgtatggttgcctaatatgacctttcctttatgtgagtttctctccctttttgaaatttttggataacctcgtggtttcctccaaagtttggaggaaaaccactactttataggaaaccaccaagtcatccaaagtagtggttttcactacagattttcctccaaattagttctgtagaatcatttcattttttttttgtttggcgttttagtatagtgtgtggacagctgaccatagccctaattattcgtagtgatctgttggagagtgattctcaatgtttaaaccctctgctggaaagaaagtttttgtaccatatatggcgtttttattttatatcactatgtttcatactatataaattttaaatgctgcaggtattcattgcgcaagagcaaaaatgtctgaccaggatttgggttgaggaccgtccttgctggatggtctctttcttgtctccaatcagaagaaggcgcatatatataaaactaattgattctgcaaataatgaagatgccagtggggggaagatcatttccatctcctttttgtatgcaaatatgccaatatggttgatgttttttgcactaggcatatcatcagataaggatatctttgatgttataaatatggaagactgtgatgcttgtgttatcaacacaattaccgcaactattaaagaatcagatgaattgtgtgaaggcttccgtaaatcagataaagcccggcagtatgttgacgaattgattaagaattcaaaatttcctcctgcagagccatttgatgattatattgctaaatacctcttccccagcataagtgggaaccggaacaaagcacttttcttaggttacatggtcaaatgccttttaatggctttcactgggaagcgcaaatgtgacaacaaggatgatttccggaacaagaggttggacctagctggtgaattgcttggaagagaactccgtgcgcatattaggcatgcagagagactcatggttaaggccttgcagagagatttaaatagtgagcgtgagttacaagaatttgatcattatctggatgcttcaattattaccaatggtctaaaccgtgccttctctactggttcttggtgccatccttacaaaagaaatgaaagatgcgcaggaattgttgcgacactaaggagaacaaatccgcttcagatgatctcggacttgaggaaaactcgccaacgagttgcttatgctgggaaagccggtgatgcaagatatccgtaagtatcttcttatgtttcatgcctatcttgtactatgatgtaaactgacttgaagaaaaaaatacttacagaaatccatcctactggggaaaattgtgttttatgtccactcctgatggtgaaaactgtggacttgtgaaaaatctagctgttacagctactgttagctccagagtagcaccgccattgattgacaggttcatttcttgtggaatgaataagctgcatgagattcctacagaggaggttcctagaatggataaaatcttcctgaatggggattgggtggggtcctgtagtgacccggcttcatttgtcttgcgtttaaggtgcatgagacgcagtggtctgatagatccacaggtttgctctcatttcccatggcaagaagttttctgttggaaccttttttgagcattatgtcaatgattggtgtgctagtcccatagtcttcatcatgcctagttaggaagagtccctaattttgtttcataacctttttggaaaggtcaaactcaaatctgaatgcttagtaagtcattgacctgtattatcttacttctattcagcttgaataatgttgctttgaacgttatatttaggtaatcctgatttggactctatttaagttatgtattctatctggatgcatacacactgggatattggttcctgcatattttttccccttctgtgtagtatgtgctaccccctccgttgaataaataaagtgtatattgtgtctccaacataacaacttgacaatagttttataacctgatgtaacaaaaggaaggaatatatggaaacatctatcaagacagataatgatatatttttatacagttttatgtgtttacttcctctgtcccaaaatatagcaacctaggactctgtctagatatgttgttctaggtggtgtcccatctagtcgttctatgttgctatattctgggacagagggagtaatatatattaatggcctctagatcccaagtaagttacattctggaacagagacataacgagggatactttacatgttgccactaatagtgtatctttttttaatgatccatttgattaggttgagataaaacgggacaagcaccaaagggaagttcgggtgttttctgatgcaggtcgaatcctcagaccgcttcttgtggttgaaaatctcaataaaattaggagaccgaagggcagttcatattcttttcagtggttaatgcaacaagaaataattgagtttattggcgttgaagaagaggaagatatacgaagtgcctggggcatcaggaacctatttgagagtgaagaagaggctcccatggtaaaaatgaataaagcagaggatgtcttcaatgttaagaggaagatcggaggggaggtttcaggttatacgcactgtgagctggatctttcttttctgctaggattaagttgtggtattatcccttttgcgaaccacaattttgctcggagggttctttaccaatctgaaaaacattcacagcaagctattggatactctacaacaaatccgcacatcagagttgataccctttcccatcaactttactatcctcagagaccccttttcaaaacagtgatagctgactgcattggtagatcagaatatacttttgggagaaaggatgactttgccagaccagagtatttcaatggccaaaatgcaatagtggcagtgaatgttcatcaggggtttaatcaagaagattccgtggttatgaatagggcttctcttgagcggggtatgtttaggactgagcacttcaggaactataaggctgaagtagagaacaaaggtgggccaggtggcaacaaacgactaaaaatgaaggataagattgacttcggtaaaatgcaaagcaagagaggacgtgttgacaatcttgacgatgatggattaccatatgtcggtgcaagtcttcagagtggtgacattgtcattggaaaggtctcagaatctggtgaagatcatagtattaagctgaagcatactgaaaagggtatggtgcagagggtattactttcagctaatgatgaggggaagaactttgcagttgttactctaagacaggtaatgatattgtttttattaaacatgtatcttctatccagcagtattcatgatcctgacattggttgccagttgccactatattcatattatagtactcaacaatagaatgctgtcccttttgaaaatgtgcaagcaaactttgggagtttccgagtgatgacataaaagagagatagtgtatatggtaaaaccattactagatctatcatgtacaacactttcattcaattatgccactaacatttagtaaattctaatagctaccagcattttcatagaaattggtttcagagtgcaattgtgcaatgtccaaactggcatatttgtggggagatcaagttatcgaatattggagtatcataatcattgccatacaggatgcttgcatgacttacttgatctggcagtccagatcctgcttatttccttattatttaatttcactgctaaacatgatttagtaattgcttgtcaactaggtgtcacctagtcgttgttacatgactacatgagtcacccaagactagtgacttggcaatcttattctatcatatgttttttctaatattttaggctgtaatatgatatttacattcactgagttctggtggccaaattaagttttgttaatatgatatttacattcactgagttcaggttcgatcaccttgccttggagataaattttccagcatgcatggccagaaaggtgtcgttggttttctagaatctcaggagaatttcccatttacttaccaaggaatagtaccagatattgtgataaatccacatgcatttcctacccgtcaaactccaggccagcttcttgaagctgctttggggaaaggaattgccctcggtggtacaatgagatatgctacaccattcacaacagcatcgtttgatgtgatcacagaccaattacacaagtaagtgtttcttctctaatggatgaattggtttctttcctaaattcactaaccaacctcttcacgcacattggtacaatagatgaaatgatttcggaggggcattatcgctcaaatctgtttgtttaactatgtggttacacacaaactgatattgtttgagctttcttgtaaatcttgttcgttattactgcaaagtgcacattgagcaaaaaaagacaaaaaacagtgcagttttacaagtgcgcaattcagcatcacttattcttgatatgttgatcaatcaggtcaatgtgtgcatgtcaccttaagtggcataaacaattgtttcagaaaatgtcttgtagtgaaacattactacaaactgatgtctcgttccatttcagggctggattttcaagatggggagctgaaagtgttctcaatggccggactggtgaaaggatgcactcattgattttcatgggtcctactttttaccagaggctgatacacatggcagaagataaggtcaagttcaggaacacggggccagtgcaccccctaacacggcaacctgttgctgacaggaagaggtttgggggagtgaagtttggagaaatggagcgtgactgcctcctcgcccatggtgcagcagccaacctccatgagcggctcttcatgcttagtgacttctcgcagatgcacgtctgccagacgtgcgaacgtgtggcgaatgttatcatgaggcctgtcccaggaggaaagaagatccgggggccatactgtgggttctgccgctcttctgaaaacatagtaaggatcaatgtgccctacggcgcaaagctgctctatcaagagctattcagcatggggatctgccttagatttgagacggaagtctgctagaactccacatctactatcgactcaccatgtatatatatcctcgttgtcccttggagattctgttatgggcattagtgttgtagccacatgacttctcttccggttggacgatggcatagctaggaggggtgaatctgaagtcaggtgaaacctttcttttgctatttatttgggtgaagactcaattcccatcacctgcctttgatgtcctgtgaccaaccgatggcatagttagggatggggtgaatcagaggtcaactgaaaacccttttgctatagttcgatgtttcaccttggcactgtactatgcatatttggatgaaaactcatttccc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0641000, RefSeq:Os04g0641000