Os04g0643500

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Revision as of 11:31, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0643500| Description = 2OG-Fe(II) oxygenase domain containing protein| Version = NM_001060586.1 GI:115460901 GeneID:4337180| Length = 3640 ...")
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Gene Name

Os04g0643500

Description

2OG-Fe(II) oxygenase domain containing protein

Version

NM_001060586.1 GI:115460901 GeneID:4337180

Length

3640 bp

Definition

Oryza sativa Japonica Group Os04g0643500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:33145724..33149363

Sequence Coding Region

33145724..33145987,33147093..33147414,33148969..33149363

Expression

GEO Profiles:Os04g0643500

Genome Context

<gbrowseImage1> name=NC_008397:33145724..33149363 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:33145724..33149363 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcagctaccaacaacgtcggcgcgggcgcgctccccgtcgtggacctggcgccgttcttggccaccggcgacgacgagggcggcgtcgcccgcgccagcgccagcgccaccggtgccgtgcgcgaggcgtgccgggactacgggttcttccgcgccgtcaaccacggcgtgccggccgagttgatggcgcgcgcgctcgagctgtcggccgcgttcttcgcgctgccggacgaggagaaggccaaggcccggccggtcgagggctccgaggcgcccctccctgccggctacgcgcggcagccggcgcactccgctgacaagaacgagtacctgctggcctttgaccctcagctcggcttcaatctgtaccccgatgagccatcaggattcagggaggcattatatgagttgtacggcaagctcacggagctgggcgtgctcatccaggagatcctgaacaagtgcatgggcctcccgccgggcttcctcaaggagtacaacggcgaccgcagcttcgacttcattgcggcgctgcgctactccccggcgacggcggaggagaacaacggcgtcagcgagcacgaggacggcaactgcatcaccttcgttctccaggacggcgttggcggcctcgaggtcctcaaggatggcgcctgggtccccgtcgaccccgtcgagggcagcatcatcgtcaacatcggcgacgtcatacaggtgctgaccaacggcaagatgaagagcgcgacgcaccgggtggtgaggaagccggcggtgcacaggcactcgctggtcttcttcttcaacgttcacggcgacagatgggttgagccgctgccggagtacacggagaagatcggggaggcgccgcggtacaggaggttcctgtacagcgagtaccagcagctgcggatgaggaacaagacccacccgccgtcaaggcccgaggacgtcgttcacatcacccactacgcgatctaa</cdnaseq>

Protein Sequence

<aaseq>MAATNNVGAGALPVVDLAPFLATGDDEGGVARASASATGAVREA CRDYGFFRAVNHGVPAELMARALELSAAFFALPDEEKAKARPVEGSEAPLPAGYARQP AHSADKNEYLLAFDPQLGFNLYPDEPSGFREALYELYGKLTELGVLIQEILNKCMGLP PGFLKEYNGDRSFDFIAALRYSPATAEENNGVSEHEDGNCITFVLQDGVGGLEVLKDG AWVPVDPVEGSIIVNIGDVIQVLTNGKMKSATHRVVRKPAVHRHSLVFFFNVHGDRWV EPLPEYTEKIGEAPRYRRFLYSEYQQLRMRNKTHPPSRPEDVVHITHYAI</aaseq>

Gene Sequence

<dnaseqindica>3377..3640#1950..2271#1..395#atggcagctaccaacaacgtcggcgcgggcgcgctccccgtcgtggacctggcgccgttcttggccaccggcgacgacgagggcggcgtcgcccgcgccagcgccagcgccaccggtgccgtgcgcgaggcgtgccgggactacgggttcttccgcgccgtcaaccacggcgtgccggccgagttgatggcgcgcgcgctcgagctgtcggccgcgttcttcgcgctgccggacgaggagaaggccaaggcccggccggtcgagggctccgaggcgcccctccctgccggctacgcgcggcagccggcgcactccgctgacaagaacgagtacctgctggcctttgaccctcagctcggcttcaatctgtaccccgatgagccatcaggattcaggtcacatcaagaactcaaaactgcaataactcgcctgaagttatgagaaactcttttaaagattagttgatcatccacccatttcttacataccaaataaatagttatattttttaaaaaagaaattaacaagatacagtttgtgcgttgatatattacatactaggtaaaatcccgcgcattgctgtggaaatttagtatgataacaaaaaaaaacatgtaagatagttagataacaccagattaagtaaattaatgtggtttatgataatttaaatttaaatagtatgtagaatggtgattcaaacgtaaaaagtaaggtggtatgactttatggaagaagaaaagtagggagatagtttggaccgtaaattaatcatctaaaggctaaaaacaattgatgtgatatgacttaattagaggaaaaaagagaaagataatttagaccataaaataatcatttaagcactaactaagtgaggatgaactacttcatccgtttcacaatgtaagtcattctaacatttttcacattcatattgatgttaatgaatctagatagatatatatgtctagattcattaacatcaatatgaatgtgggaaatgctaaaatggctaacattgtgaaacggagagagtatataagtatatatgatatcataaaacataataaagatatacattgaaacattatgtgaattatgttggatgataatttaacatgtttgtatttgaaaatctcttaaattataaaaactataaagatatagcatgtttgcatgatgtttaaatgtgatgatcgttagtggatgatgatgtggcattatattaattagtggatgatgatgtggcatcttgttaatggattatgatgtggcatctttttatgttaagcttaatgagttagtgggggataactttataataagataggattaacatatactagaaaaaatgccagcctattttaatcttattattattcactgtgagaattcgtttggatatatatatatatttgtctagaaaatcatgtcaagtttgcatgtgagtttttttttaaatagatttcttatcgttatatatttccaaaaacaaatgaacttcaaacctgattcaaatacggatctatatttctaaaagcgaacgaactaagaaaccgactcatgcacatacacagataacgtaccaaaagtgccggtaaaaatatctttaatttttataatagtagggatagggatatatattaaaatatttttttataactactccctccgtttcatgttataagactttctagcattgtccatattcatatagatgttaatgaatctaggcacacatatatgtctagattcattattaacatatatatgaatatgagcaatgctagaaagtcttataatatgaaacagaggtagtatttagttaatattaaaaaatggttggacgtatacccaaaagattagaatacatctccctgaaaattgttgctttctacctaaaagatccgtcgttttcgtcatcatttctaaaagaaactgttcatcagggaggcattatatgagttgtacggcaagctcacggagctgggcgtgctcatccaggagatcctgaacaagtgcatgggcctcccgccgggcttcctcaaggagtacaacggcgaccgcagcttcgacttcattgcggcgctgcgctactccccggcgacggcggaggagaacaacggcgtcagcgagcacgaggacggcaactgcatcaccttcgttctccaggacggcgttggcggcctcgaggtcctcaaggatggcgcctgggtccccgtcgaccccgtcgagggcagcatcatcgtcaacatcggcgacgtcatacaggtgactgcacaacactactatattcaaagttttatatagaatgagtagtaatttggatcacattttactgtcaaagttttattttaaaccttacttaaaccgattttttaaaattttaaacagtgtttgaaaccataggttcccaacacacactgtgcatacggaaagcggagcagtctattagcgcgtgattaattaagtattagctattttttttaaaaaaatagatcaatatgatttttttaagcaactttcgtatcaaaacttttttttaaaaaaaacacacaccgtttagcagtttgaaaagcatgcgcgtggaaaatgaggcggatgagctgggaaccggtagttccaaacacagcctaggtaattttattagttttacagtgtggatcatccaactctcttttttagctttgtataagcttatggtaaagatatggcatgcagagtttgtcatgtgtcgaaaccaatgtatttgggattattgatgtgcactaaaaaaacttacttgggatgatccaaactagaacaatagcaaaattacctagttctggatatatggatgtcttaaaataaaactttggcagcaaaggtggctcacattgctagtcactcttttatttatgcactgttagttcactgctggagaatcgctttttagtcccaaggttgggaaccccctatagttctggttttctaaccgggactacgaatccgggactaaaaatgtctatttttagtctcggttgaaataacgtgggaaactgatttgtagtcctggttggtataaacaagcgggactaaaaatctgatctttagtcccggttgtttataccaaccgggattaaaaatactaggagacctgccacgtcgtgctaatgaataaaccggtacaaaagatgatctttaatcccggttggtaacattaatcgggactaaagatcattgcacttttaaaccgggactaaaaatgatttttactctcggtgttttaagcaaccgggactattgttgtttttaggcaaccgattaaagatggtttctctagtagtggtttgagagtgatgttgccgttcatttgtctactgatatgattgttaaggtgctgaccaacggcaagatgaagagcgcgacgcaccgggtggtgaggaagccggcggtgcacaggcactcgctggtcttcttcttcaacgttcacggcgacagatgggttgagccgctgccggagtacacggagaagatcggggaggcgccgcggtacaggaggttcctgtacagcgagtaccagcagctgcggatgaggaacaagacccacccgccgtcaaggcccgaggacgtcgttcacatcacccactacgcgatctaa</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0643500, RefSeq:Os04g0643500