ORF1
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Contents
Annotated Information
Function
Chalk5, influences grain chalkiness, which also affects head rice yield and many other quality traits. Chalk5 encodes a vacuolar H+-translocating pyrophosphatase (V-PPase) with inorganic pyrophosphate (PPi) hydrolysis and H+-translocation activity.Elevated expression of Chalk5 increases the chalkiness of the endosperm, putatively by disturbing the pH homeostasis of the endomembrane trafficking system in developing seeds, which affects the biogenesis of protein bodies and is coupled with a great increase in small vesicle-like structures, thus forming air spaces among endosperm storage substances and resulting in chalky grain.
Expression
Two consensus nucleotide polymorphisms in the Chalk5 promoter in rice varieties might partly account for the differences in Chalk5 mRNA levels that contribute to natural variation in grain chalkiness.
Evolution
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Labs working on this gene
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References
Li Yibo,Fan Chuchuan,Xing Yongzhong etc.Chalk5 encodes a vacuolar H+-translocating pyrophosphatase influencing grain chalkiness in rice,Nature Publishing Group, a division of Macmillan Publishers Limited. All Rights Reserved. 2014/04/46(4):1061-4036
Structured Information
| Gene Name |
chalk5 |
|---|---|
| Description |
Putative uncharacterized protein |
| Definition |
Oryza sativa Indica Group BGIOSGA000079, complete gene. |
| LocusTag |
chalk5 |
| Ensembl Transcript ID |
BGIOSGA000079-TA |
| Ensembl Protein ID |
BGIOSGA000079-PA |
| Length |
2622 |
| Source |
Oryza sativa Indica Group ORGANISM Oryza sativa Indica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:46289509..46292130 |
| Sequence Coding Region |
46291834..46292130,46291618..46291722,46291453..46291526,46291309..46291367,46290712..46290749 |
| Genome Context |
</Ng.2923-F1.jpg> name=IndicaChromosome01:46289509..46292130 source=RiceIndica01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=IndicaChromosome01:46289509..46292130 source=RiceIndica01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>ATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTGCGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGA</cdnaseq> |
| Protein Sequence |
<aaseq>MAAHSHVIPFLSPAATSARCSPYGHRRRGRAGLLRCAAAAGQAGFFTRLGRLIQEKAKSDVEKLFSGFSKTRESLSVVDELLTYWNLADTDRVLDELEEALLVSDFGPKISFRIVDTLREEIRDGKLKSGAEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAKPASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAEAFVEAIFP</aaseq> |
| Gene Sequence |
<dnaseqindica>1..297#409..513#605..678#764..822#1382..1419#1578..1698#1793..1861#1956..2038#2202..2270#2360..2422#2509..2622#GATATTACTTTTCACTCCAACAGATCATCCATATTACATCCTCCATATACCAACATCCTA TATTTTACTAATATTTTACAATTACCACATATTTATCACCACTCTAAAAAAAAAAACTCC CCCCTTTATCTCTTCGTCTCCGCCGATCTCCCCACCTCTCTCTCTTCGGACTTCTCTACC GCCGGCGCCGAGAGGACGGGGAGGACGAGGGCCGACCGGAGGGGCGGCGCGGTCGGAGGA GCGGCTAGGCGGAGGGGTGGAGGAGCGGCGCAAGGGGCGGCCGGCGGGAGGCGACTGCCG GGTCCATCTCCCTCCTCCTCCCGCCGAGTCCATCTCCCTCCTCCCGGCGTGTCCATCTCC CCACTGCCAGATCCGCGGAGGAGGGGCGGCGCAGGCGGCGGAGGAGCGGCGGGGCAGAGG GGCGGCGGGGTCAGAGGAGCGGCGGCGCGGGTGGAGACCCCGAGCGGCGGGGACGGCGGC GACCTCACTGCTAGATCCGCTGCCTCTCCGCCTCTACTCCGGCGATCTCCACCTCTAAAT CTGTTGGCCTGCAGGTGGTGGTCGGGTCGATGGCGGCGCAAGAAGCAGGTGATGCCCCGG CGAGCATCACGGGGCCATGCTCGCGTACAGGAGACAAGAAGGCGTGCGTGGAGTTGTTGT CGGGCATCCCGGAGGCCCGGAAGGCGACGACGGTGGGCCCCCTCGCGGAGCTGTACCTGC AGGCAATCGCCAACCACACGACGGAGGCCAAGGCGATGGCTACCAAGCTGCTAGCCACCA TGAAGGGGAAGGGCGTGCCACCCGTGTGCCTCCAGCAGTGCACCGCCAGCGTCGACACCC TCTCCAACGCCCTCGCCGCCTTCTTCTCTGCCTCCGCCGACGTCAACAAAAAGTACAGGG ACTTGGACGGTTTTCTCGTGGGCTTTCTTAAACAACCGCCCATCTGCATGAGCGCGTGCC CCATCCGGTCGTGCGATATGGAAGAGGTCACTATCGCCGACAAGTTCCACCAAGCCTGGA AGATGTTGGGTGTCGCACACGACCTCATCACGCAGATCCTAGGCACAAAGTCCTAGATAC ATTAAGGGGCGGATCCATAACAAGATTTAAGGGGAGGACTCGTGATCTCTTTCTTCCTTG TTCAGTCCTCTCTACTTTTCATTTTCTCTCTATTTTTCCCCCTTTCATTTCCCCTTCTAC CAATGGTGGTCCAGCGGGATAGGGGGGACTCGAGTCCCCCTAGCACCCACGTTGGATCCG CCCCTGGATACGTTTTATATGTTGGACATTTTGATTTGCCATCCTACTACCAGAATTTAC CTATCAAATAAATCTTTCTAGGTTAGCAACCCAAATACTTCCTTACAACTGTTTTTTTTA TTTATTTTGACGGGTGCGCATGTGTCTGTTCCCACCTCCAATCGAGGAATAGGAATTTTT ATCATACCAGTGTGGGTATTATTGTTATATACTCCTATGTTGTTGAAATAACTGAGATCG TTATTTTTAAGATGTGCACATTGTAACTATTTCTATGGGGAGAATGATTTCTAT</dnaseqindica> |
| External Link(s) |
