Os04g0647300

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Revision as of 11:31, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0647300| Description = Similar to Ubiquitin-specific protease 22| Version = NM_001060605.2 GI:297603461 GeneID:4337205| Length = 3969 bp| ...")
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Gene Name

Os04g0647300

Description

Similar to Ubiquitin-specific protease 22

Version

NM_001060605.2 GI:297603461 GeneID:4337205

Length

3969 bp

Definition

Oryza sativa Japonica Group Os04g0647300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:33331775..33335743

Sequence Coding Region

33332228..33332991,33333721..33333845,33334855..33335741

Expression

GEO Profiles:Os04g0647300

Genome Context

<gbrowseImage1> name=NC_008397:33331775..33335743 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:33331775..33335743 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>tccacccccccatccccgcaccgctcgcactcccactcccgcgcccaccgcctcatcccccacattcaccgccccgatgaccaccccgtccgcgccgccgccgtgcccgcacctcgccgcgtaccgccacaccacgcgctccactccgcttcactccagccagctgcactccgcgtcacagcccgctcggcacgccccgagatccgccgcgagcactcgcgagctcccccgctgctccccctgctcctcccccacctcctcctcgtcccgcactctacgcctgcactctcactgcgccgccgtcttctgccccaccaacgccgcctccaacgcctccgcctcaacatccggcggccaccagatcgccgtcgacgtcgaccgcgccgagctcttctgcggggcgtgcggggatcaggtctacgatccgatcttcgaccacgccgtcgtcctcgccaagtcctcctccctcctcccccatcggcatccgcttccccctccccttcccccgccgcgccccgcaagcgccgccgcgtcgagtaccgcgcctgggcaccagatccggccgaattcgcgctcatcagctccgccgatcccaccacctccgcatccgccgccgcgcccgcggggctccgcgggctcaacaacctaggcaacacgtgcttcatgaactccgtgctccaggctctgctacacgcgccgccgctccggaactacttcctcggcgatcggcacaaccgctacctctgcccgcgccagacgcccatgaggcgccgttccgccgaggcaaacgacaaggcggcgtgcctggcgtgcgatctcgacgagatctactccgccgccttttccggggagcgcacgccctacagccccgccaaattcctctatagctggtggcagcatgcatcaaatcttgcgagctacgagcaacaggatgcacatgaattttttatctccatccttgaccatatccatgaaaatataaaggatgatcaacacaaatcacttgcccaaggccatggagattgttgcattgcacacagggtattttctggcatcttgagatcagatgtcacctgcacacattgtgggttcacatcaacaacttttgaaccctgtatggacatctctctagacttggatgctggatataacaattctcttggtgttgcaaacccaaaggtacatgtgcggaatggagagcgaagctcaggtggcactaataccaaggtatcaacactcatgagatgtttggagcggtttacaagggctgagcggttggatgctgaacagaagttcttctgtgaacgttgcaaggagaggcaagagtccctgaagcaaatgtccattcggaggcttccattggtttcatgctttcatattaagaggtttgagcattcatcagttaagaaaatgtcaaggaaggttgatcactgtttacagtttcctttttctcttgacatggcgccatatctatcgtcctctatactcagaagcagatttgggaaccgtatatttccatcagaagctagtgatgcagattcagtttctgaattttcatcagaatttgaaatatttgcggtgatcatgcatagtggtaagctagaagctggccattatgtgacatatctcaggttaaacaatcactggtacaaatgtgatgatgcctgggtaaccagagttgaagagcatactgtcagaacctctcaggcatacatgctcttctatgtgcagaagacactttactacaaagcttgtgaaagagcaactgctgtctga</cdnaseq>

Protein Sequence

<aaseq>STPPSPHRSHSHSRAHRLIPHIHRPDDHPVRAAAVPAPRRVPPH HALHSASLQPAALRVTARSARPEIRREHSRAPPLLPLLLPHLLLVPHSTPALSLRRRL LPHQRRLQRLRLNIRRPPDRRRRRPRRALLRGVRGSGLRSDLRPRRRPRQVLLPPPPS ASASPSPSPAAPRKRRRVEYRAWAPDPAEFALISSADPTTSASAAAPAGLRGLNNLGN TCFMNSVLQALLHAPPLRNYFLGDRHNRYLCPRQTPMRRRSAEANDKAACLACDLDEI YSAAFSGERTPYSPAKFLYSWWQHASNLASYEQQDAHEFFISILDHIHENIKDDQHKS LAQGHGDCCIAHRVFSGILRSDVTCTHCGFTSTTFEPCMDISLDLDAGYNNSLGVANP KVHVRNGERSSGGTNTKVSTLMRCLERFTRAERLDAEQKFFCERCKERQESLKQMSIR RLPLVSCFHIKRFEHSSVKKMSRKVDHCLQFPFSLDMAPYLSSSILRSRFGNRIFPSE ASDADSVSEFSSEFEIFAVIMHSGKLEAGHYVTYLRLNNHWYKCDDAWVTRVEEHTVR TSQAYMLFYVQKTLYYKACERATAV</aaseq>

Gene Sequence

<dnaseqindica>2753..3516#1899..2023#3..889#actccacccccccatccccgcaccgctcgcactcccactcccgcgcccaccgcctcatcccccacattcaccgccccgatgaccaccccgtccgcgccgccgccgtgcccgcacctcgccgcgtaccgccacaccacgcgctccactccgcttcactccagccagctgcactccgcgtcacagcccgctcggcacgccccgagatccgccgcgagcactcgcgagctcccccgctgctccccctgctcctcccccacctcctcctcgtcccgcactctacgcctgcactctcactgcgccgccgtcttctgccccaccaacgccgcctccaacgcctccgcctcaacatccggcggccaccagatcgccgtcgacgtcgaccgcgccgagctcttctgcggggcgtgcggggatcaggtctacgatccgatcttcgaccacgccgtcgtcctcgccaagtcctcctccctcctcccccatcggcatccgcttccccctccccttcccccgccgcgccccgcaagcgccgccgcgtcgagtaccgcgcctgggcaccagatccggccgaattcgcgctcatcagctccgccgatcccaccacctccgcatccgccgccgcgcccgcggggctccgcgggctcaacaacctaggcaacacgtgcttcatgaactccgtgctccaggctctgctacacgcgccgccgctccggaactacttcctcggcgatcggcacaaccgctacctctgcccgcgccagacgcccatgaggcgccgttccgccgaggcaaacgacaaggcggcgtgcctggcgtgcgatctcgacgagatctactccgccgccttttccggggagcgcacgccctacagccccgccaaattcctctataggtctggatctagcgctctgtttgcattgggttgatgtcgttgggtgttttttgagcaacgtgctgcttttttaatgttgggttcgttgcgtacttggaaagttattaagatgaatccgttatatgaaatgggtgcgtcatgtattgtaactagtttgggatcgaattgtatcagtctcttgcaaatgatagtgttgtttgtacgctatgccttgaaactgtttgacgtagatcatgattatgtaggttgcaatttggaactacttatcagttagcatgaaatgggatgatgtgagcaagatatgctactaaaagggcgagatctgttccatatgtttcgctagaaagggtaacggtttcacgtttggatgcacatgacctgattgataaaatgtcatatggtcttaagtacatttcgcatgcttagaatttgttgagctatgttcatgtatcaagtacaagtactccaaaatgcatgaccagtttttaattcttcagagcaccttcttatcaggtgcatttgaagctatttgctctatcattggatatgggccaagtcatatgagtgaattgcataatttaagttaaaattttctgcaatgacatcatatcttgctgctgcgaaggatagtgtacaagtatgtggcaggtacataagttattgctagcactgctgatactttaccaggatatgtttttacaattcgttcatcgtaatattcttgtttatgccctatgggtattcagcaaactgttgtgatcatagtgtgacattatgtgacacaaagggtaattatcaagccaaagtaatggtgttctaaaaaaagccgaagtaatatttttaaactttagtttatatctatgtgaaatttaaatatgtgaagtctttttttgcggctgatctggtttgacgaacttggacttgcacagtaacatggcatactactttattctggttcatgaattaaagtgattgtttttcttctgattattgtcgttatgtttgttagctggtggcagcatgcatcaaatcttgcgagctacgagcaacaggatgcacatgaattttttatctccatccttgaccatatccatgaaaatataaaggatgatcaacacaaatcacttgcccaaggtagttagcttctctcctgctactatttaaattaaagcttttccatctattcaactgaactgatatgtgaaaagaaaagaagaatatccacccttttattgtgaaaacagtgcacccttgagccaagaatgaatcaataccagttttatttttatttttatttttggttgaagcaaaaagcatatctaaatccatctgttgctggtagtgtggtgcatagtgaacatttgtggctgcttttgtactatttttattatttgtcactcctactcttctttggaggatgactctatccacccttttattgtgaaaacagtgcacccttgagccaagaatgaatcaataccagttttatttttatttttatttttatttttggttgaagcaaaaagcatatctaaatccatctgttgctggtagtgtggtgcatagtgaacatttgtggctgcttttgtactatttttattatttgtcactcctactcttctttggaggatgactctacagtaggttctacaccctaaaaacgaaaacaggataagtcgtggaaaatggtagtcctgtactatttggatattggggaacaaattggacaaatgtgttttttctcttttttgttgtagtggagaacatattctatcttgcttttgataggctgaactatgatttatattgaggcagatgagctgttatagatctaaccattatgtgtatttttttccctaataggccatggagattgttgcattgcacacagggtattttctggcatcttgagatcagatgtcacctgcacacattgtgggttcacatcaacaacttttgaaccctgtatggacatctctctagacttggatgctggatataacaattctcttggtgttgcaaacccaaaggtacatgtgcggaatggagagcgaagctcaggtggcactaataccaaggtatcaacactcatgagatgtttggagcggtttacaagggctgagcggttggatgctgaacagaagttcttctgtgaacgttgcaaggagaggcaagagtccctgaagcaaatgtccattcggaggcttccattggtttcatgctttcatattaagaggtttgagcattcatcagttaagaaaatgtcaaggaaggttgatcactgtttacagtttcctttttctcttgacatggcgccatatctatcgtcctctatactcagaagcagatttgggaaccgtatatttccatcagaagctagtgatgcagattcagtttctgaattttcatcagaatttgaaatatttgcggtgatcatgcatagtggtaagctagaagctggccattatgtgacatatctcaggttaaacaatcactggtacaaatgtgatgatgcctgggtaaccagagttgaagagcatactgtcagaacctctcaggcatacatgctcttctatgtgcagaagacactttactacaaagcttgtgaaagagcaactgctgtctgatttggaacaaatatggctgacattattctgatcagccacaaaatatagtcatcagagagcgcaccatgtaattccatccagagaaaaagtgcctgtcatttggacagccacgaagtcggatgagattcaacttttttgcatgcaataacctttggattcggttgaccgagggtttttggcaattttctcaatagccaccacccaaaggaagaaggtcaattttatttgctcaatttatcttattacctgatttatgtgatcaattaagctggaagcattacactgttttacacaattggttgcgagggtgttctaaccccgataatgctggtgtttaagattatattgagcaaggaaataagtggaatgtgtagaagtgagagaaaagggaaccgaattttttgatgtgttcctttcagtagttgaatgccatctctactagctgatagcctg</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0647300, RefSeq:Os04g0647300