Os04g0648700

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Revision as of 11:31, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0648700| Description = Conserved hypothetical protein| Version = NM_001060612.1 GI:115460953 GeneID:4337213| Length = 6586 bp| Definition ...")
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Gene Name

Os04g0648700

Description

Conserved hypothetical protein

Version

NM_001060612.1 GI:115460953 GeneID:4337213

Length

6586 bp

Definition

Oryza sativa Japonica Group Os04g0648700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:33404856..33411441

Sequence Coding Region

33404966..33405491,33406248..33406475,33406621..33406718,33407043..33407087,33407171..33407236
,33407315..33407468,33407554..33407663,33408620..33408795,33409375..33409441
,33409513..33409628,33409782..33409874,33410667..33410781,33410867..33411025

Expression

GEO Profiles:Os04g0648700

Genome Context

<gbrowseImage1> name=NC_008397:33404856..33411441 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:33404856..33411441 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtcccacgccgccgtcgtcgagatcatcgacgacgacgacgacgacgacgacgacgtcgccgccgcctccacccctcccgccctccacaagcgctcccatgcggtcgccgccgccgcccccgattcccccgacgccttctccccttcccctccagacccgaagcggcggcagctcgcggcgtcaaccatcgtgctcgacgacacccccacccctccgaagcggcggccgccgccggtagctgccgaccggtccgcctccgtggtggcagatacgccccggtcgttcgtgccgtgctcgctccgcaaccgcgccattgctggtgatacgcccgattctgttctcccgagcccgtcgttccacctcgacgctcccgattccgcgacccctggctcggatgtcccgtgctccgtcgggcttgacgacattgttcctgagaccccgggcttcaactccccacgcttggctcgtcccccggccgtgcctggcttgacgtctcctatgaccgcgaggaaattttctggagtatcttgtccaatatctctggatagtgatgacgaattggatgacactgtatacagggagtctttaaccaggacgccaagcaatatggcgaagccagaacacgcaattcagccttgtactacttcctgtactgataaagttgagaatacaaaaagtacagataagaaggattattcaaaatcaaatgttggatatcaaacaaacaattctgcatgcaaaaataatggaacaaccagctacaatcaaccccctcgtgctaattctccttgtgaagattctaccttgaaggaggctgatccttttatcaataaccattgtccgcaggaagaaaatgccctaccgattgaagaaaggaagaagaaacaacaggaagagaagagactaaagaaggaaaagaaagccagagaaatcgaagaaaaaaaacaaaaacgactggaaaccaaaaagcaaaaggaagctatgaaagctgaactagcagaattgaagaagctggagaaagaaaaaaagaagtgggaatcagggaagttagctacaaaatgtattgttgctgagattgactcaagtgttattgaaagtggctcagttggaggtcatcttgtgcaaggatttcatgagaagggcctttgttttcgagtaacatctaattcaatcaaggggtcaattttatggaagatgcaaattcctaatgagtttacccaggaccaagcttcaacatcacaagtgccatatattctctttgtgcttcaagctgaggaattctgcgatcttgtaagtggtggtacattactggatcatgttcagaaagttcgaagacagtatccagaattcacaatttgctacgttactaataaactgatgagcttcataaaaagacgtgagcagaatcagtacaacaagaccacatcaaattctaatagttggaagcgtccaccagtggaagaggccttatgcaaattagcgacacactatgctagagtgcgctcaaggcactgcacagatgaagctgaagtgacagagcatattgttggcttgacatatagtcttgcgaattgcaagttcaggaaaccattgacatggttatctgtgcatgctaatggttcaaatatttctaaaggttgcgttgataaagatcggattaagaaaagtgcctggctgaagtctttagttgctattcccggagtcagtccaggacaagctattgcaattgagaagaagtacccgtccatgagatcactactgaatgtgtatatggatgacagtaaatctgttcatgaaaaagaacatttgcttgaagacttgaggttggaaggtcctctgggtgattttaagagaaggctcggaccagcatgctctaaaaaagtgtacacaattctcatggcacaaaatggagcggcagaagtggaagttgataggcgtggagcttag</cdnaseq>

Protein Sequence

<aaseq>MASHAAVVEIIDDDDDDDDDVAAASTPPALHKRSHAVAAAAPDS PDAFSPSPPDPKRRQLAASTIVLDDTPTPPKRRPPPVAADRSASVVADTPRSFVPCSL RNRAIAGDTPDSVLPSPSFHLDAPDSATPGSDVPCSVGLDDIVPETPGFNSPRLARPP AVPGLTSPMTARKFSGVSCPISLDSDDELDDTVYRESLTRTPSNMAKPEHAIQPCTTS CTDKVENTKSTDKKDYSKSNVGYQTNNSACKNNGTTSYNQPPRANSPCEDSTLKEADP FINNHCPQEENALPIEERKKKQQEEKRLKKEKKAREIEEKKQKRLETKKQKEAMKAEL AELKKLEKEKKKWESGKLATKCIVAEIDSSVIESGSVGGHLVQGFHEKGLCFRVTSNS IKGSILWKMQIPNEFTQDQASTSQVPYILFVLQAEEFCDLVSGGTLLDHVQKVRRQYP EFTICYVTNKLMSFIKRREQNQYNKTTSNSNSWKRPPVEEALCKLATHYARVRSRHCT DEAEVTEHIVGLTYSLANCKFRKPLTWLSVHANGSNISKGCVDKDRIKKSAWLKSLVA IPGVSPGQAIAIEKKYPSMRSLLNVYMDDSKSVHEKEHLLEDLRLEGPLGDFKRRLGP ACSKKVYTILMAQNGAAEVEVDRRGA</aaseq>

Gene Sequence

<dnaseqindica>111..636#1393..1620#1766..1863#2188..2232#2316..2381#2460..2613#2699..2808#3765..3940#4520..4586#4658..4773#4927..5019#5812..5926#6012..6170#agccgagccgaccaccattngtcggaaccctaacccgtcaaaacccaaaatcaaaatcgccatctcggcgaagaaatccccaaatccaccggcgaagccccaccaaaccgatggcgtcccacgccgccgtcgtcgagatcatcgacgacgacgacgacgacgacgacgacgtcgccgccgcctccacccctcccgccctccacaagcgctcccatgcggtcgccgccgccgcccccgattcccccgacgccttctccccttcccctccagacccgaagcggcggcagctcgcggcgtcaaccatcgtgctcgacgacacccccacccctccgaagcggcggccgccgccggtagctgccgaccggtccgcctccgtggtggcagatacgccccggtcgttcgtgccgtgctcgctccgcaaccgcgccattgctggtgatacgcccgattctgttctcccgagcccgtcgttccacctcgacgctcccgattccgcgacccctggctcggatgtcccgtgctccgtcgggcttgacgacattgttcctgagaccccgggcttcaactccccacgcttggctcgtcccccggccgtgcctggcttgacgtctcctatgaccgcgaggaaattttctggtgaagtttcttaactattagatgcattcctttcgagttttcatgaattctaccggcctaggttaagctcatttggcttcatccattgaatttgccgtgtggcaaaatagacaaggattaggtccagttctagtcatggagcgttggagcttgtagctcatttctgtgttctttttcttggcctttatcatttatcaatatagctattcttggtgatttatggcaggggtttctatacagttttgagaaaacttgtttgcaacattctgaatcgatttgttgggtcattttggttttaacatcaggtggaatcagacctaaatcctaatgattgcaaacatttcgatgattaatctgtccttaatagtagtttggaattaccaataaacaaagtgtatctgactattctttcgagcatcatttgtttctttactctacttgatatatgaagggtccttaaaccttaagttacatgttggacccaaatgacacctgtcaaagtttagaaagtgcacagatttttatcaagaggaggaggcagagattttttttcttaaaaaaaaactccactaactattgctttgttgacgacacagcatgtccacttgtaactttttttttgggttaagatttatctccaccctgctttcttatgtgggaggcaactgagcgatcacattgattagtagatgacagcatgtttaatatttattatggttcttatgtggagtaactctctttctttctattttacaggagtatcttgtccaatatctctggatagtgatgacgaattggatgacactgtatacagggagtctttaaccaggacgccaagcaatatggcgaagccagaacacgcaattcagccttgtactacttcctgtactgataaagttgagaatacaaaaagtacagataagaaggattattcaaaatcaaatgttggatatcaaacaaacaattctgcatgcaaaaataatggtaagaaaaacctaaagtgaggacagtaaaaataaaatatttgacactcatatgtgttgtaaaatccttttagtatatatctggttgtaaacaatgtagataacacattattgtttagtgtattgactatgtatgcttttgttaggaacaaccagctacaatcaaccccctcgtgctaattctccttgtgaagattctaccttgaaggaggctgatccttttatcaataaccattgtccgcaggtatgttaacctaagtggtttgtaatttgatctgttataaacgttgaagcatatttttatattttctaggcagaaatgtcatggaaatgatatttgactgaatcagaagaatgtatgacctagtatgccgttaggcatgttaaattacgattacgctgttggagatcatattgtagttttaggtgtaattaattgttatgtgagtggaaatagctgagacttaagattatacaacaaagatattgatcaatccaaaagacaaaagttacaccttaatagctgtatatgtatactaacaaaaaaggagatgtcttgtttttgaaggaagaaaatgccctaccgattgaagaaaggaagaagaaacaacaggtgtggcataaagaaaatcttcttgtttcaagtttcacaaattataggtttagctttgaaattcttgttcttgcatgatataggaagagaagagactaaagaaggaaaagaaagccagagaaatcgaagaaaaaaaacaaaaacgactggtttgaaatctaacagaagtgtatttatttattcatgccatgatctagagattaacagagcatattgtttatttctaggaaaccaaaaagcaaaaggaagctatgaaagctgaactagcagaattgaagaagctggagaaagaaaaaaagaagtgggaatcagggaagttagctacaaaatgtattgttgctgagattgactcaagtgttattgaaagtggctcagttggaggtgtgttaaacaaaagtaagttaattaatactagtaatgtttgttcattgtctcacctttctccactgctcggatttccaaacaggtcatcttgtgcaaggatttcatgagaagggcctttgttttcgagtaacatctaattcaatcaaggggtcaattttatggaagatgcaaattcctaatgagtttacccaggtaccgcttacaggataacttgtttcctttgtttacctttttccattagaaattgcatccctttattggttcttcaaatgttttgttggcctcaaccttattctggcatgcgtacgttggtaaaacttgcgcctccaaagtaaaagaaaaaaaaatgatatatttctacttaaacggttggtttcatccttataaccaacgcacaaatgcgttccgggtgtttttaaagagagctgcctgtgtaattgaacagccaatgctgcttcctcaggcccaactcctaaagaagatacttttattcacatgatagttaatcaatcatgttcaatcagtggtttcgttgtacctagttagatgtggagtgttttcccaagccaatggctgctaacacattcagtcaaacttgatactttgtccattttgctaaattggctgagtatgtgcaaagaatattaccattataccatacagaggcgatctgccactctcagaatgaacaattacacatcatagtaaatttataattctgttagcttatgggaaaattgaaagggttaaatttcagaagtatcaacaccaaaatcgttttactgtagatgagcatgaatggttgcaaaacatgaatggttgcaaaatgcattcacagtgatgtggtatcaaccataaattctagacagaaagttagagttgatcaaagaatgggtagtcaggtagaaggttctcttatagaattcatcaccctttgctgctttcatgttttgctttgaagaaattaaaccatttttatggggtgccagccgataaatctagataaaaaaaatctcctatttgatgtatatatacagttccacaaaaagtcacggaagactgcgcatttgactggtatcttcttgttttctctgtgtaaatactggcgacacaggaaaaatatcctaaagtgccatacatttgtgcaggaccaagcttcaacatcacaagtgccatatattctctttgtgcttcaagctgaggaattctgcgatcttgtaagtggtggtacattactggatcatgttcagaaagttcgaagacagtatccagaattcacaatttgctacgttactaataaactgatgagcttcataaaaagacggttagttcctggaagtatggattatcttatatttactgttcttttggtctgaactctgctttaaattctgattttgtgttcaaatcatgttggtttttcttagtgcatgtaagttcagtggcagtcaacattagttttgtgtgctaatgtttcttaattgtcattagtctatttttgcttgaactatacgatcacatagttttggactgctggtactttatggctaatgaaaagcagcatttctgagaaaaagcattgtactcgctccgtttcacattataagacgtcttggcatctcaatccatcatctagattcactaatgtatatatgaacttggacacatatgaagcacatacatggatccatgcatgaatctattcaaaatccaaaatgtcttataatgtgaaacagaggaagtaatatgtaatatgttgcactgttcacaccatgacaaacacatacgcacaagactggagaaatatgcatgactctcaaggtttggaaggaaaacatagttatgtgaggtattgtttgtgtttgcctatcgtcctgctaaaatcaccttcttttcatgccagtgagcagaatcagtacaacaagaccacatcaaattctaatagttggaagcgtccaccagtggaagaggtctgtttgcaacgctatcaatttctgttctgaactactactgtatcctgaaatgtctcatattcttttaggccttatgcaaattagcgacacactatgctagagtgcgctcaaggcactgcacagatgaagctgaagtgacagagcatattgttggcttgacatatagtcttgcgaattgcaagttcaggcaagttacgtttgacaatataaatacttaacacattcttctggccaatattgtgcctttcacgcacatttggtgcagaaatatttttgttgtttcactcaatgaacaaccaagtccatgttttgatactgtcccctgctgactgttctgcaggaaaccattgacatggttatctgtgcatgctaatggttcaaatatttctaaaggttgcgttgataaagatcggattaagaaaagtgcctggtaagttgtgcttagaactgtatactgaaccaaatttccatttgttgctgtatgctttgcctttttgtgtccactaattgaaataatgttcctttctctatatacagtacattagatgattagaagaagcacatttcacagttttcatcttgtgtacaaggtttacttgcagtttgcaaagtatggtgttgattcaagttctgaaccagcatttctgaatatttctatttggttgttgctaaactgatgatcctctatgaaatctagcctagcctgtctaggtacctcagatacatttagtatttgatctaattctttcctttggtactttggtacaatcaaatcgaattgttcaaatcagaactgacagtgtttgtaatccaaccttgtctataaatattttgtggcacttcttttctttgtagatgacatcatctattcagccaacatcggatatcagccaagcttggttgatgttggtttgcaagctatatttacattaacggtttagcatggtggttaagtgatgcttctgtggacccgtggatggagaccatgcatggacttttggattttcggattgtgtggcctttaattttttctgattttatagtagagatgttctgactatgtgctacctattttaattgtgacaacttgataattttggtcccccatacttttgacagttctagctcccaactatgcattcgaatatagtgttcttggtttcttgacagttaatgatttgtagagtgtcactatgctaattcttcaaatcatctgtaacaggctgaagtctttagttgctattcccggagtcagtccaggacaagctattgcaattgagaagaagtacccgtccatgagatcactactgaatgtgtatatggatgacagtaaatctgtgagtgctgcccttttgacaggttctaaataagactaaaagctaggcattggcttttcggttttcttgacaggttctttgacaggttcatgaaaaagaacatttgcttgaagacttgaggttggaaggtcctctgggtgattttaagagaaggctcggaccagcatgctctaaaaaagtgtacacaattctcatggcacaaaatggagcggcagaagtggaagttgataggcgtggagcttagcttagccttccatgctcacatcgtcctaaatcatgaaaggtcgattttgtatttatggcccttttgtccatattgtttagatgaagcttcaaggtagttaatgtgatgttcttggtgctgaagccattacttgttatggctggcactttaatgtgctctctacccatcgataaaaatgaaattatcgtaaactgaagacatgacacaacttctgctagatatctggatgataggctgtgataccctattctgtgtgatagcaacacgataggtcccagcaattttgcaacttttgtaaagttcgtgactattgagaaaggttcaagtaaataggttggtactggaacctaaaaaacatattgaacggcactgcatttgtgcgtgtcggcagtgtaatgtatggtaccttaaggcgc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0648700, RefSeq:Os04g0648700