Os04g0648800

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Revision as of 11:31, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0648800| Description = Zinc finger, RING-type domain containing protein| Version = NM_001187192.1 GI:297723514 GeneID:9272591| Length = 548...")
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Gene Name

Os04g0648800

Description

Zinc finger, RING-type domain containing protein

Version

NM_001187192.1 GI:297723514 GeneID:9272591

Length

5483 bp

Definition

Oryza sativa Japonica Group Os04g0648800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:33421409..33426891

Sequence Coding Region

33423625..33423942,33424008..33424400,33424488..33424628,33425231..33425281,33425731..33425808
,33425882..33426025,33426508..33426639

Expression

GEO Profiles:Os04g0648800

Genome Context

<gbrowseImage1> name=NC_008397:33421409..33426891 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:33421409..33426891 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcagtgctcggcaggtgctagcactagtttttcccacaggaacgatagtattttccataacattgcttcttcgagtcataatccctctcctagtacaaatttaccctctcctaattgtctgttggttccaagcactcttgatgaacaactcccgcgttatggagctactacagctggattgtcatctagtagctatgatcctagtggaggcaataacaattcaggaggctcacaaagaagttttcggccaagaactagcctggctcaacatattggcccctatggtgtgtggccatcttcaagtactatcagacattccagtggtcagtagcctgaactttcaataccagcatccaatgaatgtcgttcctggcattccacagatgtcacaccggttcactggtccaggggcctcatcatcaagaacaggcaatttggagaacagaattattggtagtgaggaatttagcgcgaggaatgtagtggctaccagcttccctgatgcagttcctccggccgcactagacatgaggcatttgataccagaaccatctagttggaatgtagatggcagagctactaccattccaggaaatgttccttcttcatcgagagctaataccaattcgatggttaatccaccagcaggctctccatttattgcccatcaaaacttgcatagacgtaatcctcgtaatttgtcagaggagataagtcgtttatctggagctcttcgtggccatcagcacccacgcctaaggtccggttttctgttagaacgacaaggtgatggtgtttggggtgttccgttgtcaactaggagcagggaaggaagaagattaattgagatccggaacgcgcttgaaatgattcacagaggggaaaatgtaagatttgagtccattttctatggtggagtcgacattcatgacagacacagggatatgcgccttgacatagacaacatgtcttatgaggagctattggcactggaagaaagaataggcaatgttagcactggcctcagtgaggaagaagtgacaaagctcctaaagcaaaggaaattctcatcatggaggttggaagcatctgtggaagaagagccatgctgtatctgccaggaagagtatgttgatggggatgatctcgggacactggactgtggacatgacttccatgttggatgcgtcaggcaatggctggttgtgaagaacacctgtcccatatgcaaaaatactgctctgaagtcttag</cdnaseq>

Protein Sequence

<aaseq>MGSARQVLALVFPTGTIVFSITLLLRVIIPLLVQIYPLLIVCWF QALLMNNSRVMELLQLDCHLVAMILVEAITIQEAHKEVFGQELAWLNILAPMVCGHLQ VLSDIPVVSSLNFQYQHPMNVVPGIPQMSHRFTGPGASSSRTGNLENRIIGSEEFSAR NVVATSFPDAVPPAALDMRHLIPEPSSWNVDGRATTIPGNVPSSSRANTNSMVNPPAG SPFIAHQNLHRRNPRNLSEEISRLSGALRGHQHPRLRSGFLLERQGDGVWGVPLSTRS REGRRLIEIRNALEMIHRGENVRFESIFYGGVDIHDRHRDMRLDIDNMSYEELLALEE RIGNVSTGLSEEEVTKLLKQRKFSSWRLEASVEEEPCCICQEEYVDGDDLGTLDCGHD FHVGCVRQWLVVKNTCPICKNTALKS</aaseq>

Gene Sequence

<dnaseqindica>2217..2534#2600..2992#3080..3220#3823..3873#4323..4400#4474..4617#5100..5231#gtctttctccttctcctcctccttcctctcgctctctcctccttgacaaaatttcctccacccattcccttctccacccaccctgccgatctctctgaattcggtcgcctcctccgcaccatctttctctcctcctctcttctagcaatcggtcgtttcctccggttgttgtgctgattcttcgttctttctctccctctctctctctttctttcttcctctctctgccttggagaggatcaagaaacgaagggagggaggagaggagaggagaagggaaatcgagaaaagtctgttctttggtttggctcgtgtggttcttgagagctgctgtttggaaaatctctgcacctgttgctggtacggtttgctgcatctctctgtgtctatgtttttgtttaatttctcttgttcttttgattctgcatggtggcctgccatactctttggttggaaatctatggttcctttgcaatacatgtcctttcttgtgttgattctttcgtggttcatcccacgagatgttttctacagtccggaatgtgtcaaatgctattaaaccgtgaaaaattcgtgtttttctttttcataaacacatttcttcaaactttgtaaacggtacgtttctctttgcttggtgttacggtgagaaacagagatgacttggtgttcttggttggttaaattcctccctgtgttggttgcctttcaatttcgtcacgagaaaatcaacctgtcccttgaaaccgtggatcgccgcttctaccttttctttccgtttgtcttttttacttaaaacttcttttttttttgcaaaccgaaaaggaagggaattaaatgcaaataaaatgagagtagtagtagtatattttttggattgtccacagaggcaatggggcccatcttgcatgcagtccatctgtttaggtcgcatgcaatgtacaatcaccgtgtctcacactcattaaattgcatgcatcagcacaacctttgcttacaacagcccaaaccatcaagtttggtgcatccatatacctcaccaaatgcggttcatgccaagattgctacagtaaaattagttaatgctctcatcaatgacagaatgaattgctattctgtaaaacccaaactagtcttcctgcttctggatagtaacccttttatcaaaaagaataactttctgatagccgagtcatgaacaaaagatttgtctgttcacatttctatagatgttaattagttaaagatagtatataacaataggattagacttgcgttgttcagtaacataatgactgaaattcagcagaacctagcgtgtgatgaaccgtagcattcaacattccttcaatttgagactgtttgtttgcttcttctgtacgggcaatgctaagaacatattttttacccaaaattctaatatcttacaatctttcttacatttgcagaccacttgcttcaattgttgaaagagatgaacagcacctgagatgctattgccagacatcaattgataaagagcacatcttcagtaatgcaaggacagaagaactctgttgagcagcttgctgatgtgtttggatttgaccatgcatccagttcaggaaaccctgtcatggatcaacaaggatattggaacaacattcttggttcagtggagtcacataaccttcaaggttatcaggtgaaccgtagtgatggaactattccctatggaaacggtgtgcatcaaaatggcacttttttaggtttttgggaatcaggcgaagcaagtgcaagtggcagttcactacattttgggggctctaatgagatcaaagctgagcaacgtaatatcggtggtggcctaaggattggtgaaaggcgcttggtagctgagcgcaacctttctttggataatgttgatataggccttaacatcaatggtaatgatctatctggtgaaaattcaaatgtgaatggtgcttcacaaggctctgaactacatggtggctgctctcatactggttcaaatggtcaagcctctgagctgagattacatccatacaggacattcatattaggtgcagatcaacctgagccttttaattctttgaatggcagtgaaaatcctttaggtgatttttccttgatgccagaaggcattgatcagcgaccaggcagttccctggatggccgccggctggcatgcaagaggaaaaatatagaaggagttaatgggcagtgctcggcaggtgctagcactagtttttcccacaggaacgatagtattttccataacattgcttcttcgagtcataatccctctcctagtacaaatttaccctctcctaattgtctgttggttccaagcactcttgatgaacaactcccgcgttatggagctactacagctggattgtcatctagtagctatgatcctagtggaggcaataacaattcaggaggctcacaaagaagttttcggccaagaactagcctggctcaacatattggcccctatggtgtgtggccatcttcaagtactatcagacattccaattcatggaatcatcagccacctccctttcagagttcatttgatgaaccaccggaggtaattccagtggtcagtagcctgaactttcaataccagcatccaatgaatgtcgttcctggcattccacagatgtcacaccggttcactggtccaggggcctcatcatcaagaacaggcaatttggagaacagaattattggtagtgaggaatttagcgcgaggaatgtagtggctaccagcttccctgatgcagttcctccggccgcactagacatgaggcatttgataccagaaccatctagttggaatgtagatggcagagctactaccattccaggaaatgttccttcttcatcgagagctaataccaattcgatggttaatccaccagcaggctctccatttattgcccatcaaaacttgcatagacgtaatcctcgtaatttgtcagaggtagcttttcgcctgctcagttcaatatgttccattttcaaatcgatttatcttttagtaatcttcttgcgtttttttcttttataggagataagtcgtttatctggagctcttcgtggccatcagcacccacgcctaaggtccggttttctgttagaacgacaaggtgatggtgtttggggtgttccgttgtcaactaggagcagggaaggaagaagattaattgaggtatcaattctgctctctttttttcccttctcttgcctgccttgtttctgaactaggtcagaaatcagaataatgttatgtttacatccgtttagtggacatacagaagcatcattaggaataatattctgacgatcttctaaatctcatttcccctttgatctcacatgcttcttcgcatgtctgcagccatccacctaattctgcggtggaaagataaactttagtttctcaccaatctgaaaatgttacggcagttgctaaattcccccccccccttacgcaccatcatcttgtacctagtagtgacacttaattttattaactcaacagagagagagagagagagagagagagagagcacatatcttgttttggttttaaatgacacagtggattaatagttataaaattcaatggaccgtttaccttatgcatgctacgttttgtttctagccgcatgttattctctagaactatgtggcttggacaggcaataactagtgagccatccatgttggatgcgtcgttcatttatttacttgtgtaaccatgaagtctatgcaagacaatatgtttcttacctttttgcttgtcaccagatccggaacgcgcttgaaatgattcacagaggggaaaatgtaagatttgaggtcagtaacaactgtggtttcggagttacctacagttgcctatttttatctgcacggacttgtagagattgatgaaactatattatgtcctaaaaactcacagcaagactggctgactaatactagttgatgctaggattacataaggtttgctctgtccattcagtttggatgtagaggctggattctaatccattttataaaagagagatcgcataaggtgttgttttgtttctgaaaacagaagtttcttgtaatatggaaatagtatatagtgaatgcatgaaagaccatagtatatctataattcagaaaaatatagtcatcatttcaacagagagaaacaaataggcaacaacttgcactgaacccttttttgttttctaaaatctttgcttatttcttgaggtatttactcttgcttccacgtatatctgttcttgctacagtccattttctatggtggagtcgacattcatgacagacacagggatatgcgccttgacatagacaacatgtcttatgaggttggttttccttagcacaatattatctggatctttctccagcaaaactctgataattgctgttgtcttccaggagctattggcactggaagaaagaataggcaatgttagcactggcctcagtgaggaagaagtgacaaagctcctaaagcaaaggaaattctcatcatggaggttggaagcatctgtggaagaagagccatgctgtatctgccaggtataactcaggcctatcagaagcttgtgacatagtttcctttgtttagttaacttgaaatctagcaggttcagtgctttgtgcatttagctttgttaattgtacgccatacctaataggtgacataagcctgtgagtatgtccattttaacttgaaaaacactcatctatcaataatgtagctgtaattatcaattaagtcggtcaggcctgtgaaccactaccagttggacaacaatgctcaacttttaaaacttgtagctgaaagttgaatatgattttgttcaagattcctagtgctgcatatactgacctacccaagcaaatatcttaccttgggatacacttgaggaattgtctttgctcaatatcttcctttttcttcattgtcttcttaaatcaatgaaaagttttggcaattctgcaaactaataattcatattgatgtcttctaactatgttcgttctcgctgtttatccaggaagagtatgttgatggggatgatctcgggacactggactgtggacatgacttccatgttggatgcgtcaggcaatggctggttgtgaagaacacctgtcccatatgcaaaaatactgctctgaagtcttagaaaaagcacagggcagtaaacactgtgtgcttgttcgatcgcaagatcgtttagtgattcatattaccgtgccgttttttgattagaaattttttttgccattgacctacaaatttgattaaaaaaaaaggtaaaagaactggtccctgcaaactgccccctcctgcagtaaataatccctggaatctgtcgctctgcattcaactgaatatttatggctggtatattggatgatggctcaatatttttttc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0648800, RefSeq:Os04g0648800