ORF1

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Annotated Information

Evolution

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Labs working on this gene

callus UVB iradiated callus, immid after treatment

References

1

 AUTHORS   Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
           Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I.,
           Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C.J.,
           Ohtsuki,K., Shishiki,T., Otomo,Y., Murakami,K., Iida,Y., Sugano,S.,
           Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T.,
           Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A.,
           Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J.,
           Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R.,
           Ueda,M., Matsubara,K., Kawai,J., Carninci,P., Adachi,J., Aizawa,K.,
           Arakawa,T., Fukuda,S., Hara,A., Hashizume,W., Hayatsu,N.,
           Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H.,
           Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K.,
           Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M., Hayashizaki,Y.
           and Yasunishi,A.
 CONSRTM   Rice Full-Length cDNA Consortium; National Institute of
           Agrobiological Sciences Rice Full-Length cDNA Project Team;
           Foundation of Advancement of International Science Genome
           Sequencing & Analysis Group; RIKEN
 TITLE     Collection, mapping, and annotation of over 28,000 cDNA clones from
           japonica rice
 JOURNAL   Science 301 (5631), 376-379 (2003)
  PUBMED   12869764
 REMARK    Erratum:[Science. 2003 Sep;301(5641):1849]

REFERENCE 2

 AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
           Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
           Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
           Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
           Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I.,
           Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M.,
           Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M.,
           Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
           Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M.,
           Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A.,
           Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakahama,Y.,
           Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
           Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
           Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
           Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
           Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
           Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
           Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
           Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
           Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J.,
           Yokomizo,S. and Yoshimura,A.
 TITLE     Collection, mapping, and annotation of 28K full-length cDNA clones
           from japonica rice
 JOURNAL   Unpublished

REFERENCE 3 (bases 1 to 3449)

 AUTHORS   Kikuchi,S.
 TITLE     Direct Submission
 JOURNAL   Submitted (31-JAN-2003) Contact:Shoshi Kikuchi National Institute
           of Agrobiological Sciences, Department of Molecular Genetics, Head
           of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki
           305-8602, Japan

Structured Information

{{IndicaGene| GeneName = ORF1| Description = This clone is one of the 32K full-length cDNA clones from japonica rice. Protein of unknown function DUF625 domain containing protein;(Rice Genome Annotation Project) expressed protein;mapping to R05-TIGRv4S1-000179F (Chr.5: short arm=3301101,long arm=3312326, direction=forward) for TIGR Pseudomol ver4| Definition = Oryza sativa Japonica Group cDNA clone:001-133-D06, full insert sequence.| ACCESSION AK119449 VERSION AK119449.1 GI:37989072 KEYWORDS FLI_CDNA; oligo capping. Length = 3449 bp| Source = Oryza sativa Japonica Group (Japanese rice)

                     1..3449 organism="Oryza sativa Japonica Group" mol_type="mRNA"cultivar="Nipponbare"db_xref="taxon:39947"clone="001-133-D06"

 ORGANISM   Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.

| Chromosome = Chromosome 5| AP = Chromosome 5:46289509..46292130| CDS = 46291834..46292130,46291618..46291722,46291453..46291526,46291309..46291367,46290712..46290749
,46290433..46290553,46290270..46290338,46290093..46290175,46289861..46289929
,46289709..46289771,46289509..46289622| GCID =</Ng.2923-F1.jpg> name=IndicaChromosome01:46289509..46292130 source=RiceIndica01 preset=GeneLocation </gbrowseImage1>| GSID = <gbrowseImage2> name=IndicaChromosome01:46289509..46292130 source=RiceIndica01 preset=GeneLocation </gbrowseImage2>| Link=http://cdna01.dna.affrc.go.jp/cDNA/ CDNA = <cdnaseq>ATGGCGGCACACTCCCACGTCATCCCCTTCCTCTCCCCGGCGGCGACGTCCGCGCGCTGCTCCCCCTACGGCCACCGCCGCCGCGGCCGCGCGGGGCTCCTGCGGTGCGCGGCGGCGGCGGGGCAGGCGGGGTTCTTCACCCGCCTGGGACGCCTCATCCAGGAGAAGGCCAAGAGCGACGTCGAGAAGCTCTTCTCCGGCTTCTCCAAGACCCGCGAGAGCCTCTCCGTCGTCGACGAGCTCCTCACCTACTGGAACCTCGCCGACACCGACCGCGTCCTCGACGAGCTCGAGGAGGCTCTGCTGGTGTCGGATTTTGGCCCCAAGATTTCGTTCCGGATCGTGGACACTCTACGCGAGGAAATCCGCGATGGCAAGCTCAAGTCTGGGGCTGAGATAAAGGAAGCGCTGAAAAGGTGTATTCTTGAACTGCTGACGAGCAAAGGCGGCAATCCGGAGCTGCAGCTCGGTTTCAGAAAGCCGGCAGTTATCATGATTGTGGGAGTGAATGGAGGTGGAAAGACTACCTCATTAGGAAAACTTGCTTACAGATTCAAGAATGAAGGAGTGAAGGTATTGATGGCAGCAGGTGATACCTTCAGAGCAGCAGCTCGTGACCAGCTAGAAGTTTGGGCAGAGAGAACAGGTTCAGAGATTGTTATCGATAATGATAAGAAAGCAAAACCTGCATCAGTTCTCTCGCAGGCAGTGAAGCGCGGGAAGCGTGAAGGATTTGATCTTGTTCTTTGCGACACGTCAGGACGACTTCATACAAATTATGGTCTGATGGAAGAATTGGTTTCCTGCAAGAAAGTCATAGCTAAAGCCCTTCCGGGTGCTCCTAATGAGATCTTGCTGGTTCTGGATGGCACGACTGGCTTGAATATGCTACAACAAGCGAGGGAGTTCAATGATGTTGTTGGAGTCACAGGATTCGTCCTAACAAAGCTTGATGGAACTGCTCGTGGTGGTTGTGTGGTTAGCGTTGTAGATGAACTTGGAATTCCAGTAAAGTTTATTGGTGTTGGTGAAGGGATGGAGGATCTTCAGCCTTTTGATGCTGAGGCATTTGTTGAAGCCATTTTTCCTTGA</cdnaseq>| AA = <aaseq>MAAHSHVIPFLSPAATSARCSPYGHRRRGRAGLLRCAAAAGQAGFFTRLGRLIQEKAKSDVEKLFSGFSKTRESLSVVDELLTYWNLADTDRVLDELEEALLVSDFGPKISFRIVDTLREEIRDGKLKSGAEIKEALKRCILELLTSKGGNPELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRFKNEGVKVLMAAGDTFRAAARDQLEVWAERTGSEIVIDNDKKAKPASVLSQAVKRGKREGFDLVLCDTSGRLHTNYGLMEELVSCKKVIAKALPGAPNEILLVLDGTTGLNMLQQAREFNDVVGVTGFVLTKLDGTARGGCVVSVVDELGIPVKFIGVGEGMEDLQPFDAEAFVEAIFP</aaseq>| DNA = <dnaseqindica>

1 agggaggaga gctcgctcgc tcgctcgctc gtgctcgtca atggcgggta gggtttcgcc
      61 gctgccctcc tcctcctccc gctgctagac ctcgccctcg ccctcgccct cgccctcgcc
     121 gccgccgccc cccgatcccc gagtccgccc cgatttccat ccttccccgg cggtgaggca
     181 ggcctagggc gggcgacgat gggggaggag gagcaggggc cccggaggaa gcaggcgggg
     241 ccggacgacg cggtgcagat cagcatgcag cgagtcaaag tgtaccgatt gactgatgat
     301 gggaagtggg atgatcaggg aacagggcat gttaccatcg actacattga gggatcaaga
     361 gaaattgctc tgactgttgt ggatgaagag gatagtgaca cgctactgct tcatcacatt
     421 acatctgatg atatatacag gaaacaagaa gaaacaatca tctcatggag ggatcctgaa
     481 aaggcactag agttagcatt gagttttcga gaagctgctg gatgttcata catatgggag
     541 agtgtgtgta ccatacaacg aaatttacaa tttaatgtcc ttgatgttca agaagccgct
     601 ccacccgcag catttgaatc tttagaagcc tctagaaatc caccttttca tggtagatga
     661 gtccttaagt tctaccagca gagaattaaa gaaacttccc cctcttgatt tgtccagtct
     721 atcttccatc ttaaagacta tattggagtg cagcatgaca gagcggatgc gtgtttctgt
     781 tgcagagtta atattacaat atcatgattt cttcccccag ctagtgaatc tttttagaac
     841 gtgtgagagt tcaggaaaca tgggtgcact ccacatgatc tttagattag taaagggaat
     901 catattgttg aacagttctg cgatatatga caagattttc tctgatgatt ttattcttga
     961 gataataggc gcacttgaat atgatccaga ggctcgcact gtgcaaaatc atcgcacttt
    1021 cctgaaggag catgtagttt tcaaggaggc tatacccatt aaaaatgctt ctgtggtttc
    1081 aaagattcat caaacataca gaataggcta tataaaggat gttatattac caagagtact
    1141 tgatgattct accatggcaa gcattgctgc aatcattcat gcgaacaatg ctgctgttgt
    1201 ttgtttactc aaggacgatg cttcttttgt aaaagaactg tttgctaaga tgagatcttc
    1261 gaatatttct gctgaatcaa aacgcgaact ggtcctgttt ttgcttgagt tttgtactct
    1321 cactaaaagt ttgcaggctg ttcagcaatt acgtctatct agggatcttg ctagtgaagg
    1381 tgtgtttgac atcatgtctg atgtgttgca gagtcaggat aaagtgctcg tctcagctgg
    1441 gacagacatc cttgtatatt ttcttaatca agatcctaac ttactgagat catatattgc
    1501 tcgtcaagaa aattctcaag aaggaaattc acttcttggt cttctggttc aaggcatggt
    1561 aactgacttt ggtgagggaa tgcactgtca atttctggaa attttgaaga ttctgatgga
    1621 tggatttgct acaaatatgc ctacaaacta tagaggagtt attgatgttt ttcatgaaaa
    1681 gcatcttgat aagttgattg atgtaatagc attggcttcc tcccctatgg acattaccca
    1741 atcaacatct agtccagttg gtgtgggtac aagagttgaa aaccattctg tgaagactga
    1801 aatactgtct aacatctgcg agcttttatg cttttgtgta gttcatcacc cctacaagat
    1861 caaggtcaac tttttaagaa gcaattccgt ggagaaaatc cttactttaa cccataggag
    1921 agagaaggtt ttggtcgtgg cagccgtccg attcatgagg actgttattg ctagaaatga
    1981 tgagcttctt cttagccatg ttatcaagtt caactcattg aaaccaatta tcgaggtatt
    2041 tgttgaaaat ggggataggt acaacatgct acattctgtt gtccttgaac tgttggaata
    2101 catacgaaag gtaacctagc gggagttatt tgccaattgt tataatgcta cataatgtgc
    2161 tgtcagttga tgcattattt gtacaggaaa atctcaattc acttgtgata catgttacca
    2221 aatccttttg ggaccaactt gtgaggttcg aaaaactagg gagcattcag gcctttaaac
    2281 tcaagtatca acagttaatg gagagtggtg aaacaacaca aagtattagt ctagttgaca
    2341 tgagaaagaa gccagaagaa agaggtctcg acaaagaaga ggaggactat ttcaacaagg
    2401 gcagtgatga ggaagattct gataaacaga catcatatgc acagaaggaa tctttggata
    2461 agttacccaa gggaagtgac atccgtcata tccctgcaag gtacattatc tcatcttcta
    2521 taacttgcga taacttcctg ccaactcata ttgaagattt atttactggc ttcttcttct
    2581 ttatattcat aataacttgt tacgttttac attctgtgcg cacattatgc aatttctgga
    2641 ctctaaaaca tacttcagtt ccagtgttta gcagatcttt tgttttttca ggtctaaatc
    2701 tggtgggctt gtggattatg acgacgatga tgagggttac aacccacctc ccaaaagggc
    2761 tgttaaagct gatgaggatg atgaggcctt agtcataaag cgtaatccag tggatgacaa
    2821 acaagctgat gggaggtctc ccaaaaaacc aaagatggaa cccagattta tctgctcaaa
    2881 gattgtcgct gcggctagtg tggcaggcag acgctcgaat ttggcagata aacagggtcc
    2941 ccatccacct tcctcaagca cgaaaacttc tgaaggcaat ggtgatgtag gggaggaagg
    3001 cccaggttct cagaatctac aacatgaccc aggaagcttg gattccactc atcaaaatgg
    3061 agatgactgt accaaagatg cagggaactc gccttccgag atgactgtaa atacatcaaa
    3121 agcaactgat tcagagcctt attcagtgag atgacaataa atattttttt tcctctattg
    3181 gcttcaagtc gattgctttt ccttgcgacg aaaaggaatt gcttcacatt tggctccgaa
    3241 gaaggtcgtt gaatccatag cattctgacc ctcgagccag caagcatggt cggaggtgag
    3301 atagttttgg tcaaagttgt atatctcaac cgcgatttcg gctcagctga acatgtaaat
    3361 tgacactcaa agagaagaat accaagctga gaaccaacat gccatttggt gctgcactat
    3421 agacaaaaag gagagggtct tgctgtttt</dnaseqindica>|