Os04g0658000

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Revision as of 11:32, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0658000| Description = Similar to Possible apospory-associated like protein| Version = NM_001060661.1 GI:115461051 GeneID:4337265| Length =...")
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Gene Name

Os04g0658000

Description

Similar to Possible apospory-associated like protein

Version

NM_001060661.1 GI:115461051 GeneID:4337265

Length

6117 bp

Definition

Oryza sativa Japonica Group Os04g0658000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:33956086..33962202

Sequence Coding Region

33956306..33956464,33958763..33958837,33959223..33959279,33959371..33959531,33959690..33959830
,33960080..33960182,33960271..33960370,33960481..33960719

Expression

GEO Profiles:Os04g0658000

Genome Context

<gbrowseImage1> name=NC_008397:33956086..33962202 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:33956086..33962202 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtcggcggcgtcggcgtcggcggccggaggggcaggcgaggagggcgccgccgccgccgcgcagccgcagcaggaggggccggtggtgacctgcaagggcgtgaacgggctcgacaaggtcgtcctccgggaggtccgaggcagctctgccgaggtgtacctgtatggcggccatgtcacatcatggaaagatgagcatggagaggagctgctttttgttagtaataaggctattttcaaacctccaaaagctatacgtggagggataccaatctgctttcctcagttttccaacttcggaaatctggacccacatggctttgcaaggaacaggacctggagtgttgaaaatgatccaccaccatttccagtaccaacttctaataaagcttacgtcgatttaatccttacgcatactgaagaagatctaaagatctggccacatagttacgagttccgtctgagagttgcacttggacctggtggagatctgatgctgacttcacgtataagaaataccaatgcagatggaaagccattctcatttacatttgcatatcacacatacttttcaatatctgatatcagcgaggtgcgagtagaaggcctggaaactctggattacctagacaacttacaagagagaaatcgatacactgaacaaggggatgcaattgtttttgaatctgaattggacagaatatatctgggcacaccgtcaaaaattgccattattgatcatgagaagaaaagaacatttgttgtgaggaaaggtggccttcctgatgctgttgtttggaacccttgggacaagaaggctaaggctatgtcagactttggggatgacgaatataaacgcatggtctgtgtggaggcagctgctatagaaaagccgattactttgaagcctggtgaggagtggactggaaagttggaactgtctgctgtcccatctagctattacagtggtcagctggatcctgatcgtgttcttcaggattcaagtgtcccggaggactcaatcagctag</cdnaseq>

Protein Sequence

<aaseq>MSSAASASAAGGAGEEGAAAAAQPQQEGPVVTCKGVNGLDKVVL REVRGSSAEVYLYGGHVTSWKDEHGEELLFVSNKAIFKPPKAIRGGIPICFPQFSNFG NLDPHGFARNRTWSVENDPPPFPVPTSNKAYVDLILTHTEEDLKIWPHSYEFRLRVAL GPGGDLMLTSRIRNTNADGKPFSFTFAYHTYFSISDISEVRVEGLETLDYLDNLQERN RYTEQGDAIVFESELDRIYLGTPSKIAIIDHEKKRTFVVRKGGLPDAVVWNPWDKKAK AMSDFGDDEYKRMVCVEAAAIEKPITLKPGEEWTGKLELSAVPSSYYSGQLDPDRVLQ DSSVPEDSIS</aaseq>

Gene Sequence

<dnaseqindica>221..379#2678..2752#3138..3194#3286..3446#3605..3745#3995..4097#4186..4285#4396..4634#gcgtcgcaagcatgcgtttctaggagaaagtaaagcttgcgtttttgagactaaagcttgcgttttttgttttttaattgtggagtttgggaggaggaggggaaaaaatcgcgatcaggaaaaggcatctcgagaataattatttaagtccccagagcgagcagtgacgcgaaattccccaggagagatctccatctccacctccactgctcaggcggggatgtcgtcggcggcgtcggcgtcggcggccggaggggcaggcgaggagggcgccgccgccgccgcgcagccgcagcaggaggggccggtggtgacctgcaagggcgtgaacgggctcgacaaggtcgtcctccgggaggtccgaggcagctctgccgaggtaagactagtactgccccctccactctctcgattcagctgtcagatctcgccgcagatccatggcgctgcttgtagttgctcaactgctgttcccatcgcttaccatgctcaagtactactcttgcagtgttttttttttttttttgggtgagagataggagtggtttgattgccgggaagcttgtggttcgactcgttgtaggcgacagatcggtgttctgaaatcagtctgggtctcttgcattcagagtggagagtatttgccttctcactttgcctccattgacgagttgtggttggaaatacatcatccatttattttatttttttttgtaaggcgcaattgtcaaaacttgacctttgacctctagtttccccttgcaacatattgattgtgcgaaacagtggaagtactttagaacatgatgaatctgttggtaccactgtcttatccatagacatataaatatttcaactaaccgttgatcaacagatacaatgaattatgtgcgtttcttataaactaaatggtgggagtaacaaataggattataaaaatggctcaatacagtgtacaatggtgcttctataacccctgaacacatgagggtggtgaacattctctttatagaggggtaatttactcatatctggggtctgaggaaaatccaggttagcagggagggggtatacacttcagttgcaataaaatgttttttttagtcaacttaaaaagcaacataagaaaatcttcatactcttgctagtgaccctttataatcaacacttcttgttgttgggtacgcggatgcctcatattggttacagcctgagagtgctcttttggcctaaaatggtagacccaagaaagataggttttttcatgattatctcagctgctaaagactaaagagtctgaagagtggattgtgggacctcatgcacttggccttttaggagacaataaatgatggaattttacctgaggaggtatataaaaatgatagtgacacagcctgctcgatcttagcatagcgattttggcaagcgagttgtttctttggctgatgttatggatatcatgggcgttttattgtagcttctggatttgtgggtcaaatatctagctactatgttgtttggtgtacgcttagtacaagattccaaaatcgtattatccgtattccatagaaataatttttgacgcaaattccatagaaattatggatgttatcaggccaaactggtgggatggagcccatgctaccattcatcacgtcacttgaggagcctctttcatttttcctccagttgcatactttgctttatgctatctctgatgatgagtagcagggccaccatttgtgctgttgccatggtattattttcagtccaatacggatagaagctcatggatcaacactggtagaagagaggtgagaacgccagaggatggtttgagttgatggagaaacgatacgccggtgtctaactggtcatgtttgctactggtcctggtcttcttgtgactcaactagtcggccttactgaggaaatatcctcctatattcatccgatacctattatcccacttagactttccagaactcatcctaaaacttgcttcacctacaatttggatgttggatgttcgcttgttgacattaactaggccagccccatgttttttggcgaattagatgtataacaagaagcccatgttgtttgttgaatcagatgtataccaagaaggcatatggagctaagtaaatcatgggcatatatgctatagtgctattgcataaggtctgactattggaagctcaatgccaagacttccacattgattttgacaaaataacagtaagctaaactattcattcttgagtttaaaatgaagatactatagtacatctatctattggtcaaagatattgtaatacatctatctatcgatttttttatgggaacaataggagatatccccactgaacatatttattttatttgggtatcaagaatatgaattactagaaattatatcattctgaatagttattgattatcagaaacatagttagtggatgggcatcagaaggacatgccccaaaagctaatcagcataataagctcattagaactccacatgtgcatttttgtgactcatctctttatatatatctagttctttgcttctgtcctggctacataggacttatttcttttttcttgtatgtatcctgttccaaagtccaaacatatggttatttagtatttctactcttgctgctttcaggtgtacctgtatggcggccatgtcacatcatggaaagatgagcatggagaggagctgctttttgttagtaataaggtgatattatttcctatctttagtatgggcaattgggcacatctcagtgcctctaaaattcttccatcattgttttggctgtaccataagcctgtctgagagactgatactaggctaattcaactggtagaatatgatccttacccttaatttcattatcatccagacatgcatacctattctcataaaccatgtacctctttgttatcgtccaccttatgtttttgtggtaatgatgtgacaaagattgtattgccacatccctgctactcatttgacctcgacatggcaataaaatttgattatgaatcttactggatttttttattccatgtatttctttaattgcctaagagttgcttggctgatgcctgtgttctctcaggctattttcaaacctccaaaagctatacgtggagggataccaatctgctttcctcaggtccgtgcttttcctttcctgcattttttttttgctcgtaatctcttccgctttctcaaattttaattttgctcagtacttcgtattctagttttccaacttcggaaatctggacccacatggctttgcaaggaacaggacctggagtgttgaaaatgatccaccaccatttccagtaccaacttctaataaagcttacgtcgatttaatccttacgcatactgaagaagatctaaagatctggccacataggtgggcatatactaaataattacatgttaatagtaaattaattaccattgtaagataattgaaagtttttttccctctatttcttatcatataattgttttagtagaagacaaggtagctgttcacatggatcagtaaaagcaaatcctttatttcagttacgagttccgtctgagagttgcacttggacctggtggagatctgatgctgacttcacgtataagaaataccaatgcagatggaaagccattctcatttacatttgcatatcacacatacttttcaatatctgatatcaggtacacttgtttaactctcgacaaagcccatcagttctgaaaaattcatttcaaaggcacagtgcagtattggaagtgatcatgtttattatccacctaatatgtttgtctaaaatgtgggcttaattaatggaaaatgtttctgtatgtttatccacaatgaagaattccttttccatttcaaatgtatttccatagacatacagaaacaatttcttcattgtgcataactttatgctaatatttcagcgaggtgcgagtagaaggcctggaaactctggattacctagacaacttacaagagagaaatcgatacactgaacaaggggatgcaattgtttttgaatctgaagtgcgttaacaaaacatttgaaccttacactatccttcatttttctttgcattctaactaaggaagcaaatgcaaacttattgtacagttggacagaatatatctgggcacaccgtcaaaaattgccattattgatcatgagaagaaaagaacatttgttgtgaggaaaggtggccttcctgatgctggtacagtcaatgatggtctttatttgcttacaagttacaaccataataaactatctttgttataataaatgaaaaaaaaatggattgtgttggttatttcctggttgtagttgtttggaacccttgggacaagaaggctaaggctatgtcagactttggggatgacgaatataaacgcatggtctgtgtggaggcagctgctatagaaaagccgattactttgaagcctggtgaggagtggactggaaagttggaactgtctgctgtcccatctagctattacagtggtcagctggatcctgatcgtgttcttcaggattcaagtgtcccggaggactcaatcagctagtccttagtggatatttgtccaggtaacatttctactaaagtatcagacttggtcctgtctttgagttgtgaacatagattagtaaatttctgtgcaggcaagtaagcggcattcttctagtagtatggtcctatgtaaaaaatgtctacatagtattgcatgcagactagaagacgtatgatggtcctgcataaagttttcaacatagtttacatagaaaataggcatgtaccatgcatagcccatattatattgacgagaatcctttttttaatctaatcatctccgtactgttttcttgtggaagcctgccattatttatagaaattcttaggtgacgtgccagattgccagagtatgcattgtaattgtgatatctagaccagttcaagtgtccggctttggagtggtctgtggtcagttagcatatacataaacacccagaatttgacggcaagcagaccagttttttttgtgaggaggttatattaacaaggaaaaagctcttgtgcttgagctggtgggtactctctctatctgtactgtagagtgtgctttgagattcggaaatttaaaaccatgcctgactttttccttttaatgtgattttcatgcataattggtagtccagtacctgcaaatttttgaaattttagcgtttgtaatgtttgaaggagacagagaatatttggaaatgctaacagtgaagaaagctgttgcgctatcatcaagtgtctcctattggagttaaatctgcaatctagagatatatggggggcattttgcaccaatctcaaacagcaaggaatggtgcatgttcatgggttacctacccttcagtcttttccccttcagggtatcaaaatcaggggttagggcctaggggagactcgaggctaacttaaaatggcatctgcatactatctggggatgccaaatagtgcgcattattgttttatttgcttgcagttgtgaatgaagtgatgctgtaaactctgcacttttggccttttgggcatgtacatgtattttttcaccgcacatttcgctaaaattttgtttacttgctttgtactgaccttggcatgttcttttgttgtaggtagactattatatcatatgcataagggacattggcaacaaggagtgtcaaaacgtttattccattctattcaaatctttgttgttttttggcatgcatatctgaactgaggaatttcaaaattgatttacgttttgatatctacataacgtaaggggacgggtcggtattaataccctgtatatgcatgtttgaagtgagaaacatctcattgggttgtaaaataaaaatcaatactgtatctcttttttgatcggcaccttttccattctaatatcaagtaaaatagtacacctacaaaacgtagtcacctgtcctacgaacgtgcatatgaggtataaacattctgagcttggttaaaaccaggacttgtttggatcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0658000, RefSeq:Os04g0658000