Os01g0100100
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Contents
Annotated Information
Function
Please input function information here.
Expression
This gene is expressed in leaf epidermal cells, root, vascular tissues and stomata, with a molecular mass of 20–25 kDa.<reference 4>
Evolution
- The average G+C content in rice is higher than in Arabidopsis, but there are no any CpG islands in chromosome 1, indicating a neutral nucleotide distribution in this region. Also, there are a lot of tandem repeats. Some predicted genes were functionally characterized by homology to known proteins using BLASTP. All most all of these genes are also found in Arabidopsis.<references /5>
- This gene encodes Putative GTPase-activating protein, and molecular function is Rab GTPase activator activity, which is homologous with Arabidopsis thaliana. Also, it is conserved in human, chimpanzee, Rhesus monkey, dog, cow, mouse, rat, chicken, zebrafish, fruit fly, mosquito, C.elegans, S.pombe, rice, and frog, and this gene is the one of this super-gene family.<references /5>
Labs working on this gene
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References
<references>Takuji Sasaki, Takashi Matsumoto, Kimiko Yamamoto, et al. The genome sequence and structure of rice chromosome 1[J]Nature, 2002, 420:312-316.
Structured Information
| Gene Name |
Os01g0100100 |
|---|---|
| Description |
RabGAP/TBC domain containing protein |
| Version |
NM_001048268.2 GI:297595880 GeneID:4326813 |
| Length |
7585 bp |
| Definition |
Oryza sativa Japonica Group Os01g0100100, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 1:2167..9751 |
| Sequence Coding Region |
2449..2616,3357..3455,4457..4560,6136..6997 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008394:2167..9751 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008394:2167..9751 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgtcgtcggccgcgggccaagacaacggagataccgctggggactacatcaagtggatgtgcggcgccggtggccgtgcgggcggcgccatggccaacctccagcgcggcgttggctccctcgtccgtgacattggcgacccctgcctcaacccatcccccgttaaggggagcaaaatgctcaaaccggaaaaatggcacacatgttttgataatgatggaaaggtcataggtttccgtaaagccctaaaattcattgtcttagggggtgtggatcccactattcgagctgaagtttgggaatttcttcttggctgctatgccttgagtagtacctcagagtataggaggaaactaagagctgttagaagggaaaaatatcaaattttagttagacagtgccagagcatgcacccaagcattggtacaggtgagcttgcttacgctgttggatcaaagctaatggatgtcaggactatgtcaaaagaaacccacattgcagaagaagttagcacaagtcaacaaacttcacaaaatacagctggcagtttagtagaagattcagattatggccccggtggtgcacagcagtcacaaaaaagggaaagctgtagtaaatcagctgaactagttggtttcaacgtacataatgatacctctctttatgattcttccaattttattgtgtcttctacagaagtgaataattgctcaaaagattctcaggattacaatgacatgggtgaaccaagatatgacactgagaccttcgatgattatccttctctacctgttacaaattttttctcaactgatggtgtgggcagcaatggagttgataaaaatcattgtagtttctcagttcctgaagatagattaaggcaccgtgatgaacgtatgcacagcttccaaatcaataataacatagatctcattatagagtcaaattcatgctccagtgatgtgtttagggctagcaacagtgattcagccatctttcactcagatgcatacaagcaggatagatggttagatgataatggctataacagggaagttatagattccttgaggatatctgatgcaccagaagcagattttgttgatggaaccaaatccaacagtgtggttgccagcaaagatcgagtctctgaatggctttggacactgcaccgaattggtatgctctattttttcttcacttcatcatgcaattacagtggtatcttgtga</cdnaseq> |
| Protein Sequence |
<aaseq>MSSAAGQDNGDTAGDYIKWMCGAGGRAGGAMANLQRGVGSLVRD IGDPCLNPSPVKGSKMLKPEKWHTCFDNDGKVIGFRKALKFIVLGGVDPTIRAEVWEF LLGCYALSSTSEYRRKLRAVRREKYQILVRQCQSMHPSIGTGELAYAVGSKLMDVRTM SKETHIAEEVSTSQQTSQNTAGSLVEDSDYGPGGAQQSQKRESCSKSAELVGFNVHND TSLYDSSNFIVSSTEVNNCSKDSQDYNDMGEPRYDTETFDDYPSLPVTNFFSTDGVGS NGVDKNHCSFSVPEDRLRHRDERMHSFQINNNIDLIIESNSCSSDVFRASNSDSAIFH SDAYKQDRWLDDNGYNREVIDSLRISDAPEADFVDGTKSNSVVASKDRVSEWLWTLHR IGMLYFFFTSSCNYSGIL</aaseq> |
| Gene Sequence |
<dnaseqindica>283..450#1191..1289#2291..2394#3970..4831#caaggagtcctcgctgaggaagctttggatccacgacgcagctatggcctccccgcccaccaggccgccagccacaaccagctgactaggtaggcttcctaggtagggatcccatcccttcgattccctactccctcccccgattgatttgatttgatttgatttaattcgattgcctgcttttcaggtcgcatgcatcatcagatttcaatctcccttcgttccctgtccctaatccaataccaatagggagcaatcagctgctcctcgacggcgagggagatgtcgtcggccgcgggccaagacaacggagataccgctggggactacatcaagtggatgtgcggcgccggtggccgtgcgggcggcgccatggccaacctccagcgcggcgttggctccctcgtccgtgacattggcgacccctgcctcaacccatcccccgttaaggttcgcctactcctactctagctccatatggatatggattcgattagctgtctacattctatgccatcaatttgttttccatcacttctcattatacatctccattgctctctaaattaaggcttctctagctctatcctatatatatactagtactccgtatatgattctgcttcatcacttatttattcatcatcataccgtgaagctgtataagtcctgttatttgtcatttggcatatgttgtatagataacactttcagcccagggactttctattgccacttttatacatatacaatcaacatttagcatatgtatatcctgtaccgctcagttgtactgctgctttgaagataatgtttgcaaaacatatgagctcacacacgaggctagatgctgcataggctgcacaatggggtagccattttgatacttcttaatgctatttatgctggtccaaatgttcattggtagcctcaggcagagaattttagggagatattatgtcaaactccctggattcactatgattatacaatattacccattcaatccattcaaataaatttccaggtcaactcacatattgtactgaaagaagactaatttgcactaatcatatccttttatccaccagagtatatgagattgtcttctatatgcaatttacttcatatcgacatttttctgcagaattgcaaaactgacgccttgttttccatctggaattgtgcaggggagcaaaatgctcaaaccggaaaaatggcacacatgttttgataatgatggaaaggtcataggtttccgtaaagccctaaaattcattgtcttaggggtgagttaattgtttcttttgtgcttcaaaaacttgttttttcatgtattttagctgttgaagggtgtggatttttttttcagtcttaatacattaccttttagagcatgatgccccacgcgccatttgtgaatgtgtaaaatagggaagatcaaatagaacgtgacaactgtttattttattaccatgatcattgttctctttgagagtgtctgctttggaaatttcaaagaaattaatgcatatgattgcgtagctctagtttttcttaaaaaaataagcggctaggctctttatactattatgtcacagagtgtttgccttttacctgtgtatgtagctaggcataaacatttgtttgtgggtaaatacaaaaaaaaatccaatgtgtagaaactgcttataaatacataaaagttacataaatacataactgcttcaaataagcaagatttgaacataccttcacataagctttcccctaactgaaaagccatttggtataaccttatagaaattagatatagtggagatgtggaatgagctgctatcaagtcttgtttcgtgaaagcaaactgacacggtctccacagcaaacacgtccacagctttgcaattagtatctttataggaaggtcaatcagagttcattggccatatcttggaaaaaaaaggcatcagattttagtttaattatgtctatattttaggcatggattattgatcatttttgcagcagactaagtttaatgcatgtagttattttccttgattagtgattagtgttgttattttctatacaccactggcactgatagatgtgctccatgctttgcaatgcatcaaaattatcatatcgtgcctaactcatgctttgcacagatatcatttttttgtgttctggcactatctaaagaattgtctataaactaggaacaataagatcgcatcgtactattcttcacattaaaacatttcttacccccaaaattgatgtgcagggtgtggatcccactattcgagctgaagtttgggaatttcttcttggctgctatgccttgagtagtacctcagagtataggaggaaactaagagctgttagaaggtttgacactttcctgttttcagtaccaggataccttttttgtacaagcataagaccgtaagagcataaatgaattgcatttattatctagaataaaatcatgaatgttacagttatgtagtactccctccattccaatatataaggatttcaaggattcaaattttgtaccacaatataaggatttctgcactgattcccataatacccatcatttcagtgattcccaaaccaatcaaatgcatagaaagggaaaagaatcttttgacctaaccttggtattggctaaacaacctagaaatctttatattttggaaaggagggagtaggtattaatttgtttgttttttgtttattgtactaaaactgaacttctaggtaaatattcctatcctttacattttccttgtgttatttataaccatgtgtgcagaatggaaaatgatattaaaagtttaaaacaaatgtgttgctatgtttatctggagtaccaatctcaatctttttcaggcactcaaagtaacttgattagggtttagggtttaccccttttcattgtgctacctcctatacacattgttggggggatgaattggtggcatcagtactcatagtttgtctatgtaacatctacttgtgctgatgttgtatgatccatttggtttagatggcttgataagtaccccgtgcctgcacacaacaatatgacagattatatcaatacatctagggtagaggtaaatgaaagactgagattctagatattgcatacaattcctaggtatttgtggtcatggcctgtgggtgatatcgggttggatatgatccaccaaacctggagcagaaaatttctaagactagttgccagaatagaattctcttggaaatttaacagttccaaacagcctgttcacaaacccattatccattcactagcaggtgctggacagaaaatatgttgttcataggggtttgaacctgggacattaaattctgtagtacgtggtagccaacagtgccaatggctctttctttgtaatggaaggatgcgtattaaagaaattaagtagatgggttggcattgcacactaattagtaatgcaaatataccttagtttattgtgatctctgtaattataattgcatatttatattcctttttatgtctaactatcgaagcgtacctgtgctattacagataaacttattacgtcatatgttcatgttgaattgattggcgtgcgattagtcctttctgtttgcatctgcttgttttattcacttgtgaccaacaaatttataaccaacatcatgtatgccatccataccaattgttgtgcgagaaattctacgttttgcctttgttaccgattctactaattgttgctgatgaatgcgaattccgtgaaatgccatcgcacaagtgtttttattcctttgtttccatttctacggagcagggcaatcagtacagttctgaaattcttgctgagtgttctttcttttgaaagtttttacacctgtgggacaattatggaagcctgtaacctcgtttatttcttcgcttctatgcagggaaaaatatcaaattttagttagacagtgccagagcatgcacccaagcattggtacaggtgagcttgcttacgctgttggatcaaagctaatggatgtcaggactatgtcaaaagaaacccacattgcagaagaagttagcacaagtcaacaaacttcacaaaatacagctggcagtttagtagaagattcagattatggccccggtggtgcacagcagtcacaaaaaagggaaagctgtagtaaatcagctgaactagttggtttcaacgtacataatgatacctctctttatgattcttccaattttattgtgtcttctacagaagtgaataattgctcaaaagattctcaggattacaatgacatgggtgaaccaagatatgacactgagaccttcgatgattatccttctctacctgttacaaattttttctcaactgatggtgtgggcagcaatggagttgataaaaatcattgtagtttctcagttcctgaagatagattaaggcaccgtgatgaacgtatgcacagcttccaaatcaataataacatagatctcattatagagtcaaattcatgctccagtgatgtgtttagggctagcaacagtgattcagccatctttcactcagatgcatacaagcaggatagatggttagatgataatggctataacagggaagttatagattccttgaggatatctgatgcaccagaagcagattttgttgatggaaccaaatccaacagtgtggttgccagcaaagatcgagtctctgaatggctttggacactgcaccgaattggtatgctctattttttcttcacttcatcatgcaattacagtggtatcttgtgattatgttctaatttgcaaaacctattacagtggttgatgtggttagaacggatagtcatcttgatttctatggagaatcaagaaatatggctaggatgtcagatatacttgcagtttatgcatgggttgatccttccaccgggtattgccaaggtatatgcatatttcagtggcatctttttttacttcctttttggtttcttgatgtgtctaaatgggataagttgctaacaggtatgagtgatctactttcaccttttgttgttctctatgaggatgatgcagatgccttttggtgctttgagatgctactgagaaggatggtaattcacatatatttcaaattttgttgcctattagtttggtttctatgttactccatgcataatatgtgccctgttccacttcagcgtgaaaatttccagatggagggaccaacaggagttatgaagcagttgcaagcattgtggaagatcatggaaataactgatgtagaattatttgaacatttgtcaacaattggtgctgaaagccttcattttgctttccggatgctgctagtgctttttcgtcgagagctgtcctttgaggagtcacttagcatgtgggaggtgtggcatttgaagacacatgtattatcttttttcagttgttgttcttcgtaggaaagctctaatggatgtttgtttgtcagctggtgtaggtctaggggatgttggttaagccttttttatttcaaaaattgtattactagttaaatatttcaaatagtaaaatagggtacatcttcgatttaggttcaaaatcatcagaggtgtaggtagatggttcattacgattgtagttaatgtttgtgatatcatgtggcatgtgaactttatactccctcgggtcacaaatatttgacgtttaggacaagatgtggtcaaacttttaaaattttgaccgtcaataacagctcaaatgcgtagcttataaaaacacaaaaaaagatatgcggagatttgccttgcaaggtattagtgtcataatatgatacacttattagattttatagtcttattctgatataaaattgatggtcagtttcaaaagttttgaccaaatcttgttctaaacatcaaatatttatgatcggagggaacattacttataaaatgctcttcacactgcagtcttgatctgttaaccaaccgtgcttcttgctttcagatgatgtgggctgctgactttaatgaagatgtgattttacatttggaagagaattgtctggagccattgctggtagatatgaggaatgatttatcatgtgaggtgaaagaagagcaccgggtgaacagttacacaagaagaaagtccaaaagcaggaagccccatcatagaaatggtgaaatgcgtgtagcttgcaaccttggaatgaaacccaatacaagaaatcccctctgtggcttgtcaggagctactatttgggcaagacatcagcagatgccacatataagcacaaatgtgttagcaaagaatggagatgatgatctgcctatattctgcgtagcagcaatccttgtaatcaatcgccacaagataattagagaaactcgctcaatagatgatgcaatcaaggcaagtttaagtcacaacttcctttcatattgtttacaaacctcggatccatgaaattactaccaagagttacctatatttgcattagattttgtggaattcattttaggcaaaattaaaaatttgctcagacagtacaataacatgttatggccgatcatttctgcataaatgactattgattttgtcctctgctgaattgatgggtttaattagaggatgcttatttcattctgataactatcaatatttacaagttacggcaactgctaattaaaaatgatgcccagcctttctccctcttggaaaaaaagatgggtaaacctgtatatagtggtgatattgactctgctgagcagtcttccacttaaatgggaagagttaaggaaagtatagtcaggtttacttataatgcaacttattggcatattaatgcatgtttattgtttgcactcctgaagttgagttggtcaattttttccatagatgttcaatgataatatgctgaagatcaatgtaaaaagatgcgtacgcatggctatcaagctgaggaagaagtatatttacaaggtaaattgtgataagcatacatgagcaccatccatgtttttcaggtatatttacaaggtaagttctaatttggtcttgggatacagttattgaaggggggctcggaatgatgaaaaagtggaaactgaagttgagaaatcgccctggggaactagatgtttttcaaccatgaacttctcgtaattatgggtgatggaactttatatattcattagaagtccaaaaaaaatccgtatactcacggtatggattccctctttctgtttatgttttgttagagatggatgacgtacataatctgcttgtcttgtttcagggaatctgtacatatgcacagtatacttgaaaacaagagacgaagcggtggaaggataatagagaagaccgccatgttggtgtagcatcgatcgatgttgtcattgtttttgtggtgccagcccatctgccttggcactttccgtggtgatttctgataaaagtggagtactagttgttttttctttttgccaaacaatttgcgtcagctattggtggagagagaaggaatgaatgaggaatgtgtat</dnaseqindica> 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