Os04g0675500

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Revision as of 11:34, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0675500| Description = Similar to Itm1 protein| Version = NM_001060783.1 GI:115461295 GeneID:4337389| Length = 4424 bp| Definition = Oryza...")
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Gene Name

Os04g0675500

Description

Similar to Itm1 protein

Version

NM_001060783.1 GI:115461295 GeneID:4337389

Length

4424 bp

Definition

Oryza sativa Japonica Group Os04g0675500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:34891946..34896369

Sequence Coding Region

34892463..34892592,34892810..34892869,34892986..34893108,34893239..34893693,34894076..34894609
,34895371..34896234

Expression

GEO Profiles:Os04g0675500

Genome Context

<gbrowseImage1> name=NC_008397:34891946..34896369 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:34891946..34896369 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgccgccaccgcgctggactcgctgccggcgccgctccggtcgctgcggctgaagacgaagcagcaggagctcctgctccgggtctcggcgctggcgctcatctacgtgctcgcgttcgtcgtccgcctcttctccgtgctccgctacgagtccatgatccacgagttcgatccctacttcaactaccgcaccacgctcttcctctccgaccatggattcagcgagttctggaactggttcgatttcgagagctggtacccgctcggccgcgtcgtcggcggcaccctcttcccgggcctcatggtcaccgccgcgctgctccaccgcctcctccgcgcgctctccctcgccgtccacatccgcgaggtctgcgtcctcaccgcccccttcttcgccgccaacaccacgctcgtcgcctacgccttcggccgcgagatctgggactccggcgcgggcctcgtcgccgccgcgctcatcgccgtctgccccggctacatctcccgctccgtcgcgggctcctacgacaacgagggcgtcgccatcttcgcgctgctgctcaccttctacctcttcgtgcgcgccgtcaacacgggatctctcgcatggtcgctcgcctcggcgttcggctacttctacatggtctccgcgtggggaggctatgtcttcatcatcaatctgttgccgctgtacgtgctcgtgctgctcgtcacggggaggtactcgcagaggctctacgtggcctacaattccacgtatgtgcttggaatgctacttgcgatgcagatccggttcgttgggttccaacacgtccagtctggggagcacatggccgctatgggagtattcttccttttgcaggttttctttttcttggactgggtgaagtacctgctgaatgatgccaaactattcaagtcattcctgagaatcaccctgacatgtgtgataactgttggcaccctagctcttggaattggtaccgcgtcaggttacatctccccttggacagggcggttttactccctgcttgatccaacctatgcaaaggaccatataccaatcattgcatcagtatctgagcatcaaccaacagcgtggtcttcgttcatgtttgatttccacatccttcttttcctgttcccagcaggcctctacttctgtttcaagcgcttgtcagatgccacaatatttatagttatgtatggcctcacgagtatgtactttgctggtgtgatggttcggttaattcttgttgcagcgccagctgtttgccttattagtgccattgcagcatcagctacaataaaaaatctgactaccttgattcggacaaaaagcaaaagtccacaaactgtctctggaaaatcatctggctcaaaggcagctgcaaagggtgcagttgatcaatccttgcctttccagcagaatgtggccattgctttacttctgggtgctttctacttgcttagtagatatgctgtacactgcacttgggtgacatctgaagcttactcttctccttccattgttctggccgcaaggggtcataatggaggcagggtcatatttgatgattatcgtgaagcgtattattggcttcgtcagaacactccttctgatgcaaagattatgtcatggtgggattatggataccaaatcacagctatggggaacagaactgttattgttgataacaacacatggaataatacacatatagctacagttgggcgtgcaatgtcatcctatgaagatgaagcgtatgagataatgcagtcactggatgtgaattatgtgcttgtcgtatttggtggtgttactggttattcttcagatgacattaacaagttcttatggatggtgcgcattggtggtggagtttttcctgtaatcaaagagcctgattaccttgttaatggggagtatcgtgtcgacaagggggcagcaccaaaaatgttgaattgcttaatgtacaagctttgttattaccgttttggagaactgaccacagaatatggaaaacctccaggatacgatcgagtacgaggagtggagattggcaacaaagacattaagcttgagtacttggaggaggcattcacaacttcgaactggatagtgcgcatatacaaggtcaaacccccgaagaataggtcttga</cdnaseq>

Protein Sequence

<aaseq>MAAATALDSLPAPLRSLRLKTKQQELLLRVSALALIYVLAFVVR LFSVLRYESMIHEFDPYFNYRTTLFLSDHGFSEFWNWFDFESWYPLGRVVGGTLFPGL MVTAALLHRLLRALSLAVHIREVCVLTAPFFAANTTLVAYAFGREIWDSGAGLVAAAL IAVCPGYISRSVAGSYDNEGVAIFALLLTFYLFVRAVNTGSLAWSLASAFGYFYMVSA WGGYVFIINLLPLYVLVLLVTGRYSQRLYVAYNSTYVLGMLLAMQIRFVGFQHVQSGE HMAAMGVFFLLQVFFFLDWVKYLLNDAKLFKSFLRITLTCVITVGTLALGIGTASGYI SPWTGRFYSLLDPTYAKDHIPIIASVSEHQPTAWSSFMFDFHILLFLFPAGLYFCFKR LSDATIFIVMYGLTSMYFAGVMVRLILVAAPAVCLISAIAASATIKNLTTLIRTKSKS PQTVSGKSSGSKAAAKGAVDQSLPFQQNVAIALLLGAFYLLSRYAVHCTWVTSEAYSS PSIVLAARGHNGGRVIFDDYREAYYWLRQNTPSDAKIMSWWDYGYQITAMGNRTVIVD NNTWNNTHIATVGRAMSSYEDEAYEIMQSLDVNYVLVVFGGVTGYSSDDINKFLWMVR IGGGVFPVIKEPDYLVNGEYRVDKGAAPKMLNCLMYKLCYYRFGELTTEYGKPPGYDR VRGVEIGNKDIKLEYLEEAFTTSNWIVRIYKVKPPKNRS</aaseq>

Gene Sequence

<dnaseqindica>3778..3907#3501..3560#3262..3384#2677..3131#1761..2294#136..999#ctcctcctcgatctcccagatccaaaccgaacccaaccaagcggccgcggcgctctaaaacctctcccgctccacgcgcggggcgcatgaaaccctagcgagaggcgccagatctcccgcatccggatcgccgccatggccgccgccaccgcgctggactcgctgccggcgccgctccggtcgctgcggctgaagacgaagcagcaggagctcctgctccgggtctcggcgctggcgctcatctacgtgctcgcgttcgtcgtccgcctcttctccgtgctccgctacgagtccatgatccacgagttcgatccctacttcaactaccgcaccacgctcttcctctccgaccatggattcagcgagttctggaactggttcgatttcgagagctggtacccgctcggccgcgtcgtcggcggcaccctcttcccgggcctcatggtcaccgccgcgctgctccaccgcctcctccgcgcgctctccctcgccgtccacatccgcgaggtctgcgtcctcaccgcccccttcttcgccgccaacaccacgctcgtcgcctacgccttcggccgcgagatctgggactccggcgcgggcctcgtcgccgccgcgctcatcgccgtctgccccggctacatctcccgctccgtcgcgggctcctacgacaacgagggcgtcgccatcttcgcgctgctgctcaccttctacctcttcgtgcgcgccgtcaacacgggatctctcgcatggtcgctcgcctcggcgttcggctacttctacatggtctccgcgtggggaggctatgtcttcatcatcaatctgttgccgctgtacgtgctcgtgctgctcgtcacggggaggtactcgcagaggctctacgtggcctacaattccacgtatgtgcttggaatgctacttgcgatgcagatccggttcgttgggttccaacacgtccagtctggggagcacatggccgctatgggagtattcttccttttgcaggtatttcttacacatattgttatgaaatgatgtaacaattcatccgtagcgatgaaagtgccttctaagattagtagctagttacagctctggtttattagatggctagtttagtaaattagcaacagttgacataaaaaggtatgattcagatgaaaagtcccgccactttaggaaatttgcaccacccgtcttaattgtcctggaaatgagttaggattatttgtaactgagaaagggcgaaacacttaattgaaggcaacccgatcttggtttgtaggcaaactatggagtaaattggacaggtaattttgtagaacagttaagatcaaatgacctgttagtacttattgttagtttcatataacccagatgattagatggaacattggcatttgtgtcagattgctgctactctcattttgcctcttcagatagatcatgtttactgggtagacatgttatggaactgtgaattcttgtatgtttgcagtgtgattggtggcccatttatgcctggctgtaaaatgtgagatgctatactctttactcttgaatatgtcccacagccaacataactcaatgtcgttattgtgtttgttgtgtgtatatatcaaacatagcgtacctttgttatttgttaatatgaatgctttgacaaatatctattctattatgaggtactttgtgtactttgtatagatagagcagtatagcacatgtataagagagctatcataaaccatttcctctttttgcaggttttctttttcttggactgggtgaagtacctgctgaatgatgccaaactattcaagtcattcctgagaatcaccctgacatgtgtgataactgttggcaccctagctcttggaattggtaccgcgtcaggttacatctccccttggacagggcggttttactccctgcttgatccaacctatgcaaaggaccatataccaatcattgcatcagtatctgagcatcaaccaacagcgtggtcttcgttcatgtttgatttccacatccttcttttcctgttcccagcaggcctctacttctgtttcaagcgcttgtcagatgccacaatatttatagttatgtatggcctcacgagtatgtactttgctggtgtgatggttcggttaattcttgttgcagcgccagctgtttgccttattagtgccattgcagcatcagctacaataaaaaatctgactaccttgattcggacaaaaagcaaaagtccacaaactgtctctggaaaatcatctggctcaaaggcagctgcaaaggtattcccttttttttttttgtctatgcttgcttgcatgctttatattttgtatatggatagttgaaataaataaatttgatggagcttgaaatctgaaacatacttagataaaatcaagtggtacaattgaaatcctttgtttccgccaatcaataccctccagagtattgtgccatttgaaatgctggattgcaattttccagtttaccatgtgcatggctgataagaatataaaggatttgcgccttttctctgacaattctaattccagtaggttcaattgcacataattttgtggttttcagtttgcttgtatcaattattttaagtttctggttttcacatcactcagaagctgacttggtttcttgtgtaaacagggtgcagttgatcaatccttgcctttccagcagaatgtggccattgctttacttctgggtgctttctacttgcttagtagatatgctgtacactgcacttgggtgacatctgaagcttactcttctccttccattgttctggccgcaaggggtcataatggaggcagggtcatatttgatgattatcgtgaagcgtattattggcttcgtcagaacactccttctgatgcaaagattatgtcatggtgggattatggataccaaatcacagctatggggaacagaactgttattgttgataacaacacatggaataatacacatatagctacagttgggcgtgcaatgtcatcctatgaagatgaagcgtatgagataatgcagtcactggatgtgaattatgtgcttgtcgtatttggtggtgttactggttattcttcagatgacattaacaagtaagtttatccactgaatctagagcaaattttaataaatcgatgttattggttttattcgaattagtattgaacattttttcaaaaactgaactacaaaatggattcttacttagctgcttatttccaggttcttatggatggtgcgcattggtggtggagtttttcctgtaatcaaagagcctgattaccttgttaatggggagtatcgtgtcgacaagggggcagcaccaaaaatgttgaattgcttaatgtaagtatgaaacacactaatgagacttatttgtcaacacatgtactattttgttatttatccgtgttacttctatccttccatcacctctaattgtttcctctcttgtttgacaggtacaagctttgttattaccgttttggagaactgaccacagaatatggaaaacctccagggtatggcacatccttgccattgttattgcttttacttcattgatttatttaaatagatattacattgtactctgtattatattttggttatgaatggtttccctaataagccaggcaccataatttgctggttgtagcttgcattgtcctatttgtataacaagcctgtttttgatatggtaatggatgctagctctgctatttattttgtatgtagatacgatcgagtacgaggagtggagattggcaacaaagacattaagcttgagtacttggaggaggcattcacaacttcgaactggatagtgcgcatatacaaggtcaaacccccgaagaataggtcttgaggagaggaatcatctcttggttagtatctggtgctattaccttgaggtacattgtgtcaagtcaaaacgtattggagttcctacaggagacgggcaattgatttgaaaatctgcatcagctgcccccaagtgcgatcttttgttttggtgagactgacggaagtagaccataggtcagtttgaagtaacgatcatccgtcttcccctatatcattttgttagatgtaatcaggtgccattcagaactagcaattgcgacgaccgagtactttttgattgctgagcatggtatgacagtactccagatgtttttgtaagcacaacagcttatttgcgtagtaactttagatcgggttacacgggacacttgcaattttctggtgttgaagacaacaatgaataacttaactgtggttgctctgttttcctctgtgagctctcatcatcttgtggcaatcgcagtagtcgtttttatgttaataaatgatgcctataaacttgcatcatctcattagtt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0675500, RefSeq:Os04g0675500