Os04g0681600

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Revision as of 11:35, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0681600| Description = Protein of unknown function DUF580 family protein| Version = NM_001060826.1 GI:115461381 GeneID:4337433| Length = 88...")
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Gene Name

Os04g0681600

Description

Protein of unknown function DUF580 family protein

Version

NM_001060826.1 GI:115461381 GeneID:4337433

Length

8879 bp

Definition

Oryza sativa Japonica Group Os04g0681600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:35191713..35200591

Sequence Coding Region

35191937..35192128,35192236..35192463,35192633..35192893,35192987..35193343,35193532..35193645
,35193719..35193792,35193905..35194088,35194414..35194559,35194680..35195038
,35200298..35200518

Expression

GEO Profiles:Os04g0681600

Genome Context

<gbrowseImage1> name=NC_008397:35191713..35200591 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:35191713..35200591 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggagggccgctcggcgccatcataggcaggcacccggcggcggcgggcggcggcggggaggatgagctgggaggtggcggcggcggcggagatggaggcggcatcattcggcacaaccggcggtgccgggatttggccttcctggtgctcttcgcggccttctgggtcgccatgatcgtcaactctagcttcggattcaaccagggcaatccactcaggcttacctatgaactagactacaaagggaacatttgtggcagtaggcatggtgacccggatttgcatgagcttgatgttagatattggatgaacccaaaccaggtgtaccaaagtggggtcaaggacaacaagattaaccttgctgatgccaaagccatctgcctgatggagtgccccattccagcagcagacggattaaactttgtttgtgattatccagaaggggacattcgcctctctatcgatgattggatcaacagggactatgattattttgagtttctcgcaccagatatgagaaatagttctcttcagctgcagggtccatgctaccctgtcatatttccaagtgtgaatgtctactggagctgccaatttattgcgcgagcatccaatgtctctttgaagcattggcagcagatgggtggtatcaacatcgacgaaaatattctcatagataaaacaatacacaaggccatcaattctaaatcttcagtcttgaagagatacgttgctgacattgggaagtcatggcctgtgttaattgtttgcggtggactgctccctcttttcttgtcagttatctggttgcttctgattcgttattttgttgctgccatgccatggataactgtagtgctcttcaatgctctagtaatctccgttactatgtttttttatattaaagctggctggttaggcaatgatcccttgacagttgtaattggtgaaagtgatccatatgtgcatataactggacgggaaataagccaccttcatgctgctacggtggtgatgacagttgtaatgatcattgcatttctgtcctccatagctattatccggcgtatactgatagcaacacctgtcctgaaggttgctgcgaaggtcattggtgaagttcaggcactaattattttcccagttgtgccatactttatcttcgctatcttttatatgttctggttttctgccacactccatctcttcagctctggtcaagttctccgaaatgactgcaatacagattgttgctcatatgatctgaagttgggcaaagtaaactgtgacaactgctgtgggtacagcatccattacacccctcatattggtattgccattcttttccacttatttggctgttactgggcaacccaattctttattgcgtgctcttcaaccgtgattgctggatcagttgcttcatactattgggcacgtggtgaaatatcccatgacataccatttgttacagttgtttcttcattgaagcggttgttgcgttacagccttggttcagttgctataggttcacttgttgtatctgctgttgagtgggtgcggtttatactagaatgcctcagacgcaagttgaagctatttgattccgctcgtgaaagctgctttggtaaaatgacatcatcctcttctcaatgctgcctgggctgcatagactggaccctcaagtctgtgaatcgaaatgcctatataatgatagccattactgggaaagggttcttcaaagcttctgttctcgcaactggtttgatcatgaataacatactgcgcattggaaaagttaacgtcattggagacgtcatcctctttctggggaagctctgtgtgagcttgttctgtgcgctctttgccttccttatgttagacactcacaagtacaagtctgcacataacaagatatcatctcctcttgttcctgtagtggtatcatgggcacttggttttatagtcgccaagcttttcttccaagtcgtcgagatgtcgatcgacaccataatcctctccttctgtcaagattcagaagagcaccaagggaacgcgcagtacgctccccctctcctagtggagacactggatgaacagagtgaactccatagactaactcaagggccttga</cdnaseq>

Protein Sequence

<aaseq>MGGPLGAIIGRHPAAAGGGGEDELGGGGGGGDGGGIIRHNRRCR DLAFLVLFAAFWVAMIVNSSFGFNQGNPLRLTYELDYKGNICGSRHGDPDLHELDVRY WMNPNQVYQSGVKDNKINLADAKAICLMECPIPAADGLNFVCDYPEGDIRLSIDDWIN RDYDYFEFLAPDMRNSSLQLQGPCYPVIFPSVNVYWSCQFIARASNVSLKHWQQMGGI NIDENILIDKTIHKAINSKSSVLKRYVADIGKSWPVLIVCGGLLPLFLSVIWLLLIRY FVAAMPWITVVLFNALVISVTMFFYIKAGWLGNDPLTVVIGESDPYVHITGREISHLH AATVVMTVVMIIAFLSSIAIIRRILIATPVLKVAAKVIGEVQALIIFPVVPYFIFAIF YMFWFSATLHLFSSGQVLRNDCNTDCCSYDLKLGKVNCDNCCGYSIHYTPHIGIAILF HLFGCYWATQFFIACSSTVIAGSVASYYWARGEISHDIPFVTVVSSLKRLLRYSLGSV AIGSLVVSAVEWVRFILECLRRKLKLFDSARESCFGKMTSSSSQCCLGCIDWTLKSVN RNAYIMIAITGKGFFKASVLATGLIMNNILRIGKVNVIGDVILFLGKLCVSLFCALFA FLMLDTHKYKSAHNKISSPLVPVVVSWALGFIVAKLFFQVVEMSIDTIILSFCQDSEE HQGNAQYAPPLLVETLDEQSELHRLTQGP</aaseq>

Gene Sequence

<dnaseqindica>8464..8655#8129..8356#7699..7959#7249..7605#6947..7060#6800..6873#6504..6687#6033..6178#5554..5912#74..294#aagctacagatcgctcgctgtctcgctcaagcgcgacctaccacagcatcggatcgaagcgagcggcggcggaatgggagggccgctcggcgccatcataggcaggcacccggcggcggcgggcggcggcggggaggatgagctgggaggtggcggcggcggcggagatggaggcggcatcattcggcacaaccggcggtgccgggatttggccttcctggtgctcttcgcggccttctgggtcgccatgatcgtcaactctagcttcggattcaaccagggcaatccactcaggtgaggtgacccgcctttacccctcctctcctcaagattcgccgatctgtgctgtcggtgctgcttgatttcggtttcctgtagctagatgctaagagcgttcatccggggagcttttcctttgctgggtggtgattagtgccgctgtacattttgagctgttctttagacagcaataattaccaagaacggagctatttcaggtgtttagtgcataccttcacattcttgttggctcattcttcttcaccttgacgtgttactttcagactttcagtctaattgaactgacatagagagagaaaatgagggtgccagttgctagtatggaacattcttgaggtcattaaagactttagtaacagatcttgcttatttcggaatgaaacttctagctcccggctttgttatgtgtactgtgaatcgaataatcttttcttgctttgtgtcaacctcccaacaggataggtaaagaagcccacttttgctttgcagggagaaaatgtgcctttagtggttactcctatgggcgacgctccggtgctttctacttgtagtatatactacaactagaaataatccaaaccgttgatttccaagggcatattagtactttgttagtactacgattaggggtaaacttggtattaggaaaatattcgtgatttttattacgtttcaatcttgtatcgcatcgatccttcgctgactttagcactattgccgttgttgccctattccggtagatctcagccagcgttcatcactgtcgcaacgctctgcttcgctaatgtctgcaggcaatttgtttggtaaatttctcacatggtaaatccttctggtattttggtgtgactccttgatggtattttcgtgaacgaaaatcttctagacttttttctaaaaaccatctggcgttagcaacactcaaaacattaccattatcctgttcaaaattggaccgtgtgtagtacactaccgataggtgattggggtgacatcgtccaatctcagaaagagctgcttttttactgatcaactgttttgtggaaccattgacatttacacatgcacacagagcaacagtatagatagcacttgcactcattcaccgaacatgacgtcacaagggcaccagaacatgtaagcatagttgagatcagataaaaacttgatttctaaaactatacaattcaaggtcctaggttttcctatgtgcaaaattacaaccttatcccagtttcgagccaacatcaaagaagtcagagaggcattggaccaataaacatgtaagcacagttgaggtcacataaaaacatgacttttaaaatactccttgagcctcgcattggcatctggttattctcctttcttctctagtctctgataagatcagaaacagcttcgagcctccctcaagaaactaaacaaataggagtgcttcacagcactaattgtaagataagatagaaaatattatgagcaactaatgttagtcaggccacagataaattagtagctgtttacccgaaagttgatccggagatgtgttgcagaggcatcggagttataggatatcatcctgtatccaatctattatattattaaaacagccttgaaaggaggcaccacgttcgttgtgggggctagaaattctcacattaatcaaagaaaaagaaaagaaaagtccaagtagaaatacaatttaaaaatagctgaaattcggaattaaaaataagcaatattaaaagaatagtccatataagaacccaatacgagattaatcaaaattcagaataaaaataaaataaaatccaaaattagaaaagaaaaggagagtccaagtaggaatacaatttaaaaataactgaaattcggaattgaaaataagaaatattgagagaatagtccatataagaaccaaacacgagattaattaatattcgtaataaaaataaaaataaaatctgaaattagcaaaaagaaaagaagagtagaaatacaatttaaaattaaccgaaattcagaattaaaaataagcaatattggaagaaaaatccatataaaaacccaatacgagattaattaaaattcagaataaaaataaaataatatcaaaaattataaaaactaaaagagagttcaaataggaatataattttgaaacaacttaaattcaaaaaaaaaatattaaaattacactatatgatattaattaaaatttgaaaaaaaataaattctgaaattagaaaaataaaaaagatttcaattaggaataaaatttgtaaataactaaaattggtgataaaaagaaagactattgaaagaaaagaccgtctaaaacacatgacgagataaattaaataaaaatttgaaaaaaaatataaattctgaaattataaaaagaaaaaaagatttcaattaggaatacaatttgtaaataactaaaaatgatgatataaaataaaaactattgaaagaaaagaccgtctaaaacacctgaagagataaattaagtaacatgcctataaaggagtacattggtggacggttaatacgacatataaaaactgttaataaaacaccaaatagaatcctaatgacgattaaaaggagggacgacaggcaagccgtgaagcaaacaggcaaggcggttgccgggacaaaaaaaataaaccccattgataatcatattcgatttttaaaatctcaatgtcaataaaaaggagaagcagcgggcggggtgcataggagtagagttgcagagccgccgacggttggcgggacttctagaaaataaaaaatgaattccaacgatagttatgctcgatttttagaatcccaatgacaataaagagtaggcgacagatgggtcgtagaggagtatagtggcatcgtttgactggacttctaaaaattataaaaaataaaacctaacaagacaataaactctaaaatctacaaggttcaatttttaaaggttcggaacttctaaaaagtaaaaaaaaaacccaatgacaataaagaagggaggcaacgggtgagccattaaggagtacagtggcaaagccgctaatggtttggtgggacttctagaaagtaaaaaattgaacccgaacgatagctatgttcgattttgaaaatcccaatgataataaagagaaaagacagtgcacgggctgtagagaagtataatggcagtgtttgacggaacttctagaaattataaaaacgaaacccaacgagacaataaactctaaaaactataagatctaatttttaaaggtttcaaggagaatgaatagaaatagcggtagatcgagcaagcaaataaaaaaggatatgacagaagtaaggagtagcagctggtgtgacttttaaaaactatataattagaaatacggggatgatagctatttagtttagtctttcaaagtcttaagacaacgagatagctatttaataaattttaagtaaaattatactaaaaaatatacgattttgtttgggtgctagccgcgcaattgcgcgggccacccagctagtttcaataataacatgagtaaactcaactccaaacaacatgcacggtgcaggaaatggatgccaaataagaggcaacaatgctgtgaggcttgccagcaacacgagggagtggacttcatcagggtactcaacagaacacatttgttagctgtaatggaattactataaatttttcaatatactagttcacaattcagttgtgagttgtaggatactagtattttctggtagcatacaaacatgcacagttgttgcctcctcctttatgcattgtactattgtagttcttttaaagcctcaagatttctgtcatgcattatccaaatatatgtactgaacctactactaacagcctgaacgaattattttcgtttttcaaggtctttttcccgaagagaaaacagctgatcagtacattactaaccaatgctaaattgatagttccgtaaaagaacaagcattcatctaatcagtcatacaaaacccgactacagaattcagtttttacattcaactacaccattcgaatagagcaatcaaagatcagtaactgatctgcatgggagtaaatggaaggacaggacgttacctcttatgtgatggatgagcactgcatttgtgatcgatgatcacagtttcatacataagagactggatttttaatgaacagtaggtacagaaggtagcatcactgttatgttctggtagaagaacacacctcataacagatggaacagttgttcttcatggagttctcgatgctgcagtgcttgtcgttgcgcaggctgaccgagtagcatgatacagtgtgtcaacagataaaagtggaatcgagagattcatatcaaaccttctcactagcaaatagtaatagcttgggatttcagtaccgactaccgagagatgtaggggtatactcaccacgtcgccaagcccgcgctatcggtaggctgaggcgtcggaggaggtgagggcggcagaagaggcgagggaggcggaggccgtaagccggtgagggcggaggaatcgtcgagggcgg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External Link(s)

NCBI Gene:Os04g0681600, RefSeq:Os04g0681600