Os04g0682800

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Revision as of 11:35, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0682800| Description = Sodium/hydrogen exchanger family protein| Version = NM_001060834.1 GI:115461397 GeneID:4337441| Length = 9160 bp| D...")
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Gene Name

Os04g0682800

Description

Sodium/hydrogen exchanger family protein

Version

NM_001060834.1 GI:115461397 GeneID:4337441

Length

9160 bp

Definition

Oryza sativa Japonica Group Os04g0682800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:35260296..35269455

Sequence Coding Region

35260750..35260872,35261058..35261132,35261229..35261285,35261905..35262081,35262155..35262221
,35262772..35262830,35262917..35262970,35263184..35263333,35263438..35263647
,35264128..35264256,35264345..35264449,35264664..35264753,35265359..35265424
,35265776..35265844,35266077..35266196,35266273..35266332,35266410..35266546
,35266799..35266889,35267027..35267192,35267429..35268888

Expression

GEO Profiles:Os04g0682800

Genome Context

<gbrowseImage1> name=NC_008397:35260296..35269455 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:35260296..35269455 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatttgtctaggtttactgccccgcggccgggcttgcagatcggcgccgccgggaatggcttccgggcatgctccctgcggcgtctcaggtatcgtgtctgcggcgggaaccccatgggcgcctccgccctcggaggctgcggttcccgtagcctcttctacttggctccaaaccatgggagccctcttgccctccggaccagagggagggcgctgaggtgccagggaaatgactcactggcctatgttgatggccctttggaaggtaccaatggctcagtagtcgataataccgaggacgaagcaaacagctctgggttggatgaggagaagggtgatgatgatgcagaaaatctcagggacttgcttcagaaggcgaggaaagagctggaggtggccaggttgaacagcaccatgttcgaggagaaggcgcagcggatatccgagtcggccatcgcactgaaggatagggcagataaagctcagagcgacgtctcttctgccgtgacgaccatacaggagatcatcagcaaggaggctgatgccaaggaggctgtccggacagctacaatggcgctctccatggctgaggcccgcttgcagttggcgtcagaagctctggatgccaaaaggggatcagtcgggccgatggaagttagcattgatgatgtggaggaggaggcccttgcgtccgcgcaagaggagattaaggagtgccaagaaagtctgtcaaaatgtgaggaggagctgagacgtatccaagagaagaaaatggagttgcagaaggaggttgatagattgacggagcttgctgagagggctcttttggatgcttcaaaagctgaggaggatgttgcaaatataatggttttggctgaacaggcagtagctcttgagatggaagctgcacagcgagcaaatgatgcggaactagcattgcagaaagcggagaaggccatctcctcggttgatgccgtcgtagagttaccagcacctgctgaggagcaagtaagtgatgaagaagacaatgtttctgaagtgtatgattacagcagtgatgctatagatgatattcctgaaagagacgaggtgtcaaatgttgagcgcctaactgttggggacttagctgtagaaggcattgagcaacttgaatcatcccgtgaaatgtctgatgacgaaagcactgacaagttgcttgttgagcctcagaaagaagccgaacctgatatagataagtcaaagcaagggaaaaaacaggaaatagaacgaaaggagtctcagccatcgaatgctcctaaagcatcactgaagagatcatctcggttcttccccgcatctttcttctcctccaaagcggatggagaatttacacctacatctgttttcaaggggttgatgaaatcgactagaaagcatgcgccaaagcttgttgttgggatagtgcttcttggagcaggagcattcttcttaaatcgggctgagaagagtagtcaattatttcagcagcaagaaataaccacaagtattgaggaagttacctccactgcaaagcccatagttcgtgagatgcgaaagatcccacaacgagtaaaaaagcttattgagctcttacctcatcaagaggtaaatgaggaagaagcttcactcttcgacatattatatttgcttctggctagtgttgtgtttgtaccattatttcagaaaatacctggaggtagtcctgttcttggatatctggctgctggtgtcctaatcggtccctatgggctttccatcatccgtcatgtccatggaacaaaagcaattgctgaatttggagttgttttcttgttgttcaacattggccttgagctttctgtggaaaggctaagctcaatgaagaagtatgtctttgggttaggctctgctcaggtgctggctactacagcagctgttggtatgatagctcaccgttttgcagtgctaccgggaccagcagcaattgttattgggagtgggttggctctgtcctcaacagctgttgttttgcaggtactacaagaacgtggggagagcacatcacgacatggacgtgctacattttctgtgttattattccaggatttggctgtggtggtcctgttgatattaatacctcttatatcacctaattcttcaaaaggaggggttggtttccaagcaatagcagaagctatgggaatggctgctgtaaaagcaatagctgctataacagccataatcgctggaggtcgtctgttgcttcgtccaatttacaagcaaattgctgaaaataggaacgctgagatattttcagcaaatactctccttgttatttttggaacaagtcttctcacagctcgggctggattgtcgatggcactgggagcatttttggctggtctattgctagcagaaacagaattctccttacaggttgagtcggatattgctccttaccgtggtcttctgttaggtcttttctttatgacggttggaatgtctattgaccccaagttgcttctgtcaaacttcccagcaatctctgtgatattaggtcttttgattattggaaagacaatgttggttacatttattggtagagtatttggaatttccaccatagctgctgttcgggttggtctgttgcttgcacctggtggggagtttgcttttgttgccttcggagaagctgtcaatcagggtcttctatctcctcaattatcgtcattattatttctagtggttggcatttcaatggctcttacaccatggttagctgctggtggccagtttttggcatcaaaatttgagcagcatgatgtgagaagtttattacctgtggaaagtgagacggatgacttgcaagaccatattataatattgggatttgggcgtgttgggcagataatcgcacaactcctgtcagaaagattaattccatttgttgcacttgatgttcgaagtgatcgggtggcagttggacgcgcgcttgacctaccagtatatttcggggatgcaggaagtagagaggtactgcacaaagttggggctgagagggcctgcgcagctgctattactttagatacccctggtgcaaattatagagctgtctgggctttgagcaaatattttccaaatgtgaagacattcgtccgagcgcatgatgtggatcatggtgttaacttggagaaagctggtgcaacagcggttgtccctgagaccttggaaccaagtctccagttggctgctgctgttcttgcacaggcaaaactcccaatgtcagagattgcagcaactgtcaatgagttcaggaaccgtcatctgtcagagctcacagagttatgtgctacaagtggaagttctctgggctacggatactcgagagtcatgtccatttccaaatcaaagaccgtcacctctgatgatgagagtgaaactgttgatggagcattggcgatttga</cdnaseq>

Protein Sequence

<aaseq>MDLSRFTAPRPGLQIGAAGNGFRACSLRRLRYRVCGGNPMGASA LGGCGSRSLFYLAPNHGSPLALRTRGRALRCQGNDSLAYVDGPLEGTNGSVVDNTEDE ANSSGLDEEKGDDDAENLRDLLQKARKELEVARLNSTMFEEKAQRISESAIALKDRAD KAQSDVSSAVTTIQEIISKEADAKEAVRTATMALSMAEARLQLASEALDAKRGSVGPM EVSIDDVEEEALASAQEEIKECQESLSKCEEELRRIQEKKMELQKEVDRLTELAERAL LDASKAEEDVANIMVLAEQAVALEMEAAQRANDAELALQKAEKAISSVDAVVELPAPA EEQVSDEEDNVSEVYDYSSDAIDDIPERDEVSNVERLTVGDLAVEGIEQLESSREMSD DESTDKLLVEPQKEAEPDIDKSKQGKKQEIERKESQPSNAPKASLKRSSRFFPASFFS SKADGEFTPTSVFKGLMKSTRKHAPKLVVGIVLLGAGAFFLNRAEKSSQLFQQQEITT SIEEVTSTAKPIVREMRKIPQRVKKLIELLPHQEVNEEEASLFDILYLLLASVVFVPL FQKIPGGSPVLGYLAAGVLIGPYGLSIIRHVHGTKAIAEFGVVFLLFNIGLELSVERL SSMKKYVFGLGSAQVLATTAAVGMIAHRFAVLPGPAAIVIGSGLALSSTAVVLQVLQE RGESTSRHGRATFSVLLFQDLAVVVLLILIPLISPNSSKGGVGFQAIAEAMGMAAVKA IAAITAIIAGGRLLLRPIYKQIAENRNAEIFSANTLLVIFGTSLLTARAGLSMALGAF LAGLLLAETEFSLQVESDIAPYRGLLLGLFFMTVGMSIDPKLLLSNFPAISVILGLLI IGKTMLVTFIGRVFGISTIAAVRVGLLLAPGGEFAFVAFGEAVNQGLLSPQLSSLLFL VVGISMALTPWLAAGGQFLASKFEQHDVRSLLPVESETDDLQDHIIILGFGRVGQIIA QLLSERLIPFVALDVRSDRVAVGRALDLPVYFGDAGSREVLHKVGAERACAAAITLDT PGANYRAVWALSKYFPNVKTFVRAHDVDHGVNLEKAGATAVVPETLEPSLQLAAAVLA QAKLPMSEIAATVNEFRNRHLSELTELCATSGSSLGYGYSRVMSISKSKTVTSDDESE TVDGALAI</aaseq>

Gene Sequence

<dnaseqindica>8584..8706#8324..8398#8171..8227#7375..7551#7235..7301#6626..6684#6486..6539#6123..6272#5809..6018#5200..5328#5007..5111#4703..4792#4032..4097#3612..3680#3260..3379#3124..3183#2910..3046#2567..2657#2264..2429#568..2027#gctctcctgccctgcctcgtctcctccgctcagctcagctccggtccaaaccaaaacacacacacaacataagaggcggcggccctaacaaatcccaagagacttccactgcacaaccaacctagagcagctttgagacttgagagtgagagctcgcgagtcgcgcacagactcaaacagaggcagagagagatgggaagggaatgaggcggcggctcctctccccttctccggtgacgtgacgacgcccctctcctcctcctccgctgccgcatccgagttcataaaccttcgtcccttccgccccgccatccgtcttcccggaatcccggtatgtaagccccgcccccgcttcatcagttcggtcggattggatgaacgcccattttttgtggggacgttcagcgtgatgtatcaacgattcaatcgaacagccattggttttttttctcccgtgtttctaatctaatgccgcttactttttttagccaaacattttgttggattcctccggggttctgatttgggtttctgttgatattgtgttcgtacagggggcgcgtggggatggatttgtctaggtttactgccccgcggccgggcttgcagatcggcgccgccgggaatggcttccgggcatgctccctgcggcgtctcaggtatcgtgtctgcggcgggaaccccatgggcgcctccgccctcggaggctgcggttcccgtagcctcttctacttggctccaaaccatgggagccctcttgccctccggaccagagggagggcgctgaggtgccagggaaatgactcactggcctatgttgatggccctttggaaggtaccaatggctcagtagtcgataataccgaggacgaagcaaacagctctgggttggatgaggagaagggtgatgatgatgcagaaaatctcagggacttgcttcagaaggcgaggaaagagctggaggtggccaggttgaacagcaccatgttcgaggagaaggcgcagcggatatccgagtcggccatcgcactgaaggatagggcagataaagctcagagcgacgtctcttctgccgtgacgaccatacaggagatcatcagcaaggaggctgatgccaaggaggctgtccggacagctacaatggcgctctccatggctgaggcccgcttgcagttggcgtcagaagctctggatgccaaaaggggatcagtcgggccgatggaagttagcattgatgatgtggaggaggaggcccttgcgtccgcgcaagaggagattaaggagtgccaagaaagtctgtcaaaatgtgaggaggagctgagacgtatccaagagaagaaaatggagttgcagaaggaggttgatagattgacggagcttgctgagagggctcttttggatgcttcaaaagctgaggaggatgttgcaaatataatggttttggctgaacaggcagtagctcttgagatggaagctgcacagcgagcaaatgatgcggaactagcattgcagaaagcggagaaggccatctcctcggttgatgccgtcgtagagttaccagcacctgctgaggagcaagtaagtgatgaagaagacaatgtttctgaagtgtatgattacagcagtgatgctatagatgatattcctgaaagagacgaggtgtcaaatgttgagcgcctaactgttggggacttagctgtagaaggcattgagcaacttgaatcatcccgtgaaatgtctgatgacgaaagcactgacaagttgcttgttgagcctcagaaagaagccgaacctgatatagataagtcaaagcaagggaaaaaacaggaaatagaacgaaaggagtctcagccatcgaatgctcctaaagcatcactgaagagatcatctcggttcttccccgcatctttcttctcctccaaagcggatggagaatttacacctacatctgttttcaaggggttgatgaaatcgactagaaagcatgcgccaaagcttgttgttgggatagtgcttcttggagcagggtgagttgcatagtgaataatatcttttctctttggtttctgtttgctagaaagtaagaaaattctgatttcccatatgtttgtatatttatgctggatactgttatagtttgtcatattttctatctgtataatcaaataactgaaagtacttgttcttacaacagttgaagtgatttcattaatgttgataagccaattctttatgaaacggtgtttctattctctgtctacagagcattcttcttaaatcgggctgagaagagtagtcaattatttcagcagcaagaaataaccacaagtattgaggaagttacctccactgcaaagcccatagttcgtgagatgcgaaagatcccacaacgagtaaaaaagcttattgagctcttacctcatcaagaggtatgttccctttcaactgaacctgtacattggcgaatttatttcccttttttgtgagtacattctcttgctgctcacacaagttagacaagaaatttggcttgtgtctaactcccttctgctctttgttaccctaggtaaatgaggaagaagcttcactcttcgacatattatatttgcttctggctagtgttgtgtttgtaccattatttcagaaaatacctggaggtgatacatttatttctgacatctatatgtgcatagcatggtatcatggcaatcaaactttccttatccatctgccttttttttacaaatcatatcaaacaaattcgtctctgttctactctagttttagtttcaagtttcaaccgaacactacaaagtacaaacattcactttgattttctaatttgaaatatctgaacgtttgttcactgtccgatatttctttttctaatatgcaccttgatatcataggtagtcctgttcttggatatctggctgctggtgtcctaatcggtccctatgggctttccatcatccgtcatgtccatggaacaaaagcaattgctgaatttggagttgttttcttgttgttcaacattggccttgaggtagaaactgagtttcttttagattctttccttaatcctcatgcaggatatatcagcttaccattttttacctgcagctttctgtggaaaggctaagctcaatgaagaagtatgtctttgggttaggctctgctcaggttatactcatgctatgcaaccagtaaagcaatagttccatgtggatactccctaacaaattggagcaattgacaggtgctggctactacagcagctgttggtatgatagctcaccgttttgcagtgctaccgggaccagcagcaattgttattgggagtgggttggctctgtcctcaacagctgttgttttgcaggtacttataactggcatttatcttgtgtcatagattctgacattttgatatttctcatagtcaccgtgatcatatcacaattggaataaattgatcacctggaaaccttttttttctctgcttcaaactttgataccagagtattgtggaaacttcctttctacatatatatttgtggtcttcatttttttagttacactgggtgttgagcacttatggtttgcttctctaggtactacaagaacgtggggagagcacatcacgacatggacgtgctacattttctgtgttattattccaggtatgaccaccatgatcatgaatattggtgattatgttccaagtttctcttcctccctttttttttcttctgatgcacttccttatgttttatcttgagttcttgatgacaccccaccctgtggttgcatttatttgaatgtcctttactgttccttgccatgcatgtatgcaagcatggacttagacatacactcatctgcaagcacatgcttatgcttagggtttattgtttcctcttcccatatctattgccatttacaggaaaaaaaatgcattgacctgactagtgttaatgtaatctaagtctttcttctgatagatatttgttgtgacatactgttgtatgcaggatttggctgtggtggtcctgttgatattaatacctcttatatcacctaattcttcaaaaggaggggtaaccttttttgatgccatgttctttttccctgtctgagttaggacatttttgcttgttggtgcaaaatgatcaacgtgtttactacaaatgattcttcgtgcatgaacaatcaagtactctacatcactcttgtaacagtcagtataatcatgacatgaactgatgagataatctagatgttttatcctatagcatgatcaattgaccaattaaaattgttaaatttcttgattggtgataaattttatgaatcactttaaaagccatgttccattgcattgccctttgtaggctatttaagccagatgatctatttattgttctaagtgctcattctatatttctgatgacataggttaaattgacagaaatataacataagtaactgttgtgtaagatcagctagtgttatatatgtttattgaaatgtatgcttgacacttggacacagccaaagacattaatttagcaagagttttaattgcaatatgaccatggttgcttctcgcagagtctttccataaccatgtggtgtcgcaatgttctctttttatctttttctttctgtttaaactttcttacacaatttctgcttcttataggttggtttccaagcaatagcagaagctatgggaatggctgctgtaaaagcaatagctgctataacagccataatcgctggaggtcgtctggtgagtcggctgttgtttcatttagttggcattcttatccgttgatgatttttgcattgactctaagtttgactgccagctaaacacgcacacctacatgcatgcatgtgtgccactgcacatttatagcccttgttgcctgtgtgctcattctgctctctagaatttgattataactgttcgatttgtaagttatcctttttatgttgaacagttgcttcgtccaatttacaagcaaattgctgaaaataggaacgctgagatattttcagcaaatactctccttgttatttttggaacaagtcttctcacagctcgggtatgtatatttttcttattatatcccagccttgcatagttgcattccttgaatctactttgcatgttgttttactctctcatttcaggctggattgtcgatggcactgggagcatttttggctggtctattgctagcagaaacagaattctccttacaggttgagtcggatattgctccttaccgtggtcttctgttaggtcttttctttatgacggtaaggactctgaatataatcatcattttttttgtctatgtcaatgagctgataggagtttgcttcaatgtttatatggataatataacaatgtacatatcgaatgcaacattacagacatcgaattatgttgatattatcttgctagttcattagttatgatgccaccgacatatgcaatgaataactttacacgcttgttcactatccaactgtttgacttcacatatttgtcaagttgttatgttttatttatttaaatttttaatggtcatgtattgtgtagaacagtattaatggttccagtgtcatatcacttatgtttctgtctttgattcttattttagatttttttttaggtccaacatcgtggtttctattatttactctggaatgacgataaatcgctaattcttcctgtaagctactatcttatttgaagcccttgcttaatgcttgcactgcatttgccctttccaggttggaatgtctattgaccccaagttgcttctgtcaaacttcccagcaatctctgtgatattaggtcttttgattattggaaagacaatgttggttacatttattggtagagtatttggaatttccaccatagctgctgttcgggttggtctgttgcttgcacctggtggggagtttgcttttgttgccttcggagaagctgtcaatcaggtttggccctggttctttctgtttttttgtattgttttaggtgataagatgtatatgtcacacacatctgagttaagacaaactcatggacaatatttttgcagggtcttctatctcctcaattatcgtcattattatttctagtggttggcatttcaatggctcttacaccatggttagctgctggtggccagtttttggcatcaaaatttgagcagcatgatgtgagaagtttattacctgtggaaagtgaggtatcttcttttcactctcatagaccaacccatgttttaccttctgtttcgatgacctttttttttttgctgcaatagaggacatttgcaaaaacttagtatttttcccagtttagtttgtaatgaactgtcaagttcacagattttaacaagaatgcataattccatgctatgttcaattcagctagtataatacaaattttgtccatgtagacggatgacttgcaagaccatattataatattgggatttgggcgtgttgggcaggtttgtaatcctcataagattttatctatctatctatctactttgctcgataaatttctactaatacgcctttcatatatttttagataatcgcacaactcctgtcagaaagattaattccatttgttgcacttgatgttcgaaggtatggtactgcatcttgcaataaccttgttaaaggcagctacaagataatattgaagcatatctcagcattactattggctatttatatgtataataatcctcgttctcaagcatgcatataagctgctatgtgttcaaacactttgttatgatttatgtctggctggtgatgcctacttgtggttagtggcatgcttgttagacagtgaacatgtagctggagataaattctagtagatccacaaaatattagaaaattcagttaagtgcatggaaactaaggaagtggtggcaaaacctgcaggaaacagatgttacactttccatttatcgttggttagttacattttggtagattgataaggctggtagcttccctctgaaacaaaagtgatgtcgtgtgtgatgctattgccgtaacatttggttgtcatctccatctgtcttgggctgccaagcctgccacatgtacttgttcaattagtcaatacctctggttaaacctattatcttcaactatttaattcttgggcacctttttcactcagtgatcgggtggcagttggacgcgcgcttgacctaccagtatatttcggggatgcaggaagtagagaggtagaacaagttcaactaaaaattctaccatacaacttgtcaaaaggtgctgatctcaatcgatttttgccaggtactgcacaaagttggggctgagagggcctgcgcagctgctattactttagatacccctggtgcaaattatagagctgtctgggctttgagcaaatattttccaaatgtgaagacattcgtccgagcgcatgatgtggatcatggtgttaacttggagaaagctggtgcaacagcggtaagtatgtgtaacaaagttgtgtgcaatgatttcagcagtgtctaggagtctaggtgatgacatactcctggtgcaacttgaatggacattactccatgtggttcagtgcaagtttttttttacacattttattttattggaaggaacttttaaaatccagtaacctgcctattaacatttgcggcaagtagtttttcacaaatatatgaattgaaatgtttattaaaaccttaaaccttgtggcagttagttttggaacctggtagtacacacccttagttgtacagtcatttgcatagaccattagaaaaaaaatcttttggtcactaatgaattaaatgttgaacatggaagggttttaggtgctcatttgccactcatgggattacccaagtatctggtcggtgcaattgtaatatttggtgtcatcatttggtaccgatggttcttctatacttgtgggctagccatttcgatatgatatataacctgccattgtgctgcactgctgcataagggcccattctttgtcttatgcatatccttttgttatatactgtattctatcaccgatttaataatactatctcctaatggaactacatctacttttaaggttgtccctgagaccttggaaccaagtctccagttggctgctgctgttcttgcacaggtaagcaatgctgttacagtattatactgttatgctctttcatcaagtgtggaatttaatgcacaaacatcaatttttcctattactgtatttcaggcaaaactcccaatgtcagagattgcagcaactgtcaatgagttcaggaaccgtcatctgtcagagctcacagaggtttgtgactgcattgcaacttagtgatcttagtcataaactcataatgatttcaataaaatccatagagctgtaaaattttcctatgtttattgaagaccttaatgaagtcctacgttggtctattggtggatgattttttattcaggttcaaatgctaactgctaagttcttttttctgacagttatgtgctacaagtggaagttctctgggctacggatactcgagagtcatgtccatttccaaatcaaagaccgtcacctctgatgatgagagtgaaactgttgatggagcattggcgatttgagctgatgcgttagtcacctcccttagactgtacagtagataatctgtcatcaaagataatttgcgtatagaaaagtagtagcaaaataattcacgcaatgacgattcccatttttgaaaacttagcattacccctttttttaatgtatggtaggacataggatattacttatcttctaccatcagttcatttatttgtagcccttttactccgttagcaagtaatttcttgatggagaactaggacgatgcttgcaccttacatggagaacactgagaatttcacaagtggcctccaaatggcgcatgatggataagtcgtagtcgtctcttatgaggaatccatacaaccaagattttgggttcagaactaaatattatgattttgttagtactcagagctgatgttggaaacaagtggtgtcgggtttcttttgatattgcattatattttt</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0682800, RefSeq:Os04g0682800