Os04g0683500

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Revision as of 11:35, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0683500| Description = Similar to Adenosine deaminase acting on tRNA 1| Version = NM_001060837.1 GI:115461403 GeneID:4337445| Length = 5828...")
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Gene Name

Os04g0683500

Description

Similar to Adenosine deaminase acting on tRNA 1

Version

NM_001060837.1 GI:115461403 GeneID:4337445

Length

5828 bp

Definition

Oryza sativa Japonica Group Os04g0683500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:35292832..35298659

Sequence Coding Region

35292868..35293300,35293429..35293503,35294114..35294212,35294465..35294637,35294719..35294799

Expression

GEO Profiles:Os04g0683500

Genome Context

<gbrowseImage1> name=NC_008397:35292832..35298659 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:35292832..35298659 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctcccctcctccgccgcctcctcgccgccggcgccgccgccgtcgccatgggacgacgtctcctgggcggaatccacctcctcgactgttctccaacactacaactctctcccaaagaagggcaagccgcaggggcgggagtccaccgtcctcgccgccttcctcctctccactccgcagcaggacccccggaatctcactgttctctcgctggccaccggaaccaagtgtctcggcgccgctcgcctcaaccaccacggagacctcgtccacgacgcgcatgccgaggtcgtcgcacgccgcgcgctcctccgcctcatctacaccgagatcggccggagcggcgcttccgattggttggttgcttccggtgagaagtggaagttgagggatgggtaccaccttcatctctacatcacccagattccatgtggagtcatgcctgttccaccatctccctcagagttgctcagggaacagctggatagtgttaatggatgcgatgatgttgggtttgttcaaaggaagcctgggcgtggtgacactacattatcaatgagttgttttgacaaaataactcgctggagtgttgttggaattcaaggtgcattactgtctcacattcttgagcccttgtacctgtccaccattactattggacaatcacctactggtgcttctgatgggttttctgttgaaaataatatcaagaaagttctcgatgctcgactgtcctctctatccagcaaactgctgttgccttttaaattgaacaagccactattttatgaggcacctatccctccaaaagagtttcaacagacttctggagatttgcaacctttgacatgcgggtag</cdnaseq>

Protein Sequence

<aaseq>MLPSSAASSPPAPPPSPWDDVSWAESTSSTVLQHYNSLPKKGKP QGRESTVLAAFLLSTPQQDPRNLTVLSLATGTKCLGAARLNHHGDLVHDAHAEVVARR ALLRLIYTEIGRSGASDWLVASGEKWKLRDGYHLHLYITQIPCGVMPVPPSPSELLRE QLDSVNGCDDVGFVQRKPGRGDTTLSMSCFDKITRWSVVGIQGALLSHILEPLYLSTI TIGQSPTGASDGFSVENNIKKVLDARLSSLSSKLLLPFKLNKPLFYEAPIPPKEFQQT SGDLQPLTCG</aaseq>

Gene Sequence

<dnaseqindica>37..469#598..672#1283..1381#1634..1806#1888..1968#aaagcgtaaaatgcattgacgccttccccgtcctcgatgctcccctcctccgccgcctcctcgccgccggcgccgccgccgtcgccatgggacgacgtctcctgggcggaatccacctcctcgactgttctccaacactacaactctctcccaaagaagggcaagccgcaggggcgggagtccaccgtcctcgccgccttcctcctctccactccgcagcaggacccccggaatctcactgttctctcgctggccaccggaaccaagtgtctcggcgccgctcgcctcaaccaccacggagacctcgtccacgacgcgcatgccgaggtcgtcgcacgccgcgcgctcctccgcctcatctacaccgagatcggccggagcggcgcttccgattggttggttgcttccggtgagaagtggaagttgagggatgggtaccaccttcatctctacatcacccagattccatgtatattcggtttgctgttcgccggttcgcatttttttttaggcttagccgattgtttgatcaattgaaatggcaaagttctacacatttagagttcaatggattccttggtttggtgaattttgcaggtggagtcatgcctgttccaccatctccctcagagttgctcagggaacagctggatagtgttaatggatgcgatggtatgcctctttcttggcattgagcagaacagtaaattcatgtttatagctgctaattttcttttactattagccttacgtttgacaaattgtattaatcagttgatggcttgttagaaatgctttatttgtcctggtaacatttaatttctacttaagtttttcaatgagacgcctactcatgtatctggagtagcagttgattcatgtctttagctgtgacatcgtactgtaactcagtagatatgtcgaagtttcttatttggctgattttccagtacttgttgtttttcctttctgttggaaaaaatggtatcatgaaagtgtgggagtggaactagctcccaggtgctaaacaagttggcgttggtgaccaatgcacaccaattttctagacttggaactggagagttttaatggggattacactaaatctagactccatgggtatataatacagtctgggaaactgatggatctttcatctcggtttaattgtttttttcaagatgtgcctactttgcccgcatgttaaaagtctaattcatttcattgtcttagtgttatttttctgtgtccattttaattggtagactgccttgtgtgacagatgttgggtttgttcaaaggaagcctgggcgtggtgacactacattatcaatgagttgttttgacaaaataactcgctggagtgttgttggaattcaaggtttgttgtccacgatcattttcaattcaatgttataagtttgttgattgcatcctatgtggcagcattttcatgctattcatcatttgctgttcatggcaatatatgctgcagatctgctgaagtaatatatagtggacatgctagtatttctccacaattatattgcttctttatttttctagttacgatattcccgtttcacgggtcaatggatcaactctataaccccttacctctgttctttcacaggtgcattactgtctcacattcttgagcccttgtacctgtccaccattactattggacaatcacctactggtgcttctgatgggttttctgttgaaaataatatcaagaaagttctcgatgctcgactgtcctctctatccagcaaactgctgttgccttttaaattgaacaaggtcggagtggcaatgttgtgtactgatatacaaatcatctgctaacttctcatgacagtggatccgttttctttcctacagccactattttatgaggcacctatccctccaaaagagtttcaacagacttctggagatttgcaacctttgacatgcgggtagtatatggtttgttgtctttataaacttagaccctttttttttagtttacctcatgtagtatgtacatgtttttagtaagagcacctagctttgcaatttatattttactaggtactcgatatgctggaacaaatccggttttcatgaagttgtcttaggaacaactgggagaaaacagggtacatcttcaaaggcagcatgctcaccatccactgagtcattgctctgcaagtaagagggtgcatcctttcccattccaagcatcctgatgcaaaactgttatggtatatttatattctgttttttaactgtaggagaaggttgctagaagcctttgtgttgattgaacatccattagtcaaaaagttccatcgcgaggaaatgtcctaccgtcaaatcaaggtatttcatcttatattggaaaatacagtagcttagtagcgtatgatgaactaacccttttgtcaaacgattctagtgtctgatgaatatgagaagtcaatgactgactactggaaggtggctgatgttctttgcaggatatggctcatgaataccagcagacacttgagcttctcaggaaggctccattttttagccggtggagtgctaagcctgcatccctcgattcattcacggtttcacggtgagattaacccccaaatggctctttgagttcccccagaatgatgttttcagtgctagttttagtgttgaggtgtgttaactctgaatttgttcagaaaatgtatgctcttcagccgatgcagctctgaactactgtacaagctgtcactgtaacaaacctacaaaacttttggcgttattaggttaagatatggataactcatgctgtcttgctcaaatttgtaagggggtaaattaaagtctcatttagacttagacaaggtctcattttggtacggagacccactgaaaatctgaaatgctggatgttaggttgatactactaaattacagtttgcctatcaatggatgttaggttgatactactaaattacagtttgcctatcaacggcccaacctttccttttactgtatgtcatttttttaaaacatttctagccattattcagatgatgtttcacatttgtagttatgttaaaacactagaattccacatgaatttcgtcagatatatagttcagttcccgtcggaaacctacataatttcccactctagcccaatcaccttccagatcgtcgttgccgccggagtcagcgactcatcgctcgccgtcgtgaatctcgtgacgctgccatcgcaaaggccaacacgcatgattggaacggatgatctccccgtctcctttttctgcgtgttttctgaatggatccaatgattagagtcgctaagcagtcaggcattagctgcctgcacgtagtacacggcaggcagttgcacggagtactatctactggcctgaattcgtagctgctgcagtgcagagagcagagtggcctgggatattaagagctgaccagcgcagctgaactgctctgatctggagcatccaacgaacaaatctcttttcataaaagcgaagcttggaccaacctaaacaggagagaaaaaaaaagagagaagaaaacgcgtgttagggtagagaatcatcacggcgaaaaacagaggctgggattgatcaaccgagtgtattaaaattcacaagatcaagtgtaaatttctttctgtactgaaaaaaaaagatgatctctgcactgaagaaatggagagcaaaatgccgaaatgattggggaaaatgtgcagatgtagacatacatatatggcctggcaactttacatctgtgctagtgtatgatctaaggagcattcaatgggtaatggccctctctcgcttttgtctttagtccagtgagtcctcaccgtcctgcactcatctaagcctgcaccaacagctaacaaaaccaggacacaagtgagagcagtacagcagcaaggtcttttacttctgggtacaaagtccaaacatctactagtaatggcgttgtcagccagtaagttcatcagttcatctggcctgaatttcctagaactcgctctaatgatcaagttacaaagagaagaagaagatcttgagatttcttttttgtttgtttgtttgttatgttgaaaaccttcacttgtaagtaaagagagtatttggcaatggcagtggcattgtgggtgtagtggtatagtgcggtgagacagattgtagaggagtttgttgttgctggattcctcaaagacccacttgcttaggagctcctcaagtaatgtacttgcttaagcttcaattcacaccactatcttctgtatagtcgaaactaggataagttaaactaacatatattcagttcttgcttttctctgaggtgtgagagaaatgaaaagggtggccttactcgtgccggcccaattaaacttttaagtggatcgtctacttgacaagtgtcaattggaaattttgcaagtatatatgttatatagattgactttagcctttaggcgtttgctgaatggagtgcaaacatgtttccgaattttcgcttatgaatcaccaaatttcattttgtcatgtagaatataggtatgacttaatgactgactaaaactcttgaaacccggagctatgtctgaagaaatggttgtaattaactaacatattgacaatgacaaagaaccaaaccttcctttccttctctcctttgtttatcatctcactctttcctttctcattaactacaaactgctttacaaaagcatagcgtcaatgccaaccaagcaatgaggcatctgcttcctagatcaatgctaagtacacacttgctctctaaacaaatgttctagtgcaatctaatcatacctacaatacacaagaaatgctagcatcatgcatattttcatcgatcggtctcagcctctgaattcttttaactgccaccagcacaccaggatatgcaaaggcaaaggtgactgcagagaagagaggctggcgatggttgttgacatgggaccattgatttgttgcaaaagacctaagtttttcatggattctgcctagctccacgaatggatgggaggcagagacagatgcagaaattaaaagaatccagcatcagagaccgaaagatacggctaagagaccagacagaccctggaccccaagtgagcacatgcatgtttaaattattgaaagcaaccattaagaaacatatttgcatgtaagtgctcttaatgtaggcaaaaacatattgatggcgcctcttgttcatgaaggaaaagtggtgatgaccgaacttgcaagttttatctgcaatccttttgttgcttctgaaaaactgaatttctcaccctcttggtgctatctttcttgttacttttggattaatgggccttttgtagtgaatttctcaccaatcttgatatatttctgaaaactgaatttctcaccttcctttttcttgtcaattttggatttaatgggctattttgtttgagatataatcagatgaagggttggtggtcgagtgccgagtggcctaatactgcgtgccttgcgccatcagaagagctgtggacacaaacatgatatcttagttggtgtggcctcctcaaccatcaagcaatacagacaaggacccctccaactgcaagaaaaactgccattttacagctcaaatccaaaatctaatctcctcatcttgctaatcaaccattgcctttgccagaaggagaggcctacttttggcttccttgaattatggatttcaataagctggttggaagatgaggaacacttggtgctcactgcaatgatattgctacgtttgaattc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0683500, RefSeq:Os04g0683500