Os04g0683700

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Revision as of 11:35, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os04g0683700| Description = Similar to 4-coumarate-CoA ligase-like protein (Adenosine monophosphate binding protein 3 AMPBP3)| Version = NM_00106...")
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Gene Name

Os04g0683700

Description

Similar to 4-coumarate-CoA ligase-like protein (Adenosine monophosphate binding protein 3 AMPBP3)

Version

NM_001060839.1 GI:115461407 GeneID:4337447

Length

1900 bp

Definition

Oryza sativa Japonica Group Os04g0683700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 4

Location

Chromosome 4:35308443..35310342

Sequence Coding Region

35308610..35309962,35310050..35310253

Expression

GEO Profiles:Os04g0683700

Genome Context

<gbrowseImage1> name=NC_008397:35308443..35310342 source=RiceChromosome04 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008397:35308443..35310342 source=RiceChromosome04 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagaccccgactctgaccacgctgctcaaggcggcggtggccacgttcccctcgcgccgcgccctcgccgtcccgggcaaggtcgacctgtcgcacgcggcgctcgacgcgctcgtcgacgccgcggccgcgcgcctcgccgccgatgcgggcgtgctccccggccacgtcgtcgcgctcgccttccccaacaccgtcgagctggtgatcatgttcttggcggtgatccgagcgcgcgcggtggcggcgccgctgaacccggcgtacacgcaggaggagttcgagttctacctctccgactccggggcgcgtctcctcatcaccaaccccgagggcaacgtcgccgcgcaggcggccgcctccaagctgggcctcgcccacaccaccgccagcctcaaggacgccgccggccaagtccacctcgccggcttccccgcctccgccgccgccgcggccaaggacttcgccaacgacccgtccgacgtggcgctgttcctgcacacctccggcaccacgagccggcccaagggcgtgccgctcacgcagcgcaacctggcggcgtccgtccagaacatccgcgccgtgtaccgcctcaccgaggcggacgcgacggtgatcgtgctcccgctcttccacgtccacggcctcctctgcggcctcctcgcctccctggcgtccggcgcgtccgtgacgctcccggcggcggggcgcttctcggcgtccaccttctgggccgacatgcgcggcgccggcgcgacgtggtacacggcggtgccgacgatccaccagatcatcatcgaccggcacacctcgaagccggaggcggagtacccggcgctgcggttcatccgcagctgcagcgcgtcgctggcgccggcgatcatggagaagctggaggcggcgttcggggcgccggtggtggaggcgtacgcgatgacggaggcgtcgcacctgatgacgtcgaacccgctgccggaggacggggcgaggaaggccgggtcggtggggcgcgcggtgggtcaggagatggcgatcctggacgaggaagggcggcgggtggaggccgggaagagcggcgaggtgtgcgtgcgcggcgccaacgtgacgagcgggtacaaggggaacccggaggcgaacgaggcggcgttccggttcgggtggttccacaccggcgacatcggcgtcgtggacgaggaggggtacctgcggctggtggggcggatcaaggagctgatcaaccgcggcggcgagaagatatcgccgatcgaggtggactcggtgctgctcgggcacccggccatcgcgcaggccgtggcgttcggggtgcccgacgccaagtacggggaggagatcaactgcgcggtgatcccccgggagggcgtgtcgctcggggaagaggaggtgctggcctactgccggaggaacctggccgcgttcaaggtgcccaagaaggtgtacatcgccgacgagcttcccaagacggccaccggcaagatccagcgccgcatcgtcgcgcagcacttcgtcgtgccggtgctgcccaccaaggcgtaa</cdnaseq>

Protein Sequence

<aaseq>METPTLTTLLKAAVATFPSRRALAVPGKVDLSHAALDALVDAAA ARLAADAGVLPGHVVALAFPNTVELVIMFLAVIRARAVAAPLNPAYTQEEFEFYLSDS GARLLITNPEGNVAAQAAASKLGLAHTTASLKDAAGQVHLAGFPASAAAAAKDFANDP SDVALFLHTSGTTSRPKGVPLTQRNLAASVQNIRAVYRLTEADATVIVLPLFHVHGLL CGLLASLASGASVTLPAAGRFSASTFWADMRGAGATWYTAVPTIHQIIIDRHTSKPEA EYPALRFIRSCSASLAPAIMEKLEAAFGAPVVEAYAMTEASHLMTSNPLPEDGARKAG SVGRAVGQEMAILDEEGRRVEAGKSGEVCVRGANVTSGYKGNPEANEAAFRFGWFHTG DIGVVDEEGYLRLVGRIKELINRGGEKISPIEVDSVLLGHPAIAQAVAFGVPDAKYGE EINCAVIPREGVSLGEEEVLAYCRRNLAAFKVPKKVYIADELPKTATGKIQRRIVAQH FVVPVLPTKA</aaseq>

Gene Sequence

<dnaseqindica>381..1733#90..293#gccaaacacacgacacgttctccccacacacacaaaccaacgcgacgcacgagagatttgtacgtgaagcacctgcagcgggcgacccaatggagaccccgactctgaccacgctgctcaaggcggcggtggccacgttcccctcgcgccgcgccctcgccgtcccgggcaaggtcgacctgtcgcacgcggcgctcgacgcgctcgtcgacgccgcggccgcgcgcctcgccgccgatgcgggcgtgctccccggccacgtcgtcgcgctcgccttccccaacaccgtcgaggtaaagcaccagtcacagaagctgttgatatcacggtgacgatcatcgagctgctgatgctgatctggttcttgtgtgtttttgcagctggtgatcatgttcttggcggtgatccgagcgcgcgcggtggcggcgccgctgaacccggcgtacacgcaggaggagttcgagttctacctctccgactccggggcgcgtctcctcatcaccaaccccgagggcaacgtcgccgcgcaggcggccgcctccaagctgggcctcgcccacaccaccgccagcctcaaggacgccgccggccaagtccacctcgccggcttccccgcctccgccgccgccgcggccaaggacttcgccaacgacccgtccgacgtggcgctgttcctgcacacctccggcaccacgagccggcccaagggcgtgccgctcacgcagcgcaacctggcggcgtccgtccagaacatccgcgccgtgtaccgcctcaccgaggcggacgcgacggtgatcgtgctcccgctcttccacgtccacggcctcctctgcggcctcctcgcctccctggcgtccggcgcgtccgtgacgctcccggcggcggggcgcttctcggcgtccaccttctgggccgacatgcgcggcgccggcgcgacgtggtacacggcggtgccgacgatccaccagatcatcatcgaccggcacacctcgaagccggaggcggagtacccggcgctgcggttcatccgcagctgcagcgcgtcgctggcgccggcgatcatggagaagctggaggcggcgttcggggcgccggtggtggaggcgtacgcgatgacggaggcgtcgcacctgatgacgtcgaacccgctgccggaggacggggcgaggaaggccgggtcggtggggcgcgcggtgggtcaggagatggcgatcctggacgaggaagggcggcgggtggaggccgggaagagcggcgaggtgtgcgtgcgcggcgccaacgtgacgagcgggtacaaggggaacccggaggcgaacgaggcggcgttccggttcgggtggttccacaccggcgacatcggcgtcgtggacgaggaggggtacctgcggctggtggggcggatcaaggagctgatcaaccgcggcggcgagaagatatcgccgatcgaggtggactcggtgctgctcgggcacccggccatcgcgcaggccgtggcgttcggggtgcccgacgccaagtacggggaggagatcaactgcgcggtgatcccccgggagggcgtgtcgctcggggaagaggaggtgctggcctactgccggaggaacctggccgcgttcaaggtgcccaagaaggtgtacatcgccgacgagcttcccaagacggccaccggcaagatccagcgccgcatcgtcgcgcagcacttcgtcgtgccggtgctgcccaccaaggcgtaataaaagtctctacctcccgaccaacccatcgcatgccatcgtcctactgtatctatcaagttcgtgtcttgatttgattttttctggttacttcggctacaaccagtagcttcgtttagggttgggtttcccgtgctaacgagtagtaaaatttcggtttcccgtcc</dnaseqindica>

External Link(s)

NCBI Gene:Os04g0683700, RefSeq:Os04g0683700