Os03g0106000

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Revision as of 12:14, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0106000| Description = Protein of unknown function UPF0187 family protein| Version = NM_001055217.1 GI:115450162 GeneID:4331318| Length = 2...")
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Gene Name

Os03g0106000

Description

Protein of unknown function UPF0187 family protein

Version

NM_001055217.1 GI:115450162 GeneID:4331318

Length

2847 bp

Definition

Oryza sativa Japonica Group Os03g0106000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:335218..338064

Sequence Coding Region

335648..335857,336482..336688,336964..337131,337379..337975

Expression

GEO Profiles:Os03g0106000

Genome Context

<gbrowseImage1> name=NC_008396:335218..338064 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:335218..338064 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggcgccgcccaggcccataccctccatccaccggcaaccgcccaagccaaccaccacccacgtcgcccgctgcttccgcgacccgcccaaagcccccgacaccaacagcaacaccaacccgctcctctccctcctctccgccgtgcccgactgggccgacgccgtctccgagcgccgcatccgcgaccgccgcccgctctacacccacgccgactggcgggagcaccgcagctcccgccgccacctgcgccacctcctctcctccctcacctcccgcgtcatcctctccctcgcgccccccgtctccgccttcaccgccttcgccgccgccattgccacctacaacaccctcctccccgcctacgccctcaccgcctcctccctcccctaccagctcaccgcccccgccctcgccctcctcctcgtcttccgcaccgaggcctcctacgcccgcttcgacgagggacgcaaggcatggatgcgcgtcatcgccgccgccgccgacctcgccgggatggccatgcgccaccacaacccccctgccacgcgcgccctcctcaactacattctcgccttcccgctcgcgctcaagtgtcatataatctgccattcggacataaaaagggaccttcagggtttgctctcagaagatgacttgaatgttgttctcagatcaaaacatcgtcctcgctgtattattgagttcatttcacagagcctctatatgttggatttcgatgaaaataagcggaatatcatggagtctaaactatcttgttttcttgaaggaattagtgtttgtgagcagctcattgggattcctattcctctctcatacactagactcacttccagatttcttgttctgtggcatctcacgcttccagtgatactctgggatgaatgtaaatggatagtcgttccagctacttttatcagtgctgcctctctattctgcattgaggaagttggtgttcttattgaggagccattccccatgctagctctagacgagctgtgcaagcagctccatgacagcacgcaggatgtgatgtcggtgcaaaatttggttcacaatcgactagccgccaagacaaaggaccaagacagtggcagcatgcgatgttcagacaacgggtggcctagctccaaaagcgaacaagcaaaaattgattga</cdnaseq>

Protein Sequence

<aaseq>MAAPPRPIPSIHRQPPKPTTTHVARCFRDPPKAPDTNSNTNPLL SLLSAVPDWADAVSERRIRDRRPLYTHADWREHRSSRRHLRHLLSSLTSRVILSLAPP VSAFTAFAAAIATYNTLLPAYALTASSLPYQLTAPALALLLVFRTEASYARFDEGRKA WMRVIAAAADLAGMAMRHHNPPATRALLNYILAFPLALKCHIICHSDIKRDLQGLLSE DDLNVVLRSKHRPRCIIEFISQSLYMLDFDENKRNIMESKLSCFLEGISVCEQLIGIP IPLSYTRLTSRFLVLWHLTLPVILWDECKWIVVPATFISAASLFCIEEVGVLIEEPFP MLALDELCKQLHDSTQDVMSVQNLVHNRLAAKTKDQDSGSMRCSDNGWPSSKSEQAKI D</aaseq>

Gene Sequence

<dnaseqindica>2208..2417#1377..1583#934..1101#90..686#gttcctccgccacaaaccaaacgccaattaatggcttgaccaaccaccgcgcgcgccgccgtctttcgccgacgccgaggaggccggccatggcggcgccgcccaggcccataccctccatccaccggcaaccgcccaagccaaccaccacccacgtcgcccgctgcttccgcgacccgcccaaagcccccgacaccaacagcaacaccaacccgctcctctccctcctctccgccgtgcccgactgggccgacgccgtctccgagcgccgcatccgcgaccgccgcccgctctacacccacgccgactggcgggagcaccgcagctcccgccgccacctgcgccacctcctctcctccctcacctcccgcgtcatcctctccctcgcgccccccgtctccgccttcaccgccttcgccgccgccattgccacctacaacaccctcctccccgcctacgccctcaccgcctcctccctcccctaccagctcaccgcccccgccctcgccctcctcctcgtcttccgcaccgaggcctcctacgcccgcttcgacgagggacgcaaggcatggatgcgcgtcatcgccgccgccgccgacctcgccgggatggccatgcgccaccacaacccccctgccacgcgcgccctcctcaactacattctcgccttcccgctcgcgctcaaggttttgctcttgcatatgttttttttttatatatttaattctgtatttatttatttatttttctactgtatactaccagtgattcaatttggtaacttcactctctgaaattatatttcatgcagttacctttcactagtctctgaaaacatagaccagcgtttgttttcatgcaattatgcctgatttagttagctttcactcactagcgcggcaactgatgatatcattcgtgttcttgcctcagtgtcatataatctgccattcggacataaaaagggaccttcagggtttgctctcagaagatgacttgaatgttgttctcagatcaaaacatcgtcctcgctgtattattgagttcatttcacagagcctctatatgttggatttcgatgaaaataagcggaatatcatggtaagttggtaactcttctatctctacctgcagatttcttgtcttgccaattacctgtaacataactcaacatcattttttttttgtcttgggccactgataccatccattgtgcattgatccaatgttcaatcttactttaggtgtatttacttattgttatcttcattgtcttgtgagagttaccacccgttgatctgcaaacgctagacttacttcaagtctagtaatccataatggtacaatctaatgctgtttacttttcttgattgtaggagtctaaactatcttgttttcttgaaggaattagtgtttgtgagcagctcattgggattcctattcctctctcatacactagactcacttccagatttcttgttctgtggcatctcacgcttccagtgatactctgggatgaatgtaaatggatagtcgttccagctacttttatcagtgctgcctctctattctgcattgaggaagtaagtctcaacttatttttcaaccccaagttgtgcttccatttaaaactgttcaaaattgtgccttggtagctaccagctgcaggcagcaattggccatggttttgaagacattggtgcatttcaaaacagtgatggctgccccttctagaacctggttacaggattagttttagtgtggttttaggatgcatttatcaatatagtcttgcctggttttgcttatgctcgtctttttatcagtctaaaattagtcataactacacatatgtggtttgtctttggagtaacatggaaaggcagctgcaggtggttgagaatcgggttgtcctaattttgggaaactcagtgtatattgctcagcaattagccaacctctgcttgtcttcaaccacacgagatcttagtgaatatgtttcttactactttattgtgtcaaaatgtttagggtacttgtttagctttgatgcttgagaggagaggattcttaaagaatgtagtctgtttttcttcattgtgtttcaccagaaacttgataatcttgcttcagcagctgttcccatttccccattccctacctgtattgtactaccactaacccagtagcacatactcacatttcaggttggtgttcttattgaggagccattccccatgctagctctagacgagctgtgcaagcagctccatgacagcacgcaggatgtgatgtcggtgcaaaatttggttcacaatcgactagccgccaagacaaaggaccaagacagtggcagcatgcgatgttcagacaacgggtggcctagctccaaaagcgaacaagcaaaaattgattgagcaaaggtgcggaattatgaaggctatactagtacatgtcattgcaaagcaataaaggccttgttggttcaatatcaagcaaggtataaatcgatggtgtgcatatgtaccctggctgcatatttgccatcccattcgcaggtccattttggtacatggatgtactccagtacgagagctaggatttcatcatccaatgtaaaattgattaagcgatcagatgcggtgaccttacgtagcctagtttgctggaggaagcatgcgtgttacggatgtagagagatatggtgaatagttcctagatgtgtgtatatatgtagaaaagattttgacgagccgtatcagcccgtatgtaaagatttgacattacgtactgttatgttgttattgccaaacagaatacagtagctggtggaagggctttgacatg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0106000, RefSeq:Os03g0106000