Os10g0154000

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Revision as of 08:31, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0154000| Description = Similar to Vesicle-associated membrane protein 714 (AtVAMP714)| Version = NM_001070719.1 GI:115481181 GeneID:4348130|...")
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Gene Name

Os10g0154000

Description

Similar to Vesicle-associated membrane protein 714 (AtVAMP714)

Version

NM_001070719.1 GI:115481181 GeneID:4348130

Length

2443 bp

Definition

Oryza sativa Japonica Group Os10g0154000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:3337075..3339517

Sequence Coding Region

3337454..3337544,3338358..3338521,3338615..3338805,3339088..3339322

Expression

GEO Profiles:Os10g0154000

Genome Context

<gbrowseImage1> name=NC_008403:3337075..3339517 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:3337075..3339517 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgatcgtttacgcggtggtggcgcgtggcaccgtggttctcgccgagttctctgccgtctccgggaacgccggcgccgtcgcccgccgcatcctcgagaagcttccgcccgacgccgagtcgcgcctctgcttcgcgcaggaccgctacatcttccacgtcctccgctcccctccccccgccgccgccgatggcctcaccttcctctgcatggccaacgacaccttcggaagacgaattccctttctttacctcgaggacatccaaatgaggttcatcaagaactatggcagaatcgcccataatgcgctcgcctatgccatgaacgatgagttctctagggtcctccatcagcaaatggagtacttctccagcaaccccagcgccgacacactcaaccgtctccgtggggaagtcagtgagatacatactgtcatggttgacaacattgagaagattctcgacagaggtgagcgcatctcgctactcgtcgacaagacctccaccatgcaagacagtgctttccacttccgcaagcaatccaggaggctcaggagagctctttggatgaaaaatgccaagcttcttgctgtgttgacagctgtcatagtacttctactttacttgatcatcgctgctttctgtggaggcctttctcttccatcgtgtagatcatga</cdnaseq>

Protein Sequence

<aaseq>MAIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRL CFAQDRYIFHVLRSPPPAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAH NALAYAMNDEFSRVLHQQMEYFSSNPSADTLNRLRGEVSEIHTVMVDNIEKILDRGER ISLLVDKTSTMQDSAFHFRKQSRRLRRALWMKNAKLLAVLTAVIVLLLYLIIAAFCGG LSLPSCRS</aaseq>

Gene Sequence

<dnaseqindica>1974..2064#997..1160#713..903#196..430#ggtcgccgccccgtctcctcgcttgccggttacaaggacgacctcgtcggggcggcggaaccctccagcctccgggctcgccgccgccgccaagctcgcatcccgcgccggccgccgagctcgccgcccaaccccaaccccaaatcaatcagatcaattcaactatccaagcctaagttgttggatctagaatccatggcgatcgtttacgcggtggtggcgcgtggcaccgtggttctcgccgagttctctgccgtctccgggaacgccggcgccgtcgcccgccgcatcctcgagaagcttccgcccgacgccgagtcgcgcctctgcttcgcgcaggaccgctacatcttccacgtcctccgctcccctccccccgccgccgccgatggcctcaccttcctctgcatggccaacgacaccttcggaagtacaaactctcttatacttactagtattactctactaatctatatgatctatggataggataagatggattcgttcattcatcttcttagtatgttcttcattcattcaagatggtaaactgtattgcttcattagctaatttaggcatttttgcatgtacttattcatttatgttcctttcatacaactattttactgttactactctattagtagcgagccagcgaaatccagacatactagtatgatagagcatcacttgttgtataattaattacaggacgaattccctttctttacctcgaggacatccaaatgaggttcatcaagaactatggcagaatcgcccataatgcgctcgcctatgccatgaacgatgagttctctagggtcctccatcagcaaatggagtacttctccagcaaccccagcgccgacacactcaaccgtctccgtggggaagtcagtgaggcaagtatcctatttatttattgccttccacacaatttcctttcatttttgctctacaatcaaatgctcattcttccaacttgcattgtgcagatacatactgtcatggttgacaacattgagaagattctcgacagaggtgagcgcatctcgctactcgtcgacaagacctccaccatgcaagacagtgctttccacttccgcaagcaatccaggaggctcaggagagctctttggatgaaaaatgccaagcttctgtaagtcaccctttctttctttctttcttgcttactactgtactatctatctcttctcttctttaccactcactgacagtacccattaactagtggtcagtcctgcactcaagttcatttgttacaagttactccctaatgacaagtcctgattgatgttataaggcccttcgagattggtacttagccatggacatttgttattccctttttttcctgccagttatagtttaccaaatcctgaattcagcctgaatgaatgtataatcacaaaagtttagagccaacaaagctgcaatttccttttctgaggccaagtctaaagagctttattcatcagtggaaataccattttgcgcgatagtatctcctaagaattcaggagtgcatgtttaaatgagcacactctgcacaatgatgaagctgcaatttctttgctagtccaaaattatgtaatcatgtgccttcggttggtcattattgttgaatagacatgttggataagtgtataactatatatcactcagtgacccttgttgaatggaataagctggtgtatcattgagtttgagaacaatgggctattgctattctgtttttgctggggtttgaaagaattggtgattaatagcaggcataacgaaatactactagtttttttttaaggatctagaaaactgtgtgtttggttgctgattgccatacattatatgtataagatccaaccctttatttattatgatgactctaagatctacagtactaataacatttttgacagcatctgacatattttgtcctgcgttgttgcagtgctgtgttgacagctgtcatagtacttctactttacttgatcatcgctgctttctgtggaggcctttctcttccatcgtgtagatcatgatccgctctacagatttacctcaattaaagcatcacaccatgtaacaacaatgcaagcctatcaatgccatgtgtcgtatctgttcagcacccaaagttacaagtgatgttttgagaaaatgatttggtgctgagttttcgttatcgggagggttgtgctccttcaagttaatatggaacggtttgtacaaaatgggatctatatgtacagtagtatgtcgtttgttgtttgtgttggctaagacttttctgtaccgttgtgcttgcacatgaattggatgttttgcctgatgatatgagtgctgtggtatgccctttccttaactaaagcgaatggcatgtaatattctcaagagaatatatgaatatggtttatgagt</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0154000, RefSeq:Os10g0154000