Os03g0128500

From RiceWiki
Revision as of 12:17, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0128500| Description = Similar to DNA polymerase delta small subunit (EC 2.7.7.7)| Version = NM_001055376.1 GI:115450480 GeneID:4331489| Le...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0128500

Description

Similar to DNA polymerase delta small subunit (EC 2.7.7.7)

Version

NM_001055376.1 GI:115450480 GeneID:4331489

Length

4117 bp

Definition

Oryza sativa Japonica Group Os03g0128500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:1590672..1594788

Sequence Coding Region

1591207..1591266,1591661..1591728,1591795..1591896,1592062..1592189,1592266..1592357
,1592462..1592533,1592628..1592696,1592780..1592863,1592956..1593071
,1593176..1593280,1593416..1593539,1593611..1593717,1594389..1594518
,1594598..1594630

Expression

GEO Profiles:Os03g0128500

Genome Context

<gbrowseImage1> name=NC_008396:1590672..1594788 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:1590672..1594788 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagaggaagcaggcggagtacagcaacctcgacgagaggtacgcgatccagggggagaagtaccaggggcagcagtacagccacatctacttcacgcgactccaccacatgcgcaacctcctccacgccctcgtcccctcctggaagccgcaccttcctgttactactgtgttgggacttgaagaaggaaaggattgcataatcgttggaactttatataagcacatgaaattaaagccttccattcttgatgaatattctaaggagaggtctgctattcctcttgttaaaccacacaatttcatgcatcctgatgatcatctcattctggaagatgaaagtgggagagttacacttgcaggagccatacctccagcagcatatgttactggagttgtaatagctttacatgggaaagaaacaagtgctggcaactttcttgttgaagatattcttgaggctgggattcctcctcaaattacgttacctagcataaacgaggacaaatatgtggtatttgtgtcgggattaagtattgggagtgaaaaattcaatcctctgcaattccaacttcttatagaccatatcacagggcatttgggtgatgagaatgagcaatccatagcatccaacatagtacgtgttgtggtggctgggaattcggtacatatttctccaagattcttcaatggtcaggcagtagcatcgaaagatcaatccaggatagctgaaccaatcaaagaattggatataatgctcactcagcttgtggcatcattgcctgtggacatgatgcctggatctaatgacccagcaaatttttctttgcctcaacagcctttgcatagatgcctttttgctggagcagccacttataacactttttcatcgtgctcgaatccacatcaattcgagcttgatagtgtccggtttattggaacatctggacagaacatagatgacctctacaagtactctgatgccaaagacaagctggaattcgtggaaagaacactgcggtggcgtcatcttgctccaactgctccaaacagtctaggatgttatccatacacagacaaggatccttttctcgttgaaagctgtccccatgtttacttcgtcgggaatcaagataaatatgaaactcaattattgcaagggctagaaaaacaaaaagtgaggctgatctgcattccaagattttgtgatagtggagttgctgtcatgctcaatttgaggaacttggagtgcagcacgttgagtttctcaacaagcttcgatgcttga</cdnaseq>

Protein Sequence

<aaseq>MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHA LVPSWKPHLPVTTVLGLEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNF MHPDDHLILEDESGRVTLAGAIPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQ ITLPSINEDKYVVFVSGLSIGSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVV AGNSVHISPRFFNGQAVASKDQSRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFS LPQQPLHRCLFAGAATYNTFSSCSNPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLE FVERTLRWRHLAPTAPNSLGCYPYTDKDPFLVESCPHVYFVGNQDKYETQLLQGLEKQ KVRLICIPRFCDSGVAVMLNLRNLECSTLSFSTSFDA</aaseq>

Gene Sequence

<dnaseqindica>3523..3582#3061..3128#2893..2994#2600..2727#2432..2523#2256..2327#2093..2161#1926..2009#1718..1833#1509..1613#1250..1373#1072..1178#271..400#159..191#gagggttggcgacgccgcgggcggcgcgcgaagcaaatggagcgcgattttggcggataaatttgggcgcgcggaggcgggaggagcgggaaccaaatcgcggagccgcttccaacctcaggtctcaccccaaactcgccgccgccgccgccgccgccatggagaggaagcaggcggagtacagcaacctcgtaagcttctccttcttttgattctcgaatcacctcgatttgggttctgggctgagcaatggcgattgggggatggcaggacgagaggtacgcgatccagggggagaagtaccaggggcagcagtacagccacatctacttcacgcgactccaccacatgcgcaacctcctccacgccctcgtcccctcctggaagccgcaccttcctggtccgacccctcgctttttcctaaatcgttagggtttctctgctttgtttttggagcttgaactgtttttgggagttgattgcgatgtagcatgatgggtttagttagggtttatgtgctggcatgtggattctctggttcgctctacaaaattctgggggcgaaatttcaggcccattgagctcatattagggttttagaagcaatttggcacatcggctacgatctttgctccatccatagtgtgaatgtatgaccatcaactgagtttttttagggggtgttatgagcttgtcctgtgctagtttgtctatgcttgctgaaaatagtattcacaaaatactgatttggcatcttctatttaccaatagatttttattggttggtgaatgtaactgaactaaaaaaaacatttttcttactaaatgctttgtccagcagttaattcgcaatgaagctagtaatcaatcgtaagatcttttgctggcattatttagtcagtatgaatgtttgatcttatgaaatgtgcctccttattaccaagattgaacattggatccatttgccgcgtgtctatcttagttcatggaaatggatcgtgtaagagacacttgcttttatgcatccacagagcgtttaaacttcaaatcacgcctcttgctgttctgcagttactactgtgttgggacttgaagaaggaaaggattgcataatcgttggaactttatataagcacatgaaattaaagccttccattcttgatgaatattctaaggaggtaatttagcatgtcttgtcttcttatccttattaacttggatggcctctgaatgaactattgtgctacagaggtctgctattcctcttgttaaaccacacaatttcatgcatcctgatgatcatctcattctggaagatgaaagtgggagagttacacttgcaggagccatacctccagcagcatatgttactggtatgtctgatatttttcactgaaaagttaagtttgcaaattctagactagtttctttatgattgtagcatttgtcgaacaattttatccaatatatcatgttgcttggaatactcacccaccaattgtccacaggagttgtaatagctttacatgggaaagaaacaagtgctggcaactttcttgttgaagatattcttgaggctgggattcctcctcaaattacgttacctagcataagtaaattttttcctatcctggcttgctcattctccattttccccatttgcctacacaagttttgatggttagatctcttacattggcatttacctctgttacagacgaggacaaatatgtggtatttgtgtcgggattaagtattgggagtgaaaaattcaatcctctgcaattccaacttcttatagaccatatcacagggcatttgggtgatgagaatgtatgcgcctttttattttatttttcccaaaatgaaggttttcaagtgaagatatgcactaaatttagatgatctctttgcaatttaattaggagcaatccatagcatccaacatagtacgtgttgtggtggctgggaattcggtacatatttctccaagattcttcaatggtcaggtaatgtcactgcatattacatgtttttggtgaaactccatagctttagtttattgcactagtggtgaacactgatatttcaggcagtagcatcgaaagatcaatccaggatagctgaaccaatcaaagaattggatataatgctcactcaggtttcaaccgtttactcccccctcaaatattatcaacgcaattaattattcaggtttatgatgtcagtatgaatgtaatccatttcttctgcagcttgtggcatcattgcctgtggacatgatgcctggatctaatgacccagcaaatttttctttgcctcaacaggtgggctattgacatggaaaaataatgactaatttgcactagtaacattcaagcatgtttttatgcatgcatgactaacttatgtcttgctttttttttggcagcctttgcatagatgcctttttgctggagcagccacttataacactttttcatcgtgctcgaatccacatcaattcgagcttgatagtgtccggtgggtgttggtgtttttttaactttcctcaattaaagcagctgtggagtttgaagtatggaagttctgcatgtaggtttattggaacatctggacagaacatagatgacctctacaagtactctgatgccaaagacaagctggaattcgtggaaagaacactgcggtggcgtcatcttgctccaactgctccaaacagtctaggtaactcttcaggcatttcagccccattgtgctatgctgtgattgcttggtaaaaaacctgtattatatcatccaactgtttgtaattcaatttcattattgatttagtgaccatttttatagcaaagctagaacccttctcatgtaaatatctgtttcacccaggatgttatccatacacagacaaggatccttttctcgttgaaagctgtccccatgtttacttcgtcgggaatcaagataaatatgaaactcaattattgcaaggtactgcttcatgtaaggttcctatgttgttttagcgcccaactaaacatatttgtcatcatgcagggctagaaaaacaaaaagtgaggctgatctgcattccaagattttgtgatagtggagttgctgtcatggtaaatacctctagttgtatgctgactattggtaaagctgcgctgttttatctttgcaatctagaaagttataaggaggccaagtcatcaagtggggattagctccttttacacatcgtaaaaagttcacgaatgatgaaccagtaaaacaatttcatacacttctttgtggaagatttaaaaaaccatgacaaaccagaagtcctctttgaagatggacacttttcctttggtcttctgtcttagtatagtacatagccttgatttatgtatgcgtatgcaaacatttttctttgccctttttttgtattctaacacttaacattgttttttatatgcattattgcatacacagataaattgctgacaaacacaagtatatattttaatgcagctcaatttgaggaacttggagtgcagcacgttgagtttctcaacaagcttcgatgcttgaccatgctctacttgtctggagtgcaagtgagttgatgtagcatgctgctgtggacatcttaatcctgaactggcgcagggttgtctaaaggatgtacttgtagttctttttttagattgtgatgacctaggtttctccaattagatgtgttgatataattgcctaaacctcgatgtatcaaaagctgaaatagagggtgcacggtttgtactaaacaaaaagaagcgtatgcttcttttctcggtatgagtatccacagctgatttattcgtcagatgttgtattctttctcatcagtcttagaaaatgtatatttcggatcagatatgcagatgcaaaattgcacagcagacagcagagtaaattagattactgctagtctctagaagtttagcttgagttagatgtcttccccaggttgcagaagatggagttgttgttcaacatgaacgggaagagttaagagtatttttcccctaattccagactctaagaattgatatatttggtgtggttcgacttacccttattttgg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0128500, RefSeq:Os03g0128500