Os03g0130500

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Revision as of 12:17, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0130500| Description = EPS15 homology (EH) domain containing protein| Version = NM_001055390.1 GI:115450508 GeneID:4331503| Length = 7750 b...")
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Gene Name

Os03g0130500

Description

EPS15 homology (EH) domain containing protein

Version

NM_001055390.1 GI:115450508 GeneID:4331503

Length

7750 bp

Definition

Oryza sativa Japonica Group Os03g0130500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:1698503..1706252

Sequence Coding Region

1698887..1699330,1699413..1699524,1700198..1700501,1701022..1701090,1701207..1701321
,1701404..1701475,1701582..1701680,1701812..1701883,1702058..1702129
,1703604..1703818,1703941..1704159,1704456..1705740,1705934..1706062

Expression

GEO Profiles:Os03g0130500

Genome Context

<gbrowseImage1> name=NC_008396:1698503..1706252 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:1698503..1706252 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgggatggaggccttcgaggcctacttccgccgcgcggatttgaaccaggacggccgcatcagcggccaggaggccgtcgccttcttccagggcgccaacctgccgcagcaagtcctcgcccaggtatggatgcacgccgacaagaacaagaccggcttcctcggccggccggagttcttcaacgcgctgcgcctcgtcaccgtggcgcagagcgggcgtcagctcacgcccgacatagtgcagtcggcgctgtatggccctgccgctgctagaattccagctcccaagatagccggcggcgggcaagctcccccgcagatggctgcggcgggcgctcccaggccgcaggtaaatgccgcggtgtcacctgctccagggcaggctggagctccgcagccgcagatgaatgttgctggtgctccaaggcctcagggaagtggtatgatgccgggctctgctcaaattggcggttcgcagcaggtgaacgccggagccgtgccaagaccccaaggggtcaattctatgatgccggctgcaagtcagggtggtgctctgcagccaactcagtttgcaacgcagaggggaatgcaatcacagccgcctagcatggggtttaatcaacagcctcctccttcgagtactggtttcatgaggccaactcagccaggagctccagcagcatcacttcaaggccaaggacccgggattaatcaagtaccactaggaggaggcagcatgggagcacctgctggttggcgaggaggcaatgttggttccgttggaggtctcccgcaagctactccaggagcaactgctccacaacaagcaacaccgggtggatttggtcttacattgtctagtacaatgggcatggctcccggacaacaggcacaaggaacgcctccttcgtcaatgccaccacaaagcaacagtgctgtatcagctcaagattcgaaagctttggtgctgtctggaaatggctctgccagtggcttaggagcaagcaatgacatcttctctgctcttactcagcctaagtcgaatgtatccacactttcatttccgacgagcatggctcctaattcatccagttttatgtccacaccatctggctcccagaacctgtcgaatctagctcagtttggttctcaacaaggtattccgacagtgagttctggtggcagtcaacctcaacagactcatcccatcacaaagccgagtgttccagcaccaactgtatctggtgtttctgctggagtttctaattcagcttctcaatggccaaaagttactcagtctgacatccagaagtacactaaagtctttgcggatgttgatagggacagagatggcaaaataactggcgcggaagctcgcaccctgttcctcagttggagacttccaagagagattctgaagcaagtgtgggacctgtctgaccaagataatgatggcatgctttctttgagagagttttgcattgctctttatttgatggagaggcaccgagctggaactcctttgcctccagcacttcctgactctcttaaatatgatgaggtactgctgcgtgcaacaggcttgccttcaacagcatacaacggcccgtcatggcaacaaaatcaaggactgccacacaagggtcctggagcagctgggatgcctgctactggtgtgcggcaacctttgccaccacatttgcaggcacagatggatggtgctaacagaccagggcaaccaagacctcacatgcctggtatggataaccatgcagcacctcaagcaaataaagatgacggaagtggagcgaactcagctgtgcaggaggatgcccctaagaaggttgaggtggagaagcaagtcctagattccagagagaaactagaatactaccgtacaaagatgcaagatcttgttctgtacaaaagtcggtgtgacaacaggctgaatgaaatcacagaaagggcatcctctgataaacgtgaggtggaatcattagctaagaagtatgaagagaaatacaagcaagtggcagagttagcttccaaactggcagttgaagaacatgccttccgtgatgttcaggagaggaaagttgaactgcatgatgcattagttaaaatggtacaaggtggaagtgttgatggtttgcttcaggttcgagctgatcgaatccaataccaattagaggagatggagaaagcttttagtgaacggtgcaagcactttggactgcagttcaagccatctgcatcagttgagcttccttttggttgggaacctgggaagcaagagggggcaattgagtgggatgaagactgggacaaatttgaggatgaagggtttggttttgtaaaggacaatggtacaattgttgaaaacccagttgcttctgaaaatgtgaaagtgccatctctctggaatgatatggatgagagccctgttgcatcttcgaacggtcacatcaaggctgagagacattacagagctggtgatcatgcagctgagagtgacttagggtatgattttggtgaggaatctgtaaggagccccagcagtgctggaagaagtgcatctggaagtccatttgtgtcttcaaattttgcgatgcatgactcatctcccagcaaaaaggaaacctacagtgaccatggtggttctgaatccatttttggtgacaaatatgccgatgaaacctcctggaactttgatgaccaagacactgaatctgtttggggatctaatgcaatgaacaacgagtctgaccatcatggaagtgcacacaactctttctttgggtcagatgacttcggtgtaaatcctgttagggtgggctctccaagtggtgccagtacctatggaaagaagaaaagttcattctttgatgattctgttccaagttcacctgcatacacatctggattctcaccaaaattcagtgaaagccgcgatgatagctcctcatataacttaggaaggttcgattccttcagatcccaggagagcggattcttccctcaggaaagtcgtttttccaggtttgactccataaacaactccaaaggtgagaatgtaactggattcgattcaccgaaaagctcaacaaatttcggtcggtttgattcttttgatgatgccgatccatttggttcaagtggaccctttaaagcatcaggtagcaggtctccccccaaattctga</cdnaseq>

Protein Sequence

<aaseq>MAGMEAFEAYFRRADLNQDGRISGQEAVAFFQGANLPQQVLAQV WMHADKNKTGFLGRPEFFNALRLVTVAQSGRQLTPDIVQSALYGPAAARIPAPKIAGG GQAPPQMAAAGAPRPQVNAAVSPAPGQAGAPQPQMNVAGAPRPQGSGMMPGSAQIGGS QQVNAGAVPRPQGVNSMMPAASQGGALQPTQFATQRGMQSQPPSMGFNQQPPPSSTGF MRPTQPGAPAASLQGQGPGINQVPLGGGSMGAPAGWRGGNVGSVGGLPQATPGATAPQ QATPGGFGLTLSSTMGMAPGQQAQGTPPSSMPPQSNSAVSAQDSKALVLSGNGSASGL GASNDIFSALTQPKSNVSTLSFPTSMAPNSSSFMSTPSGSQNLSNLAQFGSQQGIPTV SSGGSQPQQTHPITKPSVPAPTVSGVSAGVSNSASQWPKVTQSDIQKYTKVFADVDRD RDGKITGAEARTLFLSWRLPREILKQVWDLSDQDNDGMLSLREFCIALYLMERHRAGT PLPPALPDSLKYDEVLLRATGLPSTAYNGPSWQQNQGLPHKGPGAAGMPATGVRQPLP PHLQAQMDGANRPGQPRPHMPGMDNHAAPQANKDDGSGANSAVQEDAPKKVEVEKQVL DSREKLEYYRTKMQDLVLYKSRCDNRLNEITERASSDKREVESLAKKYEEKYKQVAEL ASKLAVEEHAFRDVQERKVELHDALVKMVQGGSVDGLLQVRADRIQYQLEEMEKAFSE RCKHFGLQFKPSASVELPFGWEPGKQEGAIEWDEDWDKFEDEGFGFVKDNGTIVENPV ASENVKVPSLWNDMDESPVASSNGHIKAERHYRAGDHAAESDLGYDFGEESVRSPSSA GRSASGSPFVSSNFAMHDSSPSKKETYSDHGGSESIFGDKYADETSWNFDDQDTESVW GSNAMNNESDHHGSAHNSFFGSDDFGVNPVRVGSPSGASTYGKKKSSFFDDSVPSSPA YTSGFSPKFSESRDDSSSYNLGRFDSFRSQESGFFPQESRFSRFDSINNSKGENVTGF DSPKSSTNFGRFDSFDDADPFGSSGPFKASGSRSPPKF</aaseq>

Gene Sequence

<dnaseqindica>6923..7366#6729..6840#5752..6055#5163..5231#4932..5046#4778..4849#4573..4671#4370..4441#4124..4195#2435..2649#2094..2312#513..1797#191..319#gcaagttggcacgctcaccatctcgacacccggaggaggaggaccccaaccactgccctcgcagacagagaggagaagagcgcctcctgcctgccgctgcagccgcccgcgacacgctcccccctcccgagatctccgccgctcgccgccgcagatccgcgcggcgtggactccggcccagatcccggcgatggctgggatggaggccttcgaggcctacttccgccgcgcggatttgaaccaggacggccgcatcagcggccaggaggccgtcgccttcttccagggcgccaacctgccgcagcaagtcctcgcccaggttcgtcccgacgacacccccctcctccctcgccgccgccgctgctaatggccactctccgattggggagagagtgcgcccgattttaggcgtgatctcggtggtggatggtagtagcagtagtagatctctctcgctcccgcgaattcgaatgagttgatggttgttggtgtcgggacttcgtgtgttgcaggtatggatgcacgccgacaagaacaagaccggcttcctcggccggccggagttcttcaacgcgctgcgcctcgtcaccgtggcgcagagcgggcgtcagctcacgcccgacatagtgcagtcggcgctgtatggccctgccgctgctagaattccagctcccaagatagccggcggcgggcaagctcccccgcagatggctgcggcgggcgctcccaggccgcaggtaaatgccgcggtgtcacctgctccagggcaggctggagctccgcagccgcagatgaatgttgctggtgctccaaggcctcagggaagtggtatgatgccgggctctgctcaaattggcggttcgcagcaggtgaacgccggagccgtgccaagaccccaaggggtcaattctatgatgccggctgcaagtcagggtggtgctctgcagccaactcagtttgcaacgcagaggggaatgcaatcacagccgcctagcatggggtttaatcaacagcctcctccttcgagtactggtttcatgaggccaactcagccaggagctccagcagcatcacttcaaggccaaggacccgggattaatcaagtaccactaggaggaggcagcatgggagcacctgctggttggcgaggaggcaatgttggttccgttggaggtctcccgcaagctactccaggagcaactgctccacaacaagcaacaccgggtggatttggtcttacattgtctagtacaatgggcatggctcccggacaacaggcacaaggaacgcctccttcgtcaatgccaccacaaagcaacagtgctgtatcagctcaagattcgaaagctttggtgctgtctggaaatggctctgccagtggcttaggagcaagcaatgacatcttctctgctcttactcagcctaagtcgaatgtatccacactttcatttccgacgagcatggctcctaattcatccagttttatgtccacaccatctggctcccagaacctgtcgaatctagctcagtttggttctcaacaaggtattccgacagtgagttctggtggcagtcaacctcaacagactcatcccatcacaaagccgagtgttccagcaccaactgtatctggtgtttctgctggagtttctaattcagcttctcaatggccaaaagttactcagtctgacatccagaagtacactaaagtctttgcggatgttgatagggacagagatggcaaaataactggcgcggaagctcgcaccctgttcctcagttggagacttccaagaggtgggatctcatgactagcatttaattcttctaactcctaagtatgcaaatgcttgtttctgtctgtaagatactctaattcctttcttttgtgaagttcttgtacacattttctgttttagcttattgttttacgctgatttgttatgtttactgccataatacttgtggtgtaggttataatttcgactaattctatttctatgatagttttcttaagatgccaaacatatccccttgggatggagttctgttgcaaacgtctaatgcaagtgatgttcttctataattttcagagattctgaagcaagtgtgggacctgtctgaccaagataatgatggcatgctttctttgagagagttttgcattgctctttatttgatggagaggcaccgagctggaactcctttgcctccagcacttcctgactctcttaaatatgatgaggtactgctgcgtgcaacaggcttgccttcaacagcatacaacggcccgtcatggcaacaaaatcaaggtaagtgataatactggctaccagatttcaattattatttcataactttgtcacaacatgatatcttgtgtctacctctcgttgtgctctcttcgctcataaggtattttatgttgggccaggactgccacacaagggtcctggagcagctgggatgcctgctactggtgtgcggcaacctttgccaccacatttgcaggcacagatggatggtgctaacagaccagggcaaccaagacctcacatgcctggtatggataaccatgcagcacctcaagcaaataaagatgacggaagtggagcgaactcagctgtgcaggaggatgcccctaagaaggtatttgaccacttccttaaatcctgaactgtctgtactgaactggtgatctaaatatcagtcctgatccactttgagcaggctaattcttcaatggtaaacagcagctgatgcacatatataatggttaaagacatcttattattcattcaagcaaccgcaactctatgatatatccaaataatacttgcatacataatttagcaatagctttgttgtagcggatggtagggtttgttcacacgaggaatcgtccaattgttgaagaaagaagcaagcaatctttactcttatgaaagtggtgattgggggttatggtgtgttcgacactcaatccccacttagatattttgtgattgcaaacatgtaggcatatgcatactgtctcaaaagatttttacaaagaaaaatgcttatttccacacgagtacacgcagatggttgatcggtatcatgtagtcacatatacaatttttagattccaggatagttacttatttatttatttatttatttgcatttatgcactctgaaccattatgatctgctgcgacacatgggaaagatgctagtttaaccatagtagctaaatcaagaggcaaataccacatatgatacagagttatgtatgaactttctgttggtagttgtttatgaaagagtaaagtgcatgggcggtccctaaacttgtgtgggtgtgtcaactaggtccctgaactctcaacatgaatttttgggtccctcaatttgtctcgggtgtcatgtaggtccaaatgggttccaacccactccgtgtgctgacgtgggatgacatagtggcacctacatgtcagtggaacccatatgtcagccacaacaagaaaaaattaagaacatatttttttctcctctcttttttcatttattttttcaaaattaaaaacatccttttcttctctctctcctctctttttaaatttatttttttctatatgactgacatgtggatccactgacacgtaagtgtcactgtgacatgccacatcatctcatggagcgggttggagcccgtttggacctatatgacactcatgacaagtttggggacccaaaaaattcattttgatagtttagggacctagatgatacatccgtacaagtttaaggaccgcctgtgcacttcactccttatgaaattatttcatcccccactaatgtctttatgaaattctgactttgtgccatacaagtttccattccatgcattattaagttgactgatatatgctgatactctgtttcttggcactcatcgattgcaagttcaggatagcttttttctcttgattaagtgatattattatctttttgtaccttccatcccaacttcctataaatgacagttagagccgtaagtattgcttaatatatgttatattttgctcttttacgaactttgaaacaaattgtcttttgtctcttttgcattgtgaaggttgaggtggagaagcaagtcctagattccagagagaaactagaatactaccgtacaaagatgcaagatcttgtaagcacacttgtaatctcttactagttttcatgtgcaaaatgatttggttaattaaagtaattctggcttgtacatgtgctgattttttaaatgaacataactaggttgctgaaaattgatttattaatgtgatttagttatcattcctttatttgttttgtcttgtcgaaggttctgtacaaaagtcggtgtgacaacaggctgaatgaaatcacagaaagggcatcctctgataaacgtgaggtacagaacatgcttattactttatccccttttggggccgtttgatcttgcttttaaatatttggaagcatgcaggtgttaggaatcattaatttgtaacacactgatgggcgatttttattttaattcaggtggaatcattagctaagaagtatgaagagaaatacaagcaagtggcagagttagcttccaaactggcagttgaagaacatgccttccgtgatgttcaggttgctctgcgctgcaccgcataaaattaccacttgaattttttgctgcaatcttcttatctcttgtctctctgtgttgaatcaaagttggttggtttttgttcaggagaggaaagttgaactgcatgatgcattagttaaaatggtacaaggtggaagtgttgatggtttgcttcaggtatgttctaactttgttaggtacttaggtgttgtcacctatctctcttgaataacactgtgcactgttccactgttcctaggttcgagctgatcgaatccaataccaattagaggagatggagaaagcttttagtgaacggtgcaagcactttggactgcagttcaagccatctgcatcagttgagcttccttttggtactacactatccaactcctggcatgttatcagtagaacaaaatactgccctagtgcaatttcacttcctgcattcttcagatacataatctgcgagtttgtccttgtttgttaggttgggaacctgggaagcaagagggggcaattgagtgggatgaagactgggacaaatttgaggatgaaggtaaaataacgctttcatgccatcctgcttgatactgttattgcttaagaatacttgaaatgaattgatttcctattatattgaagttgaaaactttgtttattcaatccaaaccagtaagtaattcttgaatgatttaaatgtctgccatttatcttctctgagttgttgctaatggcagctattttgcatcttaaataataaagcatgactgtgtttatgactattatatagtgtgtggtacaacttttaaatgtaaattatgtagataaaatttactcggtattcttatcattctgttgattacccactgctcatatttaggatagcagggcaatctgttcagtaacaaatgtttctcactagaacattgatggtatggcagtaaacatgtttggtagtaaagataacacacatctcaatcacattagcttcattcgttcagatttagtgtcttctacttggtcaacctaattctctcttttttcagtttatctgactaaatcatatattttaacagggtttggttttgtaaaggacaatggtacaattgttgaaaacccagttgcttctgaaaatgtgaaagtgccatctctctggaatgatatggatgagagccctgttgcatcttcgaacggtcacatcaaggctgagagacattacagagctggtgatcatgcagctgagagtgacttagggtatgattttggtgaggaatctgtaaggagccccagcagtgctggaagaagtgcatctggaagtccatttgtgtcttcaaattttgcgatgcatgactcatctcccagcaaaaaggaaacctacaggtacaagttttcccattttggatagtgcacaattcttattctataatgtttgacttgctacctacatgatcactagaactgagatatgccaggcatagtttaattgaacagaatgggctgtatttacaaatttgaaacaagtcagcatgtttctctgcagtatagtgcggagccatctggtgccacaacatgggtccactttcagtatcctattctagtccacttgtaaatagttcatgtattgctctggctataagccttccatcttgcgaggctgtgacagttttctccaatggatggaagcttagggtttccttagttccatatgttcctagcatgactgcatgagtcaagattatccatagggtttctttagcagcagtcgatcatgatgggtagctggataccatgtcgttcacacattagattttctgtacaccagattccctcaccttattttaacaaaagaaaatatagtaggaatgcatgatattcagcattgtttcgtacttcctagaaatgcgtctccacggtctttacactgtatgagtgcatgtgctgaccgtttgtggaaaagattctgtagaatgctcaattgtgatcataccttagatagtattgaaccatgtaattttaaattttgtcttgtcacttattgttatttctgtcacagtgaccatggtggttctgaatccatttttggtgacaaatatgccgatgaaacctcctggaactttgatgaccaagacactgaatctgtttggggatctaatgcaatgaacaacgtgagttacatagcttctttccagttgtggtttctgagcatgtcaaccccttttctgtttcttatgagctgcattgatacaggagtctgaccatcatggaagtgcacacaactctttctttgggtcagatgacttcggtgtaaatcctgttagggtgggctctccaagtggtgccagtacctatggaaagaagaaaagttcattctttgatgattctgttccaagttcacctgcatacacatctggattctcaccaaaattcagtgaaagccgcgatgatagctcctcatataacttaggaaggttcgattccttcagatcccaggagagcggattcttccctcaggaaagtcgtttttccaggtttgactccataaacaactccaaaggtgagaatgtaactggattcgattcaccgaaaagctcaacaaatttcggtcggtttgattcttttgatgatgccgatccatttggttcaagtggaccctttaaagcatcaggtagcaggtctccccccaaattctgatacaccagggtactatttttagtgaattcatttgtcgatacaaggctgaattcttttgaggaaactccaacgcgttgatgcagtggaacctttttgagtgggaggttggtcattcaccttgtgcgtttttcctgtccattatacggtacaaaggggacaggttttggtatatcctttgtattttgtaaagtacaccgagtttgtttttgttcatagttatcatatctctggaacggctgctgatcatctgctgtttgccatttgtttcttggtttgtaccataccaaatgttacagttggtttactaaactcccaccattttgtaagaaactgaggacgatttagcatgtttgcgatctgtatgtgtaaaatcattttgggatc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0130500, RefSeq:Os03g0130500