Os03g0130800

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Revision as of 12:17, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0130800| Description = Bromodomain containing protein| Version = NM_001055392.1 GI:115450512 GeneID:4331505| Length = 6000 bp| Definition ...")
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Gene Name

Os03g0130800

Description

Bromodomain containing protein

Version

NM_001055392.1 GI:115450512 GeneID:4331505

Length

6000 bp

Definition

Oryza sativa Japonica Group Os03g0130800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:1730505..1736504

Sequence Coding Region

1730557..1730709,1730812..1730899,1730994..1731081,1731192..1731237,1731351..1731449
,1733027..1733095,1734370..1734700,1734787..1734920,1735064..1735915

Expression

GEO Profiles:Os03g0130800

Genome Context

<gbrowseImage1> name=NC_008396:1730505..1736504 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:1730505..1736504 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>ccctgtcagcgctttaatcctttccatcgaagggaacagtacgcggatctgacaagttttgacggatttgacctttttcctcccggattattgtgttgcaagcgctgtccggggttgaaaaagcgccaaaagtcttcgttttttgtgtgccaagatgatgaggcgcccgcggccgccgtggtggtgaaggtggaggtggaggagaagaagaagaaggtctcgtcgaaagcgaccgggaaaggggacgctgcgtcggatggcgggcccactacggggactcccctcccggacaaaaagttgcttctcttcatcctcgacaggctccagaagaaggacacctatggagttttctcggagcccgtcgaccatgaggagcttccagattaccatgagattatcgagcatcctatggacttctcgacgatccgcgagaagctgttgaatgactcgtataccaccctagagcagtttgagaatgatgtgtttctacttacatcaaatgccatgtcctacaattcagacgacacagtctactatcggcaggcacgatctattgaagctctggccaaaaaggatttcgagaacctgaggcaagctagtgagcctgaagaagaacaacaacccaagactgtacccagaagaggcagaccaccaaaatatgcaaagaaaattgagaagactgaaaatgatgtttcaccagatttatccaatgcaaaaacaaaatctgcagaccatgctgaaacaattagaaaaaggttgactggggacagaactcgaaatgcaaatatcacaacaagagactcaccctttcttcaacataatacacctggttcttttgctggtaaaagaacagatagatttggtgattattcagggccttcgaagtacggaaagaagaccaccccgactatttcagatgatgagcgtcgtagtacatacgatcagcaatacttccatagtagtcctctgttttctgcccttggtggtgagaggaaagtacttgtgccggtgggacttcaacagcaacatgcatatgctaggagcttggcgcggtttgctgcaaaatttggtcccgtaggctgggacatagcagcaaagagaatcagacgactactgccttctggaacaaattttggcccaggatgggttgtggatggtgagccacctgagaactctcagtggcctcgagttcccatgctctctgatccatccatccagtctactggtgttccagctagcaacgtaatatccaagaatgatgaatccaatcagaagtctggactgacttcgaacgaggattctggtgaagagcatctagctagaaccgagccagtggcttctacatctgcatgcgttaacacaaactctgtatctgccaccaagctagctaccaagtgtgaaaacggggctaatgtgtcatgtgatggtgtgggtagtactggacagacacctcccttgcagcagcacagccatagtcgagagatccactcaaatatgaatggcttcactgccttgccaaacacaattagtcaatacgcagggcaaggattcttgggacagatgcagttgacacatgctcaagttcttgggatgttttccggagtcaatggcagaacaaatggctttatccatgggcacccactggtggctaatagcattaaagcaccacaaaatggggatgttggaaaggtagccactaatccatcaccagatgcaggtcatgattcagaagctgcattatcacaaaccatgactagttctgctccaagtttaagtgctggtgttcaaccatcaggttccatgccaagcgaaaagttagcaaatccaaaaaagcacccggacttggcattgcagctctga</cdnaseq>

Protein Sequence

<aaseq>PCQRFNPFHRREQYADLTSFDGFDLFPPGLLCCKRCPGLKKRQK SSFFVCQDDEAPAAAVVVKVEVEEKKKKVSSKATGKGDAASDGGPTTGTPLPDKKLLL FILDRLQKKDTYGVFSEPVDHEELPDYHEIIEHPMDFSTIREKLLNDSYTTLEQFEND VFLLTSNAMSYNSDDTVYYRQARSIEALAKKDFENLRQASEPEEEQQPKTVPRRGRPP KYAKKIEKTENDVSPDLSNAKTKSADHAETIRKRLTGDRTRNANITTRDSPFLQHNTP GSFAGKRTDRFGDYSGPSKYGKKTTPTISDDERRSTYDQQYFHSSPLFSALGGERKVL VPVGLQQQHAYARSLARFAAKFGPVGWDIAAKRIRRLLPSGTNFGPGWVVDGEPPENS QWPRVPMLSDPSIQSTGVPASNVISKNDESNQKSGLTSNEDSGEEHLARTEPVASTSA CVNTNSVSATKLATKCENGANVSCDGVGSTGQTPPLQQHSHSREIHSNMNGFTALPNT ISQYAGQGFLGQMQLTHAQVLGMFSGVNGRTNGFIHGHPLVANSIKAPQNGDVGKVAT NPSPDAGHDSEAALSQTMTSSAPSLSAGVQPSGSMPSEKLANPKKHPDLALQL</aaseq>

Gene Sequence

<dnaseqindica>53..205#308..395#490..577#688..733#847..945#2523..2591#3866..4196#4283..4416#4560..5411#ggtttggatttttatttggttttcctatggagtccgggtctagggatcttgaccctgtcagcgctttaatcctttccatcgaagggaacagtacgcggatctgacaagttttgacggatttgacctttttcctcccggattattgtgttgcaagcgctgtccggggttgaaaaagcgccaaaagtcttcgttttttgtgtgccaagtctggagttttgcagcacttcgccctggcagtcgcaaaaggctgacgttcctccgtttccatggcgaattcgactctgacggctgctgttcgatgctgcaggatgatgaggcgcccgcggccgccgtggtggtgaaggtggaggtggaggagaagaagaagaaggtctcgtcgaaagcgaccgggaaaggtgaggcttggagggaagccaagcattagtgttgaagtggttaaagaatttgaaattttctcgggttaactcctccttgcgcttgtgggagcaggggacgctgcgtcggatggcgggcccactacggggactcccctcccggacaaaaagttgcttctcttcatcctcgacaggctccagaagtgagtggcccggccccatcctgatgtagttctcttctccccccaataagagcttgcctctgattgcttcagctatgtatgtgtgtatctcttctttgtactgctcccaggaaggacacctatggagttttctcggagcccgtcgaccatgaggaggtgagcaattcagttcttggtctgctgtgtatttgtgttctgaagtttgcagtgatgatgttgacaactgttttgtgttttgtgtatctgttgttgtgcgtgcttgcatgcagcttccagattaccatgagattatcgagcatcctatggacttctcgacgatccgcgagaagctgttgaatgactcgtataccaccctagagcagtttgaggtatgatgcctgtagtttgagttgctgtctccttgcgtgttgtctgttttattggcttttcattcactgacactacagatgtttgcttctgtctactgttctgtacttcacgttttttctattgctttatatctgctaaggctagttctgttattttcctgtaaaatcctaggtctcgtgtctagcttcacatgtcttctctctcttttgtttgtaccacaagtgtctatgcagttttaagtcaaactagtttatcttcataattcactttcaatgaatttgttgatactggttgttggtattgtttatgaagccactgaagtgttttctgcattttggtaacaatgtcaaggaattcctgatttgagaaagtacatttggtatatccttgttcttacacagggtcaaattattgttttttttatgagttaatgccttcattaatggaaagtgctctctggattggcatgtagaggtcgcatgtgctactttttaatgatcatcgtggactgtagctaagagaaagcccagtaaacttcataatgattcctcctattttagctccaaagttgtatccattcaataactaccagttactttatgctcactatttatagtctttccctgttgatttgcccaacttagtggtggaagcttcgcattcttctcggcaggctagcacatggttcatttgtgtgctaactcaggctaagagcaatcccaaatttgatggttctgtatactcaaattggctgcttaaactaaaaatatcaatatctcaaaacactggtaaaccatagtccatattgaaactgtacttcttggatagattataactctatctatcccttcagaagtgagattcaagttctgcactgtatggtgtttgagtccaattttcaagttctgcatcaactcaaatgatctggggatgtttgtaaatttgtttctttctagtaacggatcttcatgtgaagtggacttcaaatagccttcatgttttctattctggcacaaatgttctccagccactattatattttcttcataatgtctatattttgttttcagccctatttttctcttaaaagttctgcgcttttctcttgataagcgtttcggaggagagagtttgtcatttcaggccattaaaaaaccttttagcgacacagatatggttgctttattattttgtttttggggtttatccgtgtttatataccactgagttctatcaaaggtccataatgtgctgctaacgccaacttattgatctgtcattgtaacgactcggtgggatattttgttcttccattttgtacaatgtattgagttttgaaaaattgctgtgtagctttgcacagcaacattgttaagagttttccacttgtcctgcatatgtttgctgtatggatttttttcttctaaaattagtaaatcatgaagcaaatcataatggagtaagagtaacactttgcttaagtagtttggatcttcgcttaaaatctctttttttttttggctttactagtatgaaccttctcttaatatctaatgtttttttaatgattgtgcagaatgatgtgtttctacttacatcaaatgccatgtcctacaattcagacgacacagtctactatcggcaggtatctattttactaatgctgtaatgcatgtgccttttgcaacaggactatgtgatccattttgtagatataccgccgtactgtttgcacgcattcaatgcttggtttatataggttattcataacccttgcaaatttcttatgcttggtgcagtttcttttcgtgagacttctataaatttgtgcacctgttacacaaatggcacattcttctttttgttcctgttgtgcttttgtagttggtgtttttatttcgtgtgaatatcattgttacactaaggccaacacaagtttttttttaatcaacttcctttggtatttttattttgatactcctttggactcttagaacattggaagtccattggatttgtgttatactgataatttctacaaagccaagacacctaggtcgctatcttccacagtatgtttccccagctggtagggatgaaaacggagcggatagtttccgtccgctcaggacaaaaacggatacggatacctttcggatcggataattctcggatagttcggatacggatacgaatacggatattttctcccggatacgaatacgaatatggtaccagggtttccgtcggatacggataataattcggatatccggtgaacggtgctattcggatatccgcaggacccatgagacataccccatttctttctaactctataaccttcaatatacctttatagattttaatagtagtttatctcttaacactagtcactattaatattatttaaattttaaaaaatatttataaattatacctcattttatataaaatgagctaattatatatgttgatatttgtttccattagaagttgagttggttttcgtgttccgagaaaaaattgtttccgtattcgtgtccgatcatatttgattcttattcgtattcgagataatccgtatttgtttccgtattcgagctatccgtattcgttttcgtatccggtaaaaaatatgaaaacgaatatggtatgagcattatccgtccgtatccgctccgttttcatccctaccagctggaattatactgcagcacaaaagaaatcgatacacttgcataaatacgaggcattgtatgtaggataaattccttctcttatctggaaactgttgaaatccattgacgtgatcctttctgttatcttttgtcttaagactattttattttgcaagttagcctatctttgtggtctttttggcttccaatttcctgagatgttcatttatctacttaggcacgatctattgaagctctggccaaaaaggatttcgagaacctgaggcaagctagtgagcctgaagaagaacaacaacccaagactgtacccagaagaggcagaccaccaaaatatgcaaagaaaattgagaagactgaaaatgatgtttcaccagatttatccaatgcaaaaacaaaatctgcagaccatgctgaaacaattagaaaaaggttgactggggacagaactcgaaatgcaaatatcacaacaagagactcaccctttcttcaacataatacacctggttcttttgctggtaaaagaacagatagatttggtgattattcaggtttgtttttattgctaattgctcgtatctctacagtgctgtacttatggagcttgagcatggcttgatatcgtggtatctttcagggccttcgaagtacggaaagaagaccaccccgactatttcagatgatgagcgtcgtagtacatacgatcagcaatacttccatagtagtcctctgttttctgcccttggtggtgagaggaaagtacttgtgccggtaagcacgttcagaaaattttgtcctgaataatttatgaattaaaagatttataaaccttgccaacttacctactgaacgtttgcaactactacttggtgcattgctatctcaatgctgagttattttaattatggaaacaggtgggacttcaacagcaacatgcatatgctaggagcttggcgcggtttgctgcaaaatttggtcccgtaggctgggacatagcagcaaagagaatcagacgactactgccttctggaacaaattttggcccaggatgggttgtggatggtgagccacctgagaactctcagtggcctcgagttcccatgctctctgatccatccatccagtctactggtgttccagctagcaacgtaatatccaagaatgatgaatccaatcagaagtctggactgacttcgaacgaggattctggtgaagagcatctagctagaaccgagccagtggcttctacatctgcatgcgttaacacaaactctgtatctgccaccaagctagctaccaagtgtgaaaacggggctaatgtgtcatgtgatggtgtgggtagtactggacagacacctcccttgcagcagcacagccatagtcgagagatccactcaaatatgaatggcttcactgccttgccaaacacaattagtcaatacgcagggcaaggattcttgggacagatgcagttgacacatgctcaagttcttgggatgttttccggagtcaatggcagaacaaatggctttatccatgggcacccactggtggctaatagcattaaagcaccacaaaatggggatgttggaaaggtagccactaatccatcaccagatgcaggtcatgattcagaagctgcattatcacaaaccatgactagttctgctccaagtttaagtgctggtgttcaaccatcaggttccatgccaagcgaaaagttagcaaatccaaaaaagcacccggacttggcattgcagctctgaagacaattagccattgacatagttcagcttagcgccgtccttgattggaaacatgattcagaatcccagcttctcgagtccttattctccgcttctgctatgctgatggatattgtagcagcacactgagtggttctgagggagaattaacaatggatttctcgtcgaagaataattcattgtgaggcgaggtcatgggaaggagtaactagagccgatgaatcgtttgactcccagcaaatttgttgtaaaagggtaggtagtctgtatagattctaatcttatttccgatgataatgtttcggatgggcagcatctggcatccaatgtgtaacattatactagtggaggtatacaagcagggagggaggcaagtgcataggtgtgcctttttcctgcgaggattgatccgattccaggttgtatgagactggcggatggacgactgctgcaactccaccccagttgagctgagtagcaagtagcctgagtcaccaaaatcttgctctgagcccctgacatgattctgtgttgacattttcactgacatgattatgtagtgttttaacatttgttgatgttgctcttg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0130800, RefSeq:Os03g0130800