Os03g0136900

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Revision as of 12:18, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0136900| Description = Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)| Version = NM_001055433.1 ...")
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Gene Name

Os03g0136900

Description

Similar to Aconitate hydratase, cytoplasmic (EC 4.2.1.3) (Citrate hydro-lyase) (Aconitase)

Version

NM_001055433.1 GI:115450594 GeneID:4331547

Length

6676 bp

Definition

Oryza sativa Japonica Group Os03g0136900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:2005167..2011842

Sequence Coding Region

2005409..2005477,2005571..2005813,2005895..2005993,2006101..2006580,2006693..2006791
,2006984..2007105,2007183..2007301,2007379..2007446,2007719..2007904
,2008210..2008285,2008364..2008443,2008525..2008581,2008658..2008800
,2008875..2009019,2009388..2009549,2009646..2009831,2010160..2010252
,2010780..2010940,2011327..2011434,2011551..2011815

Expression

GEO Profiles:Os03g0136900

Genome Context

<gbrowseImage1> name=NC_008396:2005167..2011842 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:2005167..2011842 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcctcccctcacgagcgccctcctctcccgctcctcctctacccgcatccccgccgcggcggcggcggcggcggcgatctcgaatcccgcgggcgccgccgcgtcgtcgtcgtcgccgtcaccgccgcctccgagctctcgccccaggccggcgtcccccttcgcgtccggcctcgctggccgcatcttcggcggccgccgcgccgccgcgcgctcctcgtcgtccgccgcggccgtcttcgagcggcgcttcgcctcggcggcggcgaagaactcgtacgatgaaatcctgacgggcctcgcgaagccgggaggcggagcggagttcgggaaatactacagcctgcccgcgctatccgatccgcggatcgagcgactcccttactcgataaggattcttctcgagtcggcaatcagaaactgtgatgagttccaggtcaccgggaaggacgttgagaaaatcctggactgggagaacagcgcaccaaagcaagtcgaaatcccatttaagccagcccgtgtcctcctccaggatttcactggtgttccagcagtggttgatcttgcgtgcatgagggatgctatgagcaaacttggcagtgacccaaacaaaattaatcctctggtacctgtagatcttgttattgatcattcagtacaagttgatgtggcaagatcagaaaatgctgttcaggcaaatatggagctagagttccatcgtaacaaggagaggtttggatttttgaaatggggttcaactgctttccgtaacatgcttgttgttccacctggatctggaattgtgcatcaggttaaccttgaatatctggccagagttgtgtttaacaatggtgggatcctttaccctgatagtgttgttggaacagactcccacacaactatgatagatggtcttggtgttgctggatggggagttggtggtatagaggcagaagctacaatgcttggccagccaatgagcatggtattgccaggagttgtgggcttcaagttaacagggaagctgaggaacggtgttactgctacagatttggttctaacagtaactcaaatgcttaggaaacatggcgttgtcggaaaatttgttgaattttacgggggaggcatgagtgaattatcactggctgatagggctacaattgcaaacatgtcaccagaatatggtgcaactatgggtttcttcccagttgatggaaagacattggactacttgaagctaactggcagaagtgatgacactgtggccatgatagagtcttacctgcgtgccaataagatgttcgtcgactacaaccagcctgaagctgaaagagtgtactcatcttatctggaacttaacttggaggaggtagagccatgcttgtctggaccaaaacggcctcatgaccgagtgactttgaagaacatgaaatcagattggctgtcttgcttggataatgatgtaggcttcaagggttttgctgtccccaaagaatcacagggtaaagttgctgagttctctttccatgggacaccagcaaagctaaagcatggtgatgttgtaattgctgctataaccagttgcaccaacacatcaaatcctaatgtaatgctgggagctgctttagttgccaaaaaggcttgtgaattaggccttgaggtcaagccatggattaagacaagtcttgcacctggttctggagttgtgaagaagtacttggacaagagtggtctgcagaaatatctagaccagcttggcttccatattgtaggctatggttgcacaacctgcataggaaattctggagaacttgatgaaacagtatctgctgcaatttctgacaacgatattgtcgctgctgccgtgttatctggaaacagaaattttgaagggcgtgtgcacgcattaaccagagcaaattatcttgcctctcctccattggttgtggcctatgcccttgctggcacggtcaatattgattttgagaaagaaccaattggcatctcgaaagatgggaaggaggtttacttcagggacatctggccttccactgaagagattgctgaggttgttaaatcaagtgtgctacctgacatgtttaagagcacatacgaggcaataaccaaaggaaatcctatgtggaatgagctgtctgtatcagcaagcactctctacccatgggacccgacatctacttacatccatgagcctccttatttcaaggatatgacaatgtcccctcctggcccacggcctgtgaaggatgcttactgtctcctgaactttggtgacagtatcacaactgatcacatctcacctgccggaagtattcaccctgacagccctgctgctagatatctgaaggagcgtggtgttgaaaggaaggacttcaactcatatggcagtcggcgaggaaatgatgagatcatggctaggggaacttttgccaacattcgccttgtgaacaagttcttgaagggtgaggttggcccaaaaaccatccatattccatcaggggagaagctctctgttttcgacgctgctacgaaatacaagaatgaaggacatgacactattatcctggctggtgctgagtacggtagtggaagctctcgggattgggctgcgaagggtccaatgctacagggagtcaaggctgtgattgctaagagctttgaaaggattcaccgcagcaaccttgctggtatgggtatcattcctctatgcttcaagtcaggggaggacgccgacacccttggattgactggccatgagcgtttcacggttcacctcccggccaatgtaagtgagatcaagcctgggcaagatgttactgtgacgactgataatgggaagtccttcacttgcacacttcgatttgacactgaggtggagcttgcatactacgacaatggtggcattttaccgtatgtcatcagaaagatcgccgagcagtag</cdnaseq>

Protein Sequence

<aaseq>MPPLTSALLSRSSSTRIPAAAAAAAAISNPAGAAASSSSPSPPP PSSRPRPASPFASGLAGRIFGGRRAAARSSSSAAAVFERRFASAAAKNSYDEILTGLA KPGGGAEFGKYYSLPALSDPRIERLPYSIRILLESAIRNCDEFQVTGKDVEKILDWEN SAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMSKLGSDPNKINPLVPVDLVIDH SVQVDVARSENAVQANMELEFHRNKERFGFLKWGSTAFRNMLVVPPGSGIVHQVNLEY LARVVFNNGGILYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEATMLGQPMSMVLPGV VGFKLTGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFYGGGMSELSLADRATIANMS PEYGATMGFFPVDGKTLDYLKLTGRSDDTVAMIESYLRANKMFVDYNQPEAERVYSSY LELNLEEVEPCLSGPKRPHDRVTLKNMKSDWLSCLDNDVGFKGFAVPKESQGKVAEFS FHGTPAKLKHGDVVIAAITSCTNTSNPNVMLGAALVAKKACELGLEVKPWIKTSLAPG SGVVKKYLDKSGLQKYLDQLGFHIVGYGCTTCIGNSGELDETVSAAISDNDIVAAAVL SGNRNFEGRVHALTRANYLASPPLVVAYALAGTVNIDFEKEPIGISKDGKEVYFRDIW PSTEEIAEVVKSSVLPDMFKSTYEAITKGNPMWNELSVSASTLYPWDPTSTYIHEPPY FKDMTMSPPGPRPVKDAYCLLNFGDSITTDHISPAGSIHPDSPAARYLKERGVERKDF NSYGSRRGNDEIMARGTFANIRLVNKFLKGEVGPKTIHIPSGEKLSVFDAATKYKNEG HDTIILAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERIHRSNLAGMGIIPLCFKSG EDADTLGLTGHERFTVHLPANVSEIKPGQDVTVTTDNGKSFTCTLRFDTEVELAYYDN GGILPYVIRKIAEQ</aaseq>

Gene Sequence

<dnaseqindica>6366..6434#6030..6272#5850..5948#5263..5742#5052..5150#4738..4859#4542..4660#4397..4464#3939..4124#3558..3633#3400..3479#3262..3318#3043..3185#2824..2968#2294..2455#2012..2197#1591..1683#903..1063#409..516#28..292#ctcctccgcttcgcagaccagccagccatgcctcccctcacgagcgccctcctctcccgctcctcctctacccgcatccccgccgcggcggcggcggcggcggcgatctcgaatcccgcgggcgccgccgcgtcgtcgtcgtcgccgtcaccgccgcctccgagctctcgccccaggccggcgtcccccttcgcgtccggcctcgctggccgcatcttcggcggccgccgcgccgccgcgcgctcctcgtcgtccgccgcggccgtcttcgagcggcgcttcgcctcggcgggtaagggggggggggggggggctaacgacctggtgggtgggggatgggatgggggctggctgtatgtgattatctctctgatggtttatctgcttttttctgtttgttttgggcagcggcgaagaactcgtacgatgaaatcctgacgggcctcgcgaagccgggaggcggagcggagttcgggaaatactacagcctgcccgcgctatccgatccgcggatcggtgagtgttttgatgccttccagtattgttggacgccccgatccactatttggtgttggatgtgtgtttttttttgtttgattgttagttcgtgatggttgaattgggcattcaacgaggggttgacgctttcatctctttcggtcggtcaatcgtttgtgaagatttgaattggacgaattgtttggttttgttcgagggctctgacctccggttagagcgtaatgtggttgtgaaattggaggtttagatgtgttcagaccaaggaattttgatgcatttgtgctttccttatatagaatttcctttgaaggttttgatctacctctgctgccgaattattagaacaacgatgatttgatccatgttttggtggttttgatcagagcgactcccttactcgataaggattcttctcgagtcggcaatcagaaactgtgatgagttccaggtcaccgggaaggacgttgagaaaatcctggactgggagaacagcgcaccaaagcaagtcgaaatcccatttaagccagcccgtgtcctcctccaggtactaatcctggcaccgtctcatgctttttgatctactttgttcgattgctgttgatagaataattgtgagctggaaaagtttcagtcaatagcctttgatgacaggaatattggaactgtagttcccactttcttacgaacctatcctttcaaggaagtggagttgcacatggcttatcttttgttcgtttttctgatctatgattgctactgtatgtaatgttgtttaatgatagatatggaaacaacaaggcagaaggtgctggtggctgtacaaaattacctgcatctccatattatattcttattctctagacaacaatgaaagtcaatcattctattttagtctggcatgtggctagtgatagctggatatattgcttattatttatatctgatgtcacattttctgatgatgtgtcgatgcaaatgtgttctgctttctcagttgttgtaactgagttgttgaagctaccttgatgatgactcagccagctaaccttttacctgatttacacattacaggatttcactggtgttccagcagtggttgatcttgcgtgcatgagggatgctatgagcaaacttggcagtgacccaaacaaaattaatcctctggtgagtccatagtcaaatgcatacaattacaaaattactaccctctcattgtgcaacttatccatcacccatcggtatgttacccttgatacgtgatttacaataaccaagcttgtttcatttattgttagttgataccctactttggacctttcctgctctattaagctgtgtatttaagcacggttctgatcatctccttacatgtagctatctgtatatacggattatattgggctacatgcatatgtggtataaattggaaaatggtgcttgtgcttttgctgacattactggatgtgcctttctccatttatttcgtttgcaggtacctgtagatcttgttattgatcattcagtacaagttgatgtggcaagatcagaaaatgctgttcaggcaaatatggagctagagttccatcgtaacaaggagaggtttggatttttgaaatggggttcaactgctttccgtaacatgcttgttgttccacctggatctggaattgtgcatcaggtatatcaagaaacaatcattctgatatttttctcaaatatttcacctttgttatataaccacagtaaacactaaccacatgtttttttttgttaggttaaccttgaatatctggccagagttgtgtttaacaatggtgggatcctttaccctgatagtgttgttggaacagactcccacacaactatgatagatggtcttggtgttgctggatggggagttggtggtatagaggcagaagctacaatgcttggccaggtgaaaaaaaattctatggctaataaattttcatctctgatactatggttgcaatgaattacagagtttgtatcaggatgttatttttctctttagcataacaaaagaaaagggtggttgggtttattcgacttctacctctttatcacacaacacacattcagcttgccacacgttttgtgtttggtcatggctcaccaaattcttattctttgattgtaaattttaacgtatgcctgcatcaacatgtcatgcaccaaaaccccaacagtatgtaaataagcttgaaccttggggggtggctgcttctgtccatttgattgcccacttatgcctattttctgttctaaatgcgctactttctgcagccaatgagcatggtattgccaggagttgtgggcttcaagttaacagggaagctgaggaacggtgttactgctacagatttggttctaacagtaactcaaatgcttaggaaacatggcgttgtcggaaaatttgttgaattttacggtattcgccttgcatatctttaatacatgtctctttcttttgatagcaagtctaatgctagttctcaattccagggggaggcatgagtgaattatcactggctgatagggctacaattgcaaacatgtcaccagaatatggtgcaactatgggtttcttcccagttgatggaaagacattggactacttgaagctaactggcagaagtgatgacactgtaagttataggcagttatcttattggatttgatcctaagtgtacttgtatagttctaatatatttgtgaatttaggtggccatgatagagtcttacctgcgtgccaataagatgttcgtcgactacaaccaggtgattttcatattatatctgaagagcatattatttggcaaatactttttttctttattgatgccctttttcttaatgtagcctgaagctgaaagagtgtactcatcttatctggaacttaacttggaggaggtagagccatgcttgtctggaccaaaacggtaatgtacttgattaattcataatcttggcacatgtttagccacattcagttataaactgaagaacccactgcacaggcctcatgaccgagtgactttgaagaacatgaaatcagattggctgtcttgcttggataatgatgtaggcttcaaggtaaagatctactgtacagataactacataactcttcaactggtgttgttgtgatgttctgacttttgttgtttatttgctgatattaaatggcattccaaatcctcatttaagttgcttaatcttggatcacatttgggatatattcatacattatgataaacaaattattttttagtgaaagatgaacaaaatggggccccatatttctatgttctgctattgcacagaatacatctttggtttatacattgtcctgttatcttttccattttcatcctatcctcactacgatcattttgcagggttttgctgtccccaaagaatcacagggtaaagttgctgagttctctttccatgggacaccagcaaagctaaagcatggtgatgttgtaattgctgctataaccagttgcaccaacacatcaaatcctaatgtaatgctgggagctgctttagttgccaaaaaggcttgtgaattaggccttgaggtgaagccctttaccttgtttccagcttgacatccttgtttaatttatctcaagtatgcatatgtgttttaaataaacaaaaaaaatcatctctatcagttcatttatgctcgatatattgtattcctattgagatggatcaatcattgtcccttatcatcctattccattttcctgttattgtcaatgaaatgtaattgcagtgagttattttgttcttcctgagttctgaaaaatgcaagtactactttaatatttatttttatcatcaggtcaagccatggattaagacaagtcttgcacctggttctggagttgtgaagaagtacttggacaagaggtaggtgattgttccttgaattcaaagtttcttgtttttgtcagccttagttattctcactttgtatttccttgcagtggtctgcagaaatatctagaccagcttggcttccatattgtaggctatggttgcacaacctgcataggaaattctggagaacttgatgaaacagtatctgctgcaatttctgacaacggtgagtttgacatcattagctaagaaagtgtgtagagttgagaagctcgctacttacttttctctcttactttttagatattgtcgctgctgccgtgttatctggaaacagaaattttgaagggcgtgtgcacgcattaaccagagcaaattatcttgcctctcctccattggttgtggcctatgcccttgctggcacggtaagataacagattttgtttgacatatgcctgtaatttcaaactaaacagttaaattactgtactattatagcaatatactcaagaatcaaatcaaagatgtgattggtaatatgtaagctagctttttatacatcaatgactgcatgtcaaaagttctgcccattttctaaactgccagatatgccacaggtcaatattgattttgagaaagaaccaattggcatctcgaaagatgggaaggaggtttacttcagggacatctggccttccactgaagagattgctgaggttagcactgcagttttgtccgcttcccttttttcatataaatctatacttgcctattgaaaacatagtggattccataagtgcttcatgctggtgcttttaattttggtaggttgttaaatcaagtgtgctacctgacatgtttaagagcacatacgaggcaataaccaaaggaaatcctatgtggaatgagctgtctgtatcagcaagcactctctacccatgggacccgacatctacttacatccatgagcctccttatttcaaggatatgacaatgtcccctcctggcccacggcctgtgaaggatgcttactgtctcctgaactttggtgacagtatcacaactgatcacatctcacctgccggaagtattcaccctgacagccctgctgctagatatctgaaggagcgtggtgttgaaaggaaggacttcaactcatatggcagtcggcgaggaaatgatgagatcatggctaggggaacttttgccaacattcgccttgtgaacaagttcttgaagggtgaggttggcccaaaaaccatccatattccatcaggggagaagctctctgttttcgacgctgctacggtaatatacttgcacttaaaatccaaatttacatttcatttatgcaaatatatattgtactaatgcattctgaaatttacttatccatttttatgttcttaccacagaaatacaagaatgaaggacatgacactattatcctggctggtgctgagtacggtagtggaagctctcgggattgggctgcgaagggtccaatgctacaggtaacttcgattccatcacaatttcttcagcaaaggccattaatttcttactaatgggtgtacttcgatttggtgatacagggagtcaaggctgtgattgctaagagctttgaaaggattcaccgcagcaaccttgctggtatgggtatcattcctctatgcttcaagtcaggggaggacgccgacacccttggattgactggccatgagcgtttcacggttcacctcccggccaatgtaagtgagatcaagcctgggcaagatgttactgtgacgactgataatgggaagtccttcacttgcacacttcgatttgacactgaggtatgatcattcgtcatcaatgatttcattagagtgttgggtgctgattgtgtatgttgccgatgttgatggatttgttaattttttgtccaggtggagcttgcatactacgacaatggtggcattttaccgtatgtcatcagaaagatcgccgagcagtaggatgaacgctcaagaagattgcgatgaggcgaatcgtaattgttgtaaacagcttgattagcgcaaccccattttttaggaatacctttcaaataaccttctgagatatccgcgaagaactcagaaattttgtgagctactacacttgcagttgtacgctgccacgggaaatgcggcgctaaatgacgctatgtgaacattaacattttcacttaaacacacgttgctaataattttccggc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0136900, RefSeq:Os03g0136900