Os03g0138100

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Revision as of 12:18, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0138100| Description = RNA-binding region RNP-1 (RNA recognition motif) domain containing protein| Version = NM_001055442.1 GI:115450612 Gen...")
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Gene Name

Os03g0138100

Description

RNA-binding region RNP-1 (RNA recognition motif) domain containing protein

Version

NM_001055442.1 GI:115450612 GeneID:4331556

Length

8958 bp

Definition

Oryza sativa Japonica Group Os03g0138100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:2081527..2090484

Sequence Coding Region

2082010..2082730,2082809..2082888,2083147..2083239,2083323..2083430,2083561..2083650
,2083783..2083824,2084065..2084136,2085671..2085679

Expression

GEO Profiles:Os03g0138100

Genome Context

<gbrowseImage1> name=NC_008396:2081527..2090484 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:2081527..2090484 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggttcaacatgttgctcctaagaagccttctgaagagattaaattgatatccgatgttgttgcagattcaccacacaagattttcatcgctgggatttctggagtgatttcatctgagatgctcatggaaattgttagttcatttggtccgttggctgcttaccgctttctttttaatgaataccttggtggggcatgtgcatttcttgagtacattgatcactccattacatcgaaggcatgtgctggcctcaatgggatgaagcttggtggaggcatcctaactgctgttaatgtgttccctaactctaccgagcaggcttttaatgaagcttccccattttatggaattcctgacagtgccaaatcactacttgaagaaccaacaaaagtcctgcagctaaaaaatgtgtttgaccaagaagagtatttgctactctcaaaatctgagctggaggaaatattggaagatgtacgtgtggagtgtgcaaggtttggagctgtgaaatccataaatgtcgtaaagtaccctgctagcagtgacaacactacaggggataccataaccgagtgtgaagatggatccaccaagattgagcccaaagaatatggtggcaatgtcagctgcactgagactggagtggaatgttctgtgttgaatcagagtacagatgttcctgatccttctatttgtgaggtccaggatcccgtagagcttgacacagattctattcccaagggtcgggaccacaaaaatcttgacacacgtggcgagtgtgatgcacctacagcaggagacgagaatactgatcaaggagtggaagctgatcagacagattctacggatgctcaagatgatgctcgtggaactatagagagagggcatgcagatgcagatccggcgtccttggaaacttcttgttccacagcacctggagatggagcggacaaatctggtagggagaacgagcaacaaggtggtgctggtgtgagtgaaagcaacacagagaaggcacctgcagttgatgctagagacaacgctttggcttcaaacaccagtgcgctcgaagctggctgtatacttgtagagttcttgcgcaaagaggctgcatgcattgcagctcattcactacatggacggcgttttggcagcaggattgtctctgcaggatatgctccacatgatctttacttacagaagtatccgaggtga</cdnaseq>

Protein Sequence

<aaseq>MVQHVAPKKPSEEIKLISDVVADSPHKIFIAGISGVISSEMLME IVSSFGPLAAYRFLFNEYLGGACAFLEYIDHSITSKACAGLNGMKLGGGILTAVNVFP NSTEQAFNEASPFYGIPDSAKSLLEEPTKVLQLKNVFDQEEYLLLSKSELEEILEDVR VECARFGAVKSINVVKYPASSDNTTGDTITECEDGSTKIEPKEYGGNVSCTETGVECS VLNQSTDVPDPSICEVQDPVELDTDSIPKGRDHKNLDTRGECDAPTAGDENTDQGVEA DQTDSTDAQDDARGTIERGHADADPASLETSCSTAPGDGADKSGRENEQQGGAGVSES NTEKAPAVDARDNALASNTSALEAGCILVEFLRKEAACIAAHSLHGRRFGSRIVSAGY APHDLYLQKYPR</aaseq>

Gene Sequence

<dnaseqindica>7755..8475#7597..7676#7246..7338#7055..7162#6835..6924#6661..6702#6349..6420#4806..4814#caccacgaggcggaggagcccggagcggagagaggagaagggatcgcgcggcggagccaatcccccgcggccaccacccgcgccgccgccaccgcgccgggatttcagcgtcctgctgccacccgcttccgcctccgctctccccaggtgcttgctactgcccatcgatggttttctcccgctctagtgttccattccggaggttttgatgcgatggtttggggggtcacgggcgtgagctttttgggctgcttgcgtagaactagtcctaggtgctgcacggcgatgggggaaggtggcggtcgtcgggagtggcggaggggcagaaggcgaggaggttgggcaggctggacgggtgggacagctgaggaggcggggagacctgagagctggggtcgccggcgaggagttgttaggcgacggcgtgggcgcccccaaaagttgcgcgtgagagaatgggttaaggaagaggagaaatgcgtgagagaatgagttaaggatgaggataaatgacctaggttagatcgaatttgcgacttctgtacgtgctagtgggaaatttcatcccaaattgaacggcaacaccctaacaccagcccgcttttaggttgttgggtagcttgggtttctcctggaatcagttccaaggttgtctgtttctttgatggcaatcaaactgggccttagcactagaatgacttgctgtttatattgagatgattagggatgcgctgcatttgcttaacttcacaaaaaagttggtagtgttgttgttgagtgctactgctacagcaccgtcatccagcgctatctgcaaaaagaggaacttgtacctgatcattgtctgttctcagtctgatctaacaaggtttaggtggtcaaactggaggtttgctgttcttgatgacatcttgtgttctttgttgggttagttctggtgcaaaacaatttgacatctcgaagtcttcatgtttgttaaaaatgtatgatgcgccgttcaatatagttgtggatgagtatgactcttctttaagacttatgcatacctaaatgcacatgccctttcttgccgttattaattatgaggttgcattacacttgcaccagtgtgtcttttgtgtattactgacaattaccgctggttctctgatgtatccttatggcttaaaatatgttgaatcgttttgacacttatattggtatagttctgcaggaagaagaggcactgctcttgtcatgatcctctggttatgctaactcaaataatttaggacctcattatcttgtccaaattcctggtttcggggcaagatgagtagaagagtacagaacgaaaaggattctaggagaatcactagtgatgggacggctgctcgcacaaggcctttgagcattcaggatatcatgtcgcgtcgtgaaaagaaaaccgcttcagaagctaagaaaaccaaggaagggctcgaagagaacagtaatggtaaatccaatcatctggaatcaggaagagggtccaaaagcagaaaggatgtcagagaaatgcccttggagggctccaaaaaggataatagtgataaaccaggggagggttccaagaaggatgaaatgagacatacgccaagggaagagcgtagaaaggacaacatgagagatatgcaaagagaggtctccaagaaagacaacctgaaagataggccaaaagacatctccaagatagataacttgaaagttaaagtgaaggtcccatcgaaagatgatcaaagagatgcaccaaagaagagctccaagaaagagcggtcctccacaagagatgatagtcatttagttgacaaagacaaaggcaatcataattctcataagcttagcacatacacgagtggtcgagttggcaaaagcagaggtggaaaccatggtgagattacagcaagagacggtgatgcaacaatacaggaatcccaaaaaagacctgggaaaagatggattgatgaaccagttggtaatgatagaatcaaggagaggagtgagaggcgaactgatggaaagagaaatagccgtggctttgatgatgagaagagttctcaggttgatcgacccacactgaagaaacaagatgctgtgcgattacaagatcccagacattttgatagaaaagacgggaggaaagagaatgcaaaactgcaccatgaagagcccaggtcaaaaaggagaaggtcgacaagcagggatcattatcaagaaagacatgacaggtctgtctcaccatcctcaagagaacaaaggcatagctatcgtggacatggccatgattattatcctccatatcactccatggacaaatcaagaaggaagcattttgaaactgacagacatagaacatcttggaatgatggatacagtagtggatcttaccggagatatgaaagtcggcttggtggatattcaccaaggaaaaggaaaacagcaccaaaagatgaacagacaactatcaagactgcttctctggttattcggtctccagaaaagaaatcagccacatgggatcagcttcctgtggcaacagatctatctaattttgttaccactttgcagtcaacggttggtctaaaggattccactgttccagtcaattttaccacatcgaagcaggacccaaacactacaattggaactatattgacagggagtaatttggctgttgattctgtccagctgacacaagcaacccgaccactcaggagattgcacattgaaaatctaccaagtttagccacagaagacatgctgattggctgcttgaatgagttcttgctgtcatctagtgcgagccatatccagaggtccaaacaaccatgcctcagttgtgtggtgagcaaactaccatctcacctttcggtactgctttgcaaatgtttcttaatagcatctagtgatatgccatgctccttcaatgcagataaacaaggacaaacgtcaggcctttgttgaatttcttacaccagaggatgctacagcagctctttcttttgacggacggtcttttggtggatcttctttgaaaattagacgccccaaagaatatgttgaaatggcagtaagattccatcctttctcaccttctcttgccaacagatgattttcagatttgcctgcgtattgctttgatctagatgattccaagtaaaaaaaatctagaaattcttgttgcgacaatctctcagctgttctatttttccattatatttattgaagtcatcagtaatttcagataattgcaactgtacaatacttgtattacatttatggagaggttcttactgattggctttacttctaaaataacgtctggtgggctgatcaaacatcttagcgttactatgatttatcagtatatagctattttgcatagtactattacataaaatttggcgacgtgccatataacatgctcacacgttcccagaatacaagattacccttgtcattccacctatttggtttgtgtaatctttctgtatgtcattggtatattgcatgacctagtcagattggaattgcatcttttgatctgagtctgcctgtaactgattaggttttactcaactttgcttatatcaactctccctccaagccaccttcccttctgactgctagtcttaggttatgaccaaccttccaaatatcttgaagtagtgttaattactttctggacatctggttatcctctagcgtcagccattttacttcttatatatagccgagtgatgctgaatgtaccaataaatggtcttttaatgttaactatgtgcccctagtttataattaatacatgaaggcttgtagcttgttattctcttctttgtttgtaggattcctgaacatttcacatgcttacggcataaatgaaattctatgcagctatgaaaggtttccctttcgatgtggctttacttagaagaaatgattgacaataatatagccatatgtgcatgttggttgtttggcctttcttgaatttgtgcatgtttgtttttaatttttttcccattttattcttggacacttctttttaatggccagatgctaaagttttcagtactacccttgtaataaatggcaatgctaggatttcatggagcagactctcttgattaagctgcttatagcttacaaatgtctactttcaattgtgaaatggtggcagagaaactactgggcctgcaaatattgatttgttccttgctgtacatctgcgcattcaattttggagtgttgtgtccatagactgcattattttatatctaaataattaatggaccaccatgtttaaggcgtttacattttactcacaatctaatactctgtccaagttttagagtgagaagtgctgactaggttggtatcaaatgctatgtttgtttctgcttgaatagggtggtagtaaatgctttgatatatttctttaagaaaaaaatattttagagtagtttcttaatatttatcatggtgcaaacagtattccagagtagttgttctttttttggatttgttcatggcatatatttatatcacccgagaagttctcatctgatggtcatgttggaatcttttaaatagggtattttaattgggtatgtcataattcacgttcaggatggtgaagcaaaggattttttaagcaggattcaaggtgtaatgtcaatattatgtgactgctgcttcttccagaattattggttgctgattacactgctggcagagtccttatggtgctcagttcatggaaaaattaggaagacagcttgcacaacatggttcaagtaaatgtattattagtaaagatttgagcatgctgattgctaagataaccttcctgtcttggttcggaatatccataaatcttgtttcatggcaacaagcacaatgtgatagttgataactgtcaagttagccatattcccattctaatatgagtggacaatagaccaatgtgaatgtggaacgaaaaatctttctactagaattatgatcacacaattttattagtataggaaccattcggtcattttagaagccaaccattcacccttacattggtttcctttgcttgtttctccaccctttttggaacccactaaagatgccaaacattgtttgatgtaagttaacatgacatctagtgtggtttgtgtcaatatgcttgatttgtgtgacacgtatataagtggtttcaggaatcacaaatgatttattgtctctcctcttgtttttagatggcttgttctcaattcttattactcaaaatgcacatgcacttagtctgcttctgatgttcagtattgtaatgagtatattgcttgaagcacattcgcattctgaagcttttttttttagtgcatgtcattctgcgacttaagtggtttggatttcttactaccataaagcaccttaatcaccctttactgtctgtagcactaaggtgcattgatatttactaaatgctaatgctaatgctaatgacaatagaagggaccaaacttgtttaattaactattgtgttatagtgagatttcagtacccttttcttaaagctatagttttcatacattttcaacaattctgtgttaaagataataagttcagcttaatttggtcttgttgaaaaaatcatatgctatcttgagccacaaaggcatagctcattttactggacattttaactatattactaacagaaaaagagcactttcacagaagagatcctgtctgtagtttcattctgtaaactgacaaagtatcgcatgatccatcttttttattcaaccatctttctcaatcagctgtatacggtgacatgccatttttgtgtgaattttcagactgcttactcaatttatatgtttgatttttaagtattttttctgctctcaatttgatttgctacttacaaaactgcctacaaaatcaagaatgcacgctgtttggtggtcgttatttgatgtaaccaagaatattttgctatggcagtataagtctataataccgtgtagcatcaacaaatgacaccaatacagaactcactacccctgagtttaagattgtgataatgccttctgtagtgttacattcagtagaacagagggctaagagccaagtctaactagcgatgaatggttaattgattatatttgctatcaacatagtttgcactcagatcattactctgatgtcctctacatacatacttttttgctgcattttttttctatagcatgattttgcaactttggaacagattatagtttgtaaaatctttcttcctaatgttgtgttatatttttctgttccatgcagcatgttgctcctaagaagccttctgaagagattaaattgatatccgatgttgttgcagattcaccacacaaggtaacttgccagagccagtccattctcatatctatgatatggatgactatatttccagaggcggtgaaaaaatatttgcattttctgattgatagaaattcttacttttctggccaaatatttgatacatggatatcgtacatccgctgttaattgaagttaatataaaacatataggtttgattatctaggaactttagtagctttcatcggatgtctcaacttttttaacttttgcagattttcatcgctgggatttctggagtgatttcatctgagatggtaatacaaaagcatccaccagtatatttgcataacttgttttaatccagtgatcatgctctgcatgtggtattgtggttattagctgttatccggttatccctcagaagcttctacattgtcctctttcagctcatggaaattgttagttcatttggtccgttggctgcttaccgctttctttttaatgaataccttggtggggcatgtgcatttcttgaggtatggaaagctctggtactaaactaaatcgttttttttcaaacatgtcattgatggagaagataaaaaaaaaactagaccagatgaatatattacttaagctgatttcttatcaatttgatgtgtgcagtacattgatcactccattacatcgaaggcatgtgctggcctcaatgggatgaagcttggtggaggcatcctaactgctgttaatgtgttccctaactctaccgagcaggttcaaacattttagattcattcattttctgtcatttccatttcattgaattaagtcccactctgtttcctttgaaatttcaggcttttaatgaagcttccccattttatggaattcctgacagtgccaaatcactacttgaagaaccaacaaaagtcctgcagctaaaaaatgtggtatgtcgtagtgtcaactctgttcataagtttttcctcaagcatctctctatgtatcaaaaccattagcagcgtaacatgtttcctccatgcattatggactgttgttattgtacgtgtgctccaaatgatataggaacccaccattgtatctttgatgcatgccacttttattagtcagtcaacagaactaacaactgtctttcacatttattacgtacaaactcgtgagttgtttacaaacattaaataatgtagtttgaccaagaagagtatttgctactctcaaaatctgagctggaggaaatattggaagatgtacgtgtggagtgtgcaaggtataggtgattctgttgcattcctgttgtattgacttattatggtgctttcagcttacattatgggcaagatgacaggtttggagctgtgaaatccataaatgtcgtaaagtaccctgctagcagtgacaacactacaggggataccataaccgagtgtgaagatggatccaccaagattgagcccaaagaatatggtggcaatgtcagctgcactgagactggagtggaatgttctgtgttgaatcagagtacagatgttcctgatccttctatttgtgaggtccaggatcccgtagagcttgacacagattctattcccaagggtcgggaccacaaaaatcttgacacacgtggcgagtgtgatgcacctacagcaggagacgagaatactgatcaaggagtggaagctgatcagacagattctacggatgctcaagatgatgctcgtggaactatagagagagggcatgcagatgcagatccggcgtccttggaaacttcttgttccacagcacctggagatggagcggacaaatctggtagggagaacgagcaacaaggtggtgctggtgtgagtgaaagcaacacagagaaggcacctgcagttgatgctagagacaacgctttggcttcaaacaccagtgcgctcgaagctggctgtatacttgtagagttcttgcgcaaagaggctgcatgcattgcagctcattcactacatggacggcgttttggcagcaggattgtctctgcaggatatgctccacatgatctttacttacagaagtatccgaggtgatttccagtgctgagattcagatgtactctttttggggggaaagattggagtgtactgatggaagctaaagctttcgttgtcccagtgagttttcatcatggggaaaagattctgatgaactagcctcgtagttttggtcttttggatgcataggctgacaatctcgatgagttttcatcagaattgatgtatttctttatagaagggtaatacaggggtcagtagtcatagactcgatagttgttttttggggcgaaaacaatatggtacacgtgatcattatctgaagttgcagcttgtatttcttttgcaaccagggaaatatgaacattcccttgttcgaatagatcaatattgttcaaggtactctctctcaggtagacaaaaacagcagatgtagcccaggtgttggggtgttggattgtgtattggcagtaacgtatggtgtctttttggatttgagcaattttacggttcttgaag</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0138100, RefSeq:Os03g0138100