Os03g0143700

From RiceWiki
Revision as of 12:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0143700| Description = Conserved hypothetical protein| Version = NM_001055475.1 GI:115450678 GeneID:4331592| Length = 3954 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0143700

Description

Conserved hypothetical protein

Version

NM_001055475.1 GI:115450678 GeneID:4331592

Length

3954 bp

Definition

Oryza sativa Japonica Group Os03g0143700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:2393942..2397895

Sequence Coding Region

2394406..2394463,2394637..2394692,2394801..2396579,2396677..2396830,2397016..2397674

Expression

GEO Profiles:Os03g0143700

Genome Context

<gbrowseImage1> name=NC_008396:2393942..2397895 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:2393942..2397895 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatcaacctgattgatttgagcgccggagccagcgccagggttgccacaagagatggttccccagtgcgagaaactcaatcggaacggaaggagtatgctgatctcaagacagtgactggcagcgtgcgaaggagctcgtcagatagatcgtgtggtagtggtacacccatgaaagtgctgatagcgcaggagatggcgaaggagggggacacaaatcagaagaccactagtgttgtagctaagctgatgggtcttgatgatgatgcagcccttcctaagcctgttcaaccttccaacaacaggaggagatttccagatggccatttgtctgctatgttggcaagagttaataaccaaatgtcgtttgacaaccacacaggcttcgtcgaaaatatggaatataaggatgtctatgaagttggataccagccaccaagctgtgaacatttgagcaatgaattcccacaaagaagaagaccacacgaagatcatgacaagaaaagaatggatcttgtccgccagaagtttgtcgaagcaaagcacctagcgtcacacgagaatcttctccaatcaaaggaattccacgaagctctcgaggttctcaattcaaataaagacttgtttctcaaatttctcgaagaacctaactcgctctttgcgaaacaatccggtgaatttcattctgcaccaacatcaccccagaggaagcgcatcactgtattgaagcctaccagatcagtggagttgaaaggtgaaaaggaaattaaaaggcagcaagaccagacagtcaatggaagtagagtagagagaagcaatactcataggaggtctcattcaggcggcggtcatgccaaagcagaaaggcttccacaacacacacgaatagtcattttaaaacctagcactgctcttacttcaatggagcattttcagaaaaatgggcatgataacctggattattctgaagcccctgttatatcaaggcatttgagtgatgaaataaattggtcggcacaggacatgtgccaccaacatgatgaatcttttcgaggttgcatgcagtcaaatatgttcatcagagatagagtgtactatggatatgctgaagaagagggtagtagcttcagtgactcggaaattggaagtccaacatcacgccattcctgggagtacatataccggtttagcaatccttacttcggctcaactttaagccatgcttcttgttctcctgactcgcttgtaactagggaggctaagaagcatacctctgataggtggccaactgtatcttctaatgagattagccaagaaaaggtgctggtgcggaggagcttgagcacactcggtgaaatgcttgcgatgtctgatatgaagaaaaaaggggctgctgaacaagtggtcactaataccagcaaccagttgtgcagcaatgaaccaagacttgcagtaccatctaaatgttctgttgatggagacggagagagctccctcaggaaaatttcaaggtcaaaatctgttccagtctcatcagcagcctttgacagcctgaggttagatgatggatgctcaaatcctgaacatgaagaacccacatcatcaaaagaggagatcaaacccaagaatggcaagtcatctctcaagggaaagatttcaagtttcttcctgaaacgcaagaaatcaggaaaagataagcttgccccatcccccttgggggccttgggtaccagagttccgttggccagtaatgcatcaatagttagctcagatgtatcacagactgaatggactagcttacaagatgatgttgcttcagaaaatttagagaagtttgatattgcaccaacagtagttccggtcaatgaacctgaagcaacttcttcatctaagcctcccataattactcttgagaaagcactctcgtttgagatccgaaattcccactttgatcagcccagccctacatcagttcttgatgcatcatttgaggatgctagtgagaagtcacccaattcatccgagcacgcaattatcgctaaacaagaacctctatcaagatctcttcctattggatcaatcgcgcggactttatcatgggatgattcttcacaagaggctacattgtgttcagccaaaggagatagccacgaacaagatcaacacgaatttgtcgaaaagattctatcttctgttgggttcgacaacgaaaagaccagcgatattttcgtgcggtggcattcgcatgatttccctctaggcaccggcgtgcttgaccagttcttggaacgcaaggtggaggatgccaagtgcagggagaggcggtcaaaccagaggctcctcatcgattccgtcaatgctgccctactagacatcggccaaagcaagctttggggagcttacccttgcactgacccacaagttaacaatgcacggagagttgccacaggcgaggtgctggttgttgatgaggtatggaggttagtgaaaggctggctctcggacgatgatggcgagaaacatatggtcaatgcggaggacaatgcggggttagtggctgattgggttgtcggcaaggagattcaaggcaggtcatggcccgaagcactgcggttggaggtggatgaaatcagcacggagatatgtggggaggtcctggacgagttggttggggaggcattttcagaactagttgggtgtcattga</cdnaseq>

Protein Sequence

<aaseq>MINLIDLSAGASARVATRDGSPVRETQSERKEYADLKTVTGSVR RSSSDRSCGSGTPMKVLIAQEMAKEGDTNQKTTSVVAKLMGLDDDAALPKPVQPSNNR RRFPDGHLSAMLARVNNQMSFDNHTGFVENMEYKDVYEVGYQPPSCEHLSNEFPQRRR PHEDHDKKRMDLVRQKFVEAKHLASHENLLQSKEFHEALEVLNSNKDLFLKFLEEPNS LFAKQSGEFHSAPTSPQRKRITVLKPTRSVELKGEKEIKRQQDQTVNGSRVERSNTHR RSHSGGGHAKAERLPQHTRIVILKPSTALTSMEHFQKNGHDNLDYSEAPVISRHLSDE INWSAQDMCHQHDESFRGCMQSNMFIRDRVYYGYAEEEGSSFSDSEIGSPTSRHSWEY IYRFSNPYFGSTLSHASCSPDSLVTREAKKHTSDRWPTVSSNEISQEKVLVRRSLSTL GEMLAMSDMKKKGAAEQVVTNTSNQLCSNEPRLAVPSKCSVDGDGESSLRKISRSKSV PVSSAAFDSLRLDDGCSNPEHEEPTSSKEEIKPKNGKSSLKGKISSFFLKRKKSGKDK LAPSPLGALGTRVPLASNASIVSSDVSQTEWTSLQDDVASENLEKFDIAPTVVPVNEP EATSSSKPPIITLEKALSFEIRNSHFDQPSPTSVLDASFEDASEKSPNSSEHAIIAKQ EPLSRSLPIGSIARTLSWDDSSQEATLCSAKGDSHEQDQHEFVEKILSSVGFDNEKTS DIFVRWHSHDFPLGTGVLDQFLERKVEDAKCRERRSNQRLLIDSVNAALLDIGQSKLW GAYPCTDPQVNNARRVATGEVLVVDEVWRLVKGWLSDDDGEKHMVNAEDNAGLVADWV VGKEIQGRSWPEALRLEVDEISTEICGEVLDELVGEAFSELVGCH</aaseq>

Gene Sequence

<dnaseqindica>465..522#696..751#860..2638#2736..2889#3075..3733#gtttgcctccctggggggttgtggtcgctggttcctcgacccggaattggagcgaattggcgcgggaggggaatgggatcttgccaccttggccctccccacctcccgtgcccttttcgggggcgtgtcgccgtgttcacggggtaggagcagagaacaccagcatatggcgtctttgatgtttcgaattctccttttgtctctttagctcaccccatccgcaattcagtgggcgttagctttcaatccgagagaaatttcaaaaaaaaaaaacagagagagagagagagagagagaggaaattctgatgctgcttgccttgttctaaatgtcatggcttcttatctttcctgacttgcttcttctgctgtttctgtatgtcctcaggcactagccatgatctagtggaggcaattttcgttattgcagctgtttggtgggttgaatgaatgaatgaataaagaatgatcaacctgattgatttgagcgccggagccagcgccagggttgccacaagagatggtatgtctatgcaaccaactaacaagttgggaatgatttttttttttgcttgaacacttgcctacatgattagctatgcgatgattttctcgttacgaaaagaatttgttcgtgattcttcagttaggaaggtatgagtcgtcctaattatggatcttcaactctccttgcaggttccccagtgcgagaaactcaatcggaacggaaggagtatgctgatctcaagacagtaagctccaaatttttcctactattcattttaccaaccatgtgcttgtcaggtgtcaactgtcaattgcttgcaatgtgctgatcactgtatgatccatgttggcaggtgactggcagcgtgcgaaggagctcgtcagatagatcgtgtggtagtggtacacccatgaaagtgctgatagcgcaggagatggcgaaggagggggacacaaatcagaagaccactagtgttgtagctaagctgatgggtcttgatgatgatgcagcccttcctaagcctgttcaaccttccaacaacaggaggagatttccagatggccatttgtctgctatgttggcaagagttaataaccaaatgtcgtttgacaaccacacaggcttcgtcgaaaatatggaatataaggatgtctatgaagttggataccagccaccaagctgtgaacatttgagcaatgaattcccacaaagaagaagaccacacgaagatcatgacaagaaaagaatggatcttgtccgccagaagtttgtcgaagcaaagcacctagcgtcacacgagaatcttctccaatcaaaggaattccacgaagctctcgaggttctcaattcaaataaagacttgtttctcaaatttctcgaagaacctaactcgctctttgcgaaacaatccggtgaatttcattctgcaccaacatcaccccagaggaagcgcatcactgtattgaagcctaccagatcagtggagttgaaaggtgaaaaggaaattaaaaggcagcaagaccagacagtcaatggaagtagagtagagagaagcaatactcataggaggtctcattcaggcggcggtcatgccaaagcagaaaggcttccacaacacacacgaatagtcattttaaaacctagcactgctcttacttcaatggagcattttcagaaaaatgggcatgataacctggattattctgaagcccctgttatatcaaggcatttgagtgatgaaataaattggtcggcacaggacatgtgccaccaacatgatgaatcttttcgaggttgcatgcagtcaaatatgttcatcagagatagagtgtactatggatatgctgaagaagagggtagtagcttcagtgactcggaaattggaagtccaacatcacgccattcctgggagtacatataccggtttagcaatccttacttcggctcaactttaagccatgcttcttgttctcctgactcgcttgtaactagggaggctaagaagcatacctctgataggtggccaactgtatcttctaatgagattagccaagaaaaggtgctggtgcggaggagcttgagcacactcggtgaaatgcttgcgatgtctgatatgaagaaaaaaggggctgctgaacaagtggtcactaataccagcaaccagttgtgcagcaatgaaccaagacttgcagtaccatctaaatgttctgttgatggagacggagagagctccctcaggaaaatttcaaggtcaaaatctgttccagtctcatcagcagcctttgacagcctgaggttagatgatggatgctcaaatcctgaacatgaagaacccacatcatcaaaagaggagatcaaacccaagaatggcaagtcatctctcaagggaaagatttcaagtttcttcctgaaacgcaagaaatcaggaaaagataagcttgccccatcccccttgggggccttgggtaccagagttccgttggccagtaatgcatcaatagttagctcagatgtatcacagactgaatggactagcttacaagatgatgttgcttcagaaaatttagagaagtttgatattgcaccaacagtagttccggtcaatgaacctgaagcaacttcttcatctaaggtactttactttctttatttactagcatgcatagttagcttgcttcaatttgaatatggtaaatactagtatgtattaacttggatactttttgcagcctcccataattactcttgagaaagcactctcgtttgagatccgaaattcccactttgatcagcccagccctacatcagttcttgatgcatcatttgaggatgctagtgagaagtcacccaattcatccgagcacgcaattatcgctaaacaaggtaaaccattatgagttatcattgctcttcatgattaacccttgctggtatgactatgagctgttattgctgacacaaaatgaggctgtagcgccaatgatttgtgcttaatcatttgttggctaggccatagtacttattgcgtccttctctagaattaaattcggcatttatcttgctcgcagaacctctatcaagatctcttcctattggatcaatcgcgcggactttatcatgggatgattcttcacaagaggctacattgtgttcagccaaaggagatagccacgaacaagatcaacacgaatttgtcgaaaagattctatcttctgttgggttcgacaacgaaaagaccagcgatattttcgtgcggtggcattcgcatgatttccctctaggcaccggcgtgcttgaccagttcttggaacgcaaggtggaggatgccaagtgcagggagaggcggtcaaaccagaggctcctcatcgattccgtcaatgctgccctactagacatcggccaaagcaagctttggggagcttacccttgcactgacccacaagttaacaatgcacggagagttgccacaggcgaggtgctggttgttgatgaggtatggaggttagtgaaaggctggctctcggacgatgatggcgagaaacatatggtcaatgcggaggacaatgcggggttagtggctgattgggttgtcggcaaggagattcaaggcaggtcatggcccgaagcactgcggttggaggtggatgaaatcagcacggagatatgtggggaggtcctggacgagttggttggggaggcattttcagaactagttgggtgtcattgaagctgaattttattttccctgcctgtggtgtccacctattgcttttatttccaatctggtggagaccaaggctcatgtgcactcccctgaggctcttactcttgtgtatattgccctcattactgctctgtatgctcaagatgttcccactccctctctgttaaatgtcactgccattcatacattctacagcaataacgtttatgaatcgatacagctgc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0143700, RefSeq:Os03g0143700