Os03g0146000

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Revision as of 12:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0146000| Description = Similar to RAB1X| Version = NM_001055489.1 GI:115450706 GeneID:4331607| Length = 5220 bp| Definition = Oryza sativa...")
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Gene Name

Os03g0146000

Description

Similar to RAB1X

Version

NM_001055489.1 GI:115450706 GeneID:4331607

Length

5220 bp

Definition

Oryza sativa Japonica Group Os03g0146000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:2532225..2537444

Sequence Coding Region

2532349..2532487,2533440..2533508,2533859..2533924,2534528..2534649,2535050..2535178
,2537011..2537118

Expression

GEO Profiles:Os03g0146000

Genome Context

<gbrowseImage1> name=NC_008396:2532225..2537444 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:2532225..2537444 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcctcttcaccggcgagcagctacgactgctccttcaagatcctgctcatcggggactcggccgtcggcaagagcagtctgctcgtcagcttcgtctccgcctcccacatcgacgacgaaatcgctcccaccataggggttgactttaaaatcaaatttctcactgtcaatgggaagaaactgaagctaacaatatgggacactgctggccaggaaaggtttaggggaatcacaagttcttactacagaggtgcccatggcatcattctagtgtatgatgtcacaaagagagaaagtttcacaaatttggctgatgtatgggccaaggaaatagaattgcattcgacaaataaagagtgcatcaaaatgcttgtcgggaacaaggtggacaagaatgaggaaaggatggtgacaagggaagaaggtcttgcctttgcccaggaatctggatgtctttttcttgagagcagtgccaaaacaagagaaaatgtggagaaatgctttgaagagcttgcgttaaagattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctctgaaacagaagcacgagaacaaagcaaaaaatggaggatgctgtcagtag</cdnaseq>

Protein Sequence

<aaseq>MASSPASSYDCSFKILLIGDSAVGKSSLLVSFVSASHIDDEIAP TIGVDFKIKFLTVNGKKLKLTIWDTAGQERFRGITSSYYRGAHGIILVYDVTKRESFT NLADVWAKEIELHSTNKECIKMLVGNKVDKNEERMVTREEGLAFAQESGCLFLESSAK TRENVEKCFEELALKILEVPSLLEEGSSVVKRNSLKQKHENKAKNGGCCQ</aaseq>

Gene Sequence

<dnaseqindica>125..263#1216..1284#1635..1700#2304..2425#2826..2954#4787..4894#acaccacgcagacgcgcaccaacccgccggcattcgcgtccggatgctttgctttgcccgccgcgattcgatccacgcctgagcgagcgagcggggcgagcaacgcgcccttccttcccttgccatggcctcttcaccggcgagcagctacgactgctccttcaagatcctgctcatcggggactcggccgtcggcaagagcagtctgctcgtcagcttcgtctccgcctcccacatcgacgacgaaatcgctcccaccataggtgcgtacggatgccttccccccgtcctctctggatctcgttgattcctgcctcctcctcctgtgctcaatatgtccgcttccttgccttgtcccgatcagggaacaagccgacgccggcaattaatttttgtctctattatatactgtattagtttcctgttaatagagacgtaaaatatgtgcgtactcctacctttgttgaaagatgcgatgacgatggtacaattctcggttcggtgtagagggatcaccaaacactggagtaaccaagctgtggacatctctgtggtactgttgtttcacgcaccttgtagcccgtagtacactactactactgcttactgattgttttgcgatctgtctatgtattgatgatctaattgagagtgaccttgcttgcgacaagcctaattccaagggacacgtttggatttgttacgtcgtctaggtgtgaaaccgtcaactaagcagtagcacatatcatgcatgtctgctcctttgtgtgaagttagagaatcagtaaaaaagaagttatcagcggaattagagaatcagtaaaaaagaagtgatcagcggtttacggcaactgaatggatagcactacctcttaattttaacactactacaaaactaactgtgcggaaagcttgatcctgaactctcctcaagatttttatgaattgtaatcgtactaactactatgcatgaattgtcagtagtgaatttgttcaagagtcatgcttgaaaattattcagatctaaattgttaatggggcaaaaccttctatatgtgctcattctggaataataaggtaaaggtttatcacttcagtggcaggaatccagctcatgttcatgtactgtataagtgtgccctctttgttgaactacctataacttcattctatttacttctacgaatttaccttgtttccacattgatttatcaggggttgactttaaaatcaaatttctcactgtcaatgggaagaaactgaagctaacaatatgggacactggtaagttgttttttactccgtacatgtttatttgtgaaaatggtgttctcctgttgatttgtcaatattttttaatgttggaaagcagctgcctttgccttttaccccaaaggcagcttcattgtacccagaaaggggcctatgaaaaaagctgtttccactttccattgcatacgtagaaataagtaatactcctagtacaaagaaaaggctttggtttttctcctgtaaagttcaactgttcttgctgcatgatatttgttggctcaatcctgttcttctgtagcttatgttatttaatgatttcaaaagatttcaattgttcatggacttctttttattgcttgcagctggccaggaaaggtttaggggaatcacaagttcttactacagaggtgcccatggcatcattctaggtaattctattcccaacttatgttcaggaccatcaatatttctaagcatttatcatgcctacagtacatttttataccaatctcactgtcacttagggcatatcaactctgaaagttgctcgtattgcatccatgtatcacattttaggtcacttttatctctgatattgtgtgcatgctccaacgtggtgttgcattgtcagtttgccatcattatttttctgatacaggatctttttaatatagtttaatagtgtgattcctgaacgatctagtgactagaatatcctgccacaaattagttgtatttgctattagacagttgcttcctttccatcaccatggcgcttcattgttttactcagtatttgtgtgctgatatcatgggttttcttttccactgaggtgaaaatttactatgaccatgtatgaacaagtctcaaacaaccctcttttttttatgttgcatctgggaaattgaaaaacttctgttgcaacctaatttgtaggaagaataatatgtttacttgctcttttattctggaaaaaagtgttcctggttaattcatggaagtttaactttctgctgtcttcttctgttagtgtatgatgtcacaaagagagaaagtttcacaaatttggctgatgtatgggccaaggaaatagaattgcattcgacaaataaagagtgcatcaaaatgcttgtcgggaacaaggtggacaaggtaatcattgtttgcctatttaaatcaaattattatttggtgggaaccttgttccatttcagctgctgttgatgcttccccatttctaaaatataagtatttattggttcatcgataacatgttatagcactttctgtaacactgtacagtttatagtatcacttcagcaccttatcatagatagcatttggtgtaattacataagtgaggttgacaatttcagagtacagctattatagttggcatgcgggaagaaaataaattttcaatacacatggcattagattgttaccaaacaaaggaagaggttaatgatcgaggccatttttcttataggagttagcacctaagatgaaatggcagtgcatggttctgatatttgataattctacattgtagaatgaggaaaggatggtgacaagggaagaaggtcttgcctttgcccaggaatctggatgtctttttcttgagagcagtgccaaaacaagagaaaatgtggagaaatgctttgaagagcttgcgttaaaggtatacttgcagaaataatatactaagagcaagtttaatagtatagcccactattagctccaattcatctatagtcaatctaatagccaattcatacaatagttgcttactatactattaatatatggtcccacccgtcatacgcacattgcgtcttggagtccatgctgtagctggctacagtctacagatctgtagcccgctgctcttctctctcatcgtttatctcattaaaatatgtttgtagctggctaatagcctgctattgtacctgctctaagcactgtagtcttaacctctgctttgattatttgaactaatggatacatacaggttgacctgtgaacttatgaaaccaactccatgcagtagcattattgaagttaaagctgaacatatctttagtttgtagcgtatttttgttatgacagtgcgcttcagagttcaggccttgcagtcttctggcacataacattatttttctctgtgcaacctgtcatgcatttttttcttcttaatataagactcttgctgtggtgatatagcttcataggtttctttggtcacatgatcatatttttctaaatgctgtgagtcctgcatatgatgtcttgtgccatttgttctgttggttagtgcagcaatcactgcgtattgaagtcattagctatccatttgtgcggtgtcttttgtgcagcctagcagtgggaagcagtttctggaggattaatgtttttttaagtgattatattttctttctcatcctggcatagaacaagttcaacaagccttcaagcgggggctgtcaacaacccacctgaaatcatcagatcatttggcacatatttttagagggctgtgctgttaggttgccttttctttgagctttagattagtgctgcacttattcatgtcttaggaagtcttttttttttttgttttcatcacagtaccatatgtccatctccacaccattgagtgttgtgcagcaagtgtgtcagtatcttgttatgccattttttgtggcaatgcttcttgccttagttcctggtctcctgcagttttctttgcttttatttctccttgagaacctattgttctctttcttatcctgttgtcactcttttgatggcttatgcctaggagtcttgtgtgtttaaatgttccattattaggttgtatggacatattcatttttttccttcatttctcggaaggttcatttatgaaagaattaatcatggagtatgatttcttctgcttattgaatcatactcatcacctgagcatatggaatatgttcctgtcttattggaagcatgttacctgtggtaccaacaaagagcatgcttgcgccagtttagtgactcttgtgttctgtaatttatttctttttaatgtgatgtttgcacatggtggtgcatgtgcaatgtttaatgtgccacatttttaatgtagctctggcacatgagtgcatgaactatatatatccttgaagcgtacaactagcattccttttctaaaaacagatttgtttaaaataagccaaagtttgaattattcatgaatatttttgcatctttcaccaagcgtaggaggaagagtgttgatgtacaactattttcagctcctgctgaagattctgcttttcactaaaaagttatttatatattctaagtagttttaaacaagattaaaggtcatcttagtaccttttgatgtgacaatgttatcttgataaaattgtgtattgtttacttaattgtaatacaatattgtattgtccttattacgacaatgttgtaaatatcttgtggtgtgtcctatttcagattcttgaggtaccaagtctcttggaggaaggttcttcagttgtcaagaggaactctctgaaacagaagcacgagaacaaagcaaaaaatggaggatgctgtcagtagttccggttgctgtatgcgagctcatgatgcttagacctagcatgttcttgtgtactgatgtaaatgatttgtacctaaatgcttgttggtgtagctgatgcgagttaagaaggaaataaccacacgaagtttttggtgcgaacactgggaattgatttgtacaaaagaaaaagttctcccttctaacttccttcaggtagcagtttggtgtgctgaatgtgccaggatcatgtcgactagtcttgttttctggaaatgtacatgtaatgggatcctgacaatttgtcttgcatatggtggaagtatatatctggtgcataattctg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0146000, RefSeq:Os03g0146000