Os03g0147400

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Revision as of 12:19, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0147400| Description = Citrate transporter family protein| Version = NM_001055497.1 GI:115450722 GeneID:4331617| Length = 9751 bp| Definit...")
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Gene Name

Os03g0147400

Description

Citrate transporter family protein

Version

NM_001055497.1 GI:115450722 GeneID:4331617

Length

9751 bp

Definition

Oryza sativa Japonica Group Os03g0147400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:2630287..2640037

Sequence Coding Region

2630741..2631009,2631120..2631309,2631406..2632620

Expression

GEO Profiles:Os03g0147400

Genome Context

<gbrowseImage1> name=NC_008396:2630287..2640037 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:2630287..2640037 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgttggcagggacctccaaagtagtgctgggatgtgtcgcgtttgggatattctgggtgctggccgtcttccccaccgtcccgttcatgcccgtcggccgtacggccggctccctccttggcgccatgctcatggtcctcttccgtgtcatctcgccggaggacgcctatgccgccatcgacctcccaatcatcggcctcctctttggcaccatggtcgtcagcatcttcctcgagagggctgacatgttcaagtacctcggcaacctgctctcctggaagagcaggggcagcaaggacctgctcttccgcgtctgcatcgtgtccgccattgccagcgcgctcttcaccaatgacacctgctgcgtcgtgctcaccgagttcatcctcaaggttgccaggcagaacaacctgccgccgcagccgttcctcctcgccctcgccaccagctccaacatcggctccgcggcgacgcccatcggcaacccgcagaaccttgtcattgccgtggagagcggcatctcctttggacagttcttgcttggagttttcccggcgatgatcgtcggcgtcctgacaaatgctgccatcctcctctgttacttctggaagtacctttcagtggagaaggatcaggaaggcgggcagccggctgggccggaggtggtcgccgacgacgaggtcacctcacacaggttcacacctgcaagaatgtcacacgtctcatctctgaacccggatgatatggactgcataagtgagccaatcatcaggagcaacagcgtgaggagcaccagtgctaatgagaatctgaggagcaggagtgtgaattcggaggcggacatacagctcgcgatcaagtcgctccgggcatcgagcatgtcgcatgagatggtcgaggtctcaactgtcactgacaggagggatgaaggtgcatcctccaggaagttcacaagaactgctagccagcagaggagtgtgatcatagaggactcgccgccgtctcccgccagcaatggcgacaaggagaaggaagatgaggttgcggagaagagatggagggtgtttgtgtggaagactgctgtttatctcatcactcttggcatgctcattgcacttctcatggggcttaacatgtcatggacagccatcactgcggctcttgttcttctggcgcttgattttactgatgcacaggcttgtctggagaaggtgtcatactcattgctgatcttcttctgcgggatgtttattacggtcgatggcttcaacaaaactggcataccgaacacactttgggagctcgttgaaccgtattcacgaattgacagtgctaagggtgttgctcttcttgctgtggtaattcttatcctctcaaatgtggcctcaaatgttcccacagtactactgctcggcacaagagtggctgcatcagctgctgcaatctctcacgattcagagaggaaggcctggcttatcctagcgtgggtcagcaccgttgccgggaacctcacactactgggctcggctgcgaacctcatcgtctgcgagcaggctagaagagctcagttcttcggctacaacctctccttctggagccacctccggttcggggtgccgtcgaccatcgtcgtcacggcgatcgggctgctcatcgtcaccagttactga</cdnaseq>

Protein Sequence

<aaseq>MALAGTSKVVLGCVAFGIFWVLAVFPTVPFMPVGRTAGSLLGAM LMVLFRVISPEDAYAAIDLPIIGLLFGTMVVSIFLERADMFKYLGNLLSWKSRGSKDL LFRVCIVSAIASALFTNDTCCVVLTEFILKVARQNNLPPQPFLLALATSSNIGSAATP IGNPQNLVIAVESGISFGQFLLGVFPAMIVGVLTNAAILLCYFWKYLSVEKDQEGGQP AGPEVVADDEVTSHRFTPARMSHVSSLNPDDMDCISEPIIRSNSVRSTSANENLRSRS VNSEADIQLAIKSLRASSMSHEMVEVSTVTDRRDEGASSRKFTRTASQQRSVIIEDSP PSPASNGDKEKEDEVAEKRWRVFVWKTAVYLITLGMLIALLMGLNMSWTAITAALVLL ALDFTDAQACLEKVSYSLLIFFCGMFITVDGFNKTGIPNTLWELVEPYSRIDSAKGVA LLAVVILILSNVASNVPTVLLLGTRVAASAAAISHDSERKAWLILAWVSTVAGNLTLL GSAANLIVCEQARRAQFFGYNLSFWSHLRFGVPSTIVVTAIGLLIVTSY</aaseq>

Gene Sequence

<dnaseqindica>9029..9297#8729..8918#7418..8632#agctactctgcttcggtgttggttatatccacgagagtacgagagacgcgcgcgggcgcgagctgaggttgctgctgcagcgcaggcaaagaggggcaagctagcgcaagcgacgctaagcccgcgcgcgcctgcgtgcgtgcgtcgtcggagagcgcgggcgccaaacggcgccgcggcggagtacgtcgagcgtcgcgtggacgttggcagcggcaaggtttcctctggtaagtactatgtactacgaatgtttgtgttggattttatcgcgcggttcggtgctggtttgtttggttgttcatgggcttcacgcacgtacgtacgggtgccccgtgcgcgcatggcagtattggcaatgcaagtacggtggtggtggacgagtcgtgcctaaggtggtgtttggttggagggactaaagtggggctaaactttagtctctctcacaaaaatataagtccctgaaggaactaaatttagttcctagttcccaaacaacctctaagataattgggcgttgatcttgcggtgtgtttcgagctatatcctcgtaatcatcgaccgtgtttatgtcttggtagctctgttgatcgacctttttgattggcatggcgttgcatatataagtacagtacggagtagcagtaaattcggagtagaggcaggtgtcagcactactggtgatacgtacggagtactaagttaagctggctttgtgagcccaatatggtgggaggacggtatgcatcatgcatgtgcacgtatagtggctactggctatcatagcaatacttcaataatttacaaagccacaatgctaatagtgcatcatactcttttcgtcccataatatagtagcatagtatctaaatttgttgtactatgaaatatttcatccagtattatgagacgtaggaagtatgttcatatcgctctatatggtggctaggggcaaagccatgaaaaacttacgcctatgactgagctagtactagggtcttaggctagctaagtttaaaactgttaaacagagtttggatgttgctatttccttgtttatcataagaatgtttttaaactgttaaacgatacctttttagttttctaaatcaaataaatccatatttcaagtttataataattaaaattctattaattatatagtaatgacttgttttgctttttttttaaaaaaaatctaaatcaaacttcacttttaagctcaatgttagtaataactatttttagaagagtagtgtttttatataatttacgtgaaattatggggttcaagccataaccatcctacgcctaacttcgcctatgttgctattcacaacataacacaagagtttcttttcatttctttaaaagagatggaaagaaaaaagagaagcattatataaccttgtcaatggcgggtcacgaaagagcacgtgtggttcataataacaaaatagattgagtgtcaatgtttgagtacttttgtaggttttaagttagaggcggtttgttcactcttatgtgaaaatatgttatgactctgtgcaaagatattttttgtagttgtttttttttaaaaaaagatgatttctgtagccgtaattattgcattttaaaaattgacctactgtcccttcaaccaattaaggcttcatttgtcgttgtggtgaactacgatgatttcgtttatgctacttttagacaattctgcgttggaccaactgttttgccagcgtccactataaatagaaaccgtttgtatgataaatttaattacagtaataatactattgtacaacggtatagcagtacttgcggttcactgtacagtacttgccgatcgtattcacgtgttgacaagtagatctttgtattattgaagagaatacacgcatgtccatatatatatagcaccatcacaaggctgcatatgcatgctgacatcaatggtcgatggaccttttttgaaacaaaggatttgtgaagaagttttataggattttaatcctatatggatttttttttctatttagccgtttgaaacaaagtatcgaaacttctcaaatcttgtaaaatttcttaggaagggttcaatgcacggagattttggaggggaaaaaaaggtgttaacaagagctccaatctattagaaaatttcctttgaatctctctctccctcattcaattctatattttttttctacggtctatccaaacaatatacttatgttttttctatgttttgtatccactttttcatgcttttatatcaaaattctgtgtttattattcatgtgtttcaaaggggctggaaagtgcttattgttcatgcatgaacaacccaacacatggggtacaaaatatgtgaatgtagggttacagggcttattcaataagacttgagtagtagtatgtcataaaactcaacataattaatttaggtaataggatatttgtgcacgtgcatcttccgtgcaatcgaaaaaagttattaaaaaaccacatagtaacacaggccaaactaaattttgtaaacccatatgacacggttaatgagaaagagacatatagttaggtgccgatcttttgggaccaaaaccaattaaaaccagtgatttggccatcaaaaagggttttagcaaacgtgtcaggtcaatttgcgggccaagaaagaaagaaaaaactaacacctaccaaataaaccccagatttcgttgcccaccaccaagattgacatggggcttccaagttccatcaggcaccaaccaaacaaaacccaaaatttttcgaggttttcagtacacgactttgtcatttttgtcaattgccacatgcttggctgacagcgtcacacgcagatgcttggcactggaagaagttgacaaaacgagccttttcttttttttttctttgctgtgtttttctgaaactgcatcgatcaactttttatctggcctgattagttcttagcacagcgacggtgaaagaaaatcaaagtactagtaaagacgatcttatctccccccacacacgggtgattatttgtcaatgctggccaataaagctggtcgcttcatgtgggcacaaaagtgcttctcactcttttcatctctccctataattgcacggattgttgtgggtttggcattcgaggtttggttggaaaggttcgatgtgtttgctatcgcatggggaattagacttagttcttttgagtaactcaaaacgataattttctcattttctgttaatatttttattaaacggttaaacagtgtgtttatataatttttttagttaatacgtaattaattatgggctaatgtttcacccctccgagccacaaactgcatatttgagctgggccttagctagagattggaggagggggaaaaatggatgttgtcaaatagtaggtgaattgtcacattctcacgtaattaagcccatgaaacatcaatcacatgacttgtcttcctcttgctgggagttcatcatgcagccaatttaatcctggcaattgacaagctgacggcctcagatccatggctggttggtcaggccctgttgctttacagagcagagttcccttcgtggagagcacttaagtatacgtactgggcgaagcactttcaccttgcaaaccagattcatcattccactggctatgcatgcttgtgctcttatctgctctgtataatagtacatagactactcaattattgatccgtcggtagatgatatcctactctaattggccgtgataatggagaccgagtaatctttttggttttggtctgatctgttgctgtccacaagttgatgggtttgtggttcagagctgtagccattatgtagtattaggagtgagacagaggggtgagcactggagcaggcacatctgagatggttctgtggtggccggggttgttcttgtgccctaaggatcctagaaatatctactaattgaaaccaccataaaaccatgtttagagatatgtaggggaggtgttgttatacaaacatggagacattttcaaaacctagcttgtttggaagatataaaattcattaacaggaacatttcaaatcgaaacttaatttcatggatttaccttgtttcattccaaactattcttaatgaaatttgatctgcctttctttggccgacccaggaaaaaaaacccgggtcattctgttctctgttctctgtgtgtgtgaatttcttatcttccaaactaaggccctgtttgtttcagcttaaaattattttaatttagattattgagtcaaattactataagctgaattataataagccgatacagaataagttgtgagctgtttgtttccctagattatataagttgtttgttaggtgttagccatccaataatctaaaaaagcacctttaaagtggattagattatagtaatctggcttatagattgtaataatctatcataataagctatatgtttgtttgaacttattcctaataattcagattataataatcctaagctgaatcatacatggcctaaatcgagactgatcttagttttactacatggctaaatttaattcccttaatacaaatattcaaactattttatcagaaaataattaatgcaaattatgaaaataatctattttatcagaaaataattaaaacaatcggtaactaaacaaaatttcccataagaccaggctcgtcttaattttctctctagctgggctttgggctagcatgaagtccatctataataataatggatctaacgcgcttacacccaaagtagaggtggttcgtctttgttagccttcagctcataattatctactaaaatttgaattttcaaatttaaattagagttggtttttaggtttttcaccttagtttattttttacattgaattttgaaccgcgaatacaaatttatctataaattattcctttttttatacgtcgttttatggcttatcagttttaggccaaacgatcacctgtgtttgtggtactacttcgtaccattgccactccactccaaactccagtgtcccaaagtccagagtagtcgcgctcacgcggctgtgataagttgtgatgcaaattgaccaccaaaacgtcgttgcatacgtacaatcattggtagcgtggatggaagcaggagaacccacaggatgcccattattcgctagaaatacggcaaaatcatgcgacaatgacatgctaatcttgtcgatcgcttcgtcatccggacgcgtttttggcttcaaagatcgtcgagatttcttgtatcggaagaaacggcgcgatctctccgctggccgccacacacgtcccacgcgcaatccaaatcaacagcaaaccaagcatgcaaatccaaatcgttggcaacttcgcgaatcataggaggagagttcgtatgggaaaactgctagccccacaccccatgtgtaccaaccaatatagtccttactttataaattctccattttctttcataaatatataaagcaaggagataataaatgtatagaaaaaactatatatacagagtaatcatatatacattcccatataaaacggtattccacaatcataacatataattttgcgatcggcatatatccgtcatatgatatcatagtacctatgtctcagaataaatgaaatattaggatttaaatttgtctctaaataagtacttctacattactaatagagtactagttgtcacttcgatgaatcctatctcattcaaattttcctcattttacccctaactactctctcacttacattcacatgccatataataattctcatataggtcattttatttgtcttaatttgctccataataacctctataactgaaaatgttattttggacaaagataatactatctttgattagttttggatctggacaaagcgtcacatcttcatatagattaaactttttttagacggaaggatcctaataaggattggatgcttttctaggtggtgtcacatcttcctataaatttgtttttttatagagatcttaagaaggattaaatgtgacgtagtctagtacaacgaatttaaatatttatttttttacaaagagaatatccaaattatagtcaagaactagtttattttgtgatgaagtattcaagtagcactataccaccgtcccaaatatgcggatcacaaaattatgaaaacggactcacacaatgggagctccaccctttgggttcacatgataaatcggcccttcctaggaccctcaacggtgggacccaccagtcacctcaaatcatccatgaaagcagtggacgctctctttatttagctgccccccctccattccttccttcctccacctccgctttattctcgccaccaccaccactccgccgctgccgcctgcttttgcttctttccacttctgacttctccaagtccaaactccaaagttctcatcgttgcgcgtggcactgtggactctccactctccacgcccctactccgaggtgagcaacccaaaaccgaagttcatttcttctcttttcgtccagagaccaatcatagtcgtagctcacgaaacaatcgaaaaaaatatcttgttcctggggttctttggcaccactgcatgcacgggtttgtgctggatctttcgtttctttttagtcggtaagccaagctccaatccattcgatctgatcaactgcaagaagcgtagaatagggggaacaaaaaatctggatttttagccataactacagtaatttatctgaggaaatctcggtagctctattcatttagtttggtgaagtgtgcgaaggatttttgtattgataagggcttctgttttctcgcttgaatttgtttgcaggatacaccgtgagtaggcgtggtggtgcttgatctcaaatatcaaatatgtgtcctcccgttttcgtgcagtcgatctaacaccgttgtttcttgctaattcgttttcgttcccccggatcaaagaaactttattttacaacaacaacaacaacaacaaaaggatctttacatttccttttttaaatgatcttattaccttctctctcttatttttacagattttagaattaacctgtagcctctgtttgtttgtctgctccaatttctgcaggttcttgagtttgagttgggcaaggaggttgtgaacgtagcctgaacctgacctgagattgtgaacgtaattttggggggaaaggttgttctgtactgtctcttcaatctgtgagttcgtgacaggttcttgcaaaaaccaaaacatcatcagtgaaaaattgttcgtagcattttagctctagtatagatcgatcaatcgatcgttcgttcgttcgatcgttcgaggacgagagatttgctaacatggcgttggcagggacctccaaagtagtgctgggatgtgtcgcgtttgggatattctgggtgctggccgtcttccccaccgtcccgttcatgcccgtcggccgtacggccggctccctccttggcgccatgctcatggtcctcttccgtgtcatctcgccggaggacgcctatgccgccatcgacctcccaatcatcggcctcctctttggcaccatggtcgtcagcatcttcctcgagagggctgacatgttcaagtacctcggcaacctgctctcctggaagagcaggggcagcaaggacctgctcttccgcgtctgcatcgtgtccgccattgccagcgcgctcttcaccaatgacacctgctgcgtcgtgctcaccgagttcatcctcaaggttgccaggcagaacaacctgccgccgcagccgttcctcctcgccctcgccaccagctccaacatcggctccgcggcgacgcccatcggcaacccgcagaaccttgtcattgccgtggagagcggcatctcctttggacagttcttgcttggagttttcccggcgatgatcgtcggcgtcctgacaaatgctgccatcctcctctgttacttctggaagtacctttcagtggagaaggatcaggaaggcgggcagccggctgggccggaggtggtcgccgacgacgaggtcacctcacacaggttcacacctgcaagaatgtcacacgtctcatctctgaacccggatgatatggactgcataagtgagccaatcatcaggagcaacagcgtgaggagcaccagtgctaatgagaatctgaggagcaggagtgtgaattcggaggcggacatacagctcgcgatcaagtcgctccgggcatcgagcatgtcgcatgagatggtcgaggtctcaactgtcactgacaggagggatgaaggtgcatcctccaggaagttcacaagaactgctagccagcagaggagtgtgatcatagaggactcgccgccgtctcccgccagcaatggcgacaaggagaaggaagatgaggttgcggagaagagatggagggtgtttgtgtggaagactgctgtttatctcatcactcttggcatgctcattgcacttctcatggggcttaacatgtcatggacagccatcactgcggctcttgttcttctggcgcttgattttactgatgcacaggcttgtctggagaaggtatgattttacttactgatgcctgaatcaacaatttatctgaatcatgttcattgggacaattaaatttcatgtgtttgccatgtctgatgataggtgtcatactcattgctgatcttcttctgcgggatgtttattacggtcgatggcttcaacaaaactggcataccgaacacactttgggagctcgttgaaccgtattcacgaattgacagtgctaagggtgttgctcttcttgctgtggtaattcttatcctctcaaatgtggcctcaaatgttcccacaggtaaatcttcagaacaatattcttttggatactgactgtcaaagttatcccaaagttctgaacaattcttttgtggcacttttataacatttctgaactttgtctttcagtactactgctcggcacaagagtggctgcatcagctgctgcaatctctcacgattcagagaggaaggcctggcttatcctagcgtgggtcagcaccgttgccgggaacctcacactactgggctcggctgcgaacctcatcgtctgcgagcaggctagaagagctcagttcttcggctacaacctctccttctggagccacctccggttcggggtgccgtcgaccatcgtcgtcacggcgatcgggctgctcatcgtcaccagttactgaagaagaagaagaagaagaagaagctgacagcagcataaggtagcgtacaagaaggagatagatgaacgaaccctttggatcaataagagagagtacatgtaaaatttctaaaataggcttgtcctgtaaaactcgtgtgtgttttgtgtgtatctatgccagctgctgcgtctgtgcccttgctcttttgttgtcgctaagcagacggtgattgagaaggatgcagatgtagcaggctaagcaacctgcattttcagtgtttttcttcagagtcggaagttgcaaatagggcgagtaaatgaagaatgctatgacaatctgattttagtttttatatttgtttcctactcaattaatttgtagccgcggtagaattttggaaatggtgtttgtacaactgcacatgcgcatggttactactagatcaaattgttttttccgcgggaaaaaggcc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0147400, RefSeq:Os03g0147400