Os03g0153000

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Revision as of 12:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0153000| Description = Nucleotide-binding, alpha-beta plait domain containing protein| Version = NM_001186342.1 GI:297721814 GeneID:9270364|...")
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Gene Name

Os03g0153000

Description

Nucleotide-binding, alpha-beta plait domain containing protein

Version

NM_001186342.1 GI:297721814 GeneID:9270364

Length

8481 bp

Definition

Oryza sativa Japonica Group Os03g0153000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:2901347..2909827

Sequence Coding Region

2905681..2905992

Expression

GEO Profiles:Os03g0153000

Genome Context

<gbrowseImage1> name=NC_008396:2901347..2909827 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:2901347..2909827 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>tatttattatgcttttgcgtttccaggtacatcgaattctatgatgttatgtctgtaccaatggcaatagctctttctggccagctgcttcttggtcaacaggtgatggttaagccatcagaggctgaaaagaatttagttcagtcaaatgcttcttcaagtggagcagcttcaggtggggcaagaaagttgtatgttggaaatcttcactcaaatattactgaagatcaattgagacaggtgatgccgacaaattgttttttagatgagttggctgtgcttttggaagaaaatttcccttggagttcataa</cdnaseq>

Protein Sequence

<aaseq>YLLCFCVSRYIEFYDVMSVPMAIALSGQLLLGQQVMVKPSEAEK NLVQSNASSSGAASGGARKLYVGNLHSNITEDQLRQVMPTNCFLDELAVLLEENFPWS S</aaseq>

Gene Sequence

<dnaseqindica>3836..4147#aattttctctttcctcatctagggtttccgcgtcgccgcggccgcgagtcgccatggatttcgacgagtacgactacttggagaagacggtggagggctccggggcgccgtccaacggcgccgccgcgcccagatccgaggagaaggagcgaagctctcgccgccggagcggcggcggcggcggcggcgacgaagagcgcgacgatggcgagcgcagatccaagcgctctcgctcggaggagaaccgcgaccgcgacaaggacaaggaccgggaccggcaccgcgaccgcgacaaggaccgggaccggcaccgcagcagccgggagcgtcgcgaccgcgaccgcgaccgagaccgggacgagaaggatagggagaaggagagggacaaggacaaggagaggagaagccgggaccgcgagaaggagaaggagaaggagaaggagagggagagggagagggagaaggatagagagcggaggagccggagccggtccgagcgccgccgcgacgacgaagaacgtgaccgcgaacgctaccgcgagcgagactaccgtgaccgcgatgtcaggtgccgattcatgaccttacccacctgtattggtgccgctgtgttatgaactgagtggtcttaacggacttgccgattgcttgattccaaaaagctgccatccataatctcgttttcaccacgtttgatgcgcttaggcatcgttgtctccaacaaaatcaattttatttttctacacttggtcatgatatattgtaatattcgcggaggattgcatgggatggggatagcaacatagtttgagtgtaatgagtatattattatggggtgcattgggacttttcttcttatttgtacaaatgcagcatcaatttgtaaattgcgtgtaatagttctgctttcatcgtttagcataatttatagcagatgatttgataactcttctatcagagtattcctattgcttcctataattctactgctattaacagttttttgtattatatacctcgacttcttgtaaattcctacaatttgaacattagtatgggtacctgcagattcaatttgctagagccatcttctgtggtcttgatgttgagcctgacctaggatatcaggtgatttttttttaatactactattattagataggagttagtgttctatgttagggttactatgatagggaaattcaagatggatgatacaatttatgcttttgagtggtggtctgagagcaatgatggtgccatccacgcataaagttttgttgcatccagaacatggagctgaactgtacttcttgtgttgcagaaatgctggtgagcggtgttttgggcttcttcactgaagcattgtgtcttattgttaaggggactcagtattcggcccgctgcacaaacaacccttattgctttttacccttttcaggagatgtcaactttgagttgtcagagttaagagttgtgcgaaacctggttagatgatggttcagagcccactcaccgttctaaaccgcatgcatccatgcagaagggggggggggagcagctgcatgcatgcatgtgcaacactgggtcaaatggtttagtaaaaccgtttttgttcacccccaatcatggtgatgcatgtctatgccttacaacaaagggctttttacactacattttttgcttatctccaaggcatgtcttgttacgatgtgacttgatagaatgttgatgggccacatattctaatgaaatgtctaactcgattagtcagttatgatctataatgatggctgaactatgctcagtgaacgttgaaagttattcttcctggacccctagatctgacacattcatttcttcaattattattattggataacttgttgggtagttaagcgttgtgatcttaacaaatcttgttatttaggtgagaccgttagaggtagggagagaggattgagtggtgatataaatttatattagtatggatggacactaacatgtagggaatgattgatattgagaaactgaggtagtattctttttatgaggaactccattactgttggagctgatgattaatgtgggcttgtattatatatatatttttctatattttcgtatcaatgcttatgacagttttgcttattgtctgtgcagacgtaggaaagaagaggctggagagcctgaagcagatccagaacgagatcaaaggacagtatttgcctaccaggtgcattttagtgtaacatttgaatttcactttgtgaccaggaaaatgctgaagccttttctatttgaaactaatgtttgtgagcataatcacagttatctctgaaggcggatgaaagagacgtgtacgaattcttttcaagggctgggaaggtgatcctcactttgaatttgcttgtatcctctttagtagtaaaatattttatgattagcagatgaacatttacggcctataattgtggtttggtgggaaaaaaagttcttctgatggttgctgcgcatttgttcagtctcttgtcattgcatcaaatcaataactgtgctgacattgattactttttgtaggtccgggatgttcgcctcatcatggaccgaaactcgcgccgttctaaaggagttgggtgagtttttatagtgaattctgtgcaacatatcagatcgttgttttatttgttacctgttttttttccttgagttgctaaaagaggggttttattttcttagtggcttggaatatctagcagtttgcttataatagccaaatatatctattgtttacacatttgatgggagggaggcagggtgttacttgtgtttcctgttttagaatctccaaaagatctgattagactttggtgttctactgattgttaccttggtcgtttggtgcctcccatggattcataacctgagatctagagagggagggtggggcttgattttaggttttacagtatcggaatgaactcgttagtttgtgctcataatgcttctggttttgtgtccaagtggcaatattgacttactgagaatgagggagatggacccactgttttggggttttagtctgtgttgctaagccatttgtttgtagcaagcaaatagcaaatgcctcctagctttctgtaaagctgctccagttttgtgctcatgtggcaaatattgtgatttaggttgttggattcaatgttaggcatgtttgcacgtgagtgtaggtgtgctgtaaggtccattgttggtgggcaacaagggaaggagatgaactgaatcagaaggtatgaaccagagtggagtagatgtctcacaagaggctgcaaagagatcaaatgtgtgagaattgttttttgggtggggggtgattggtagggtatttcaaatgttaatgaataccgaccatatttgtcaatatttttctggttgctgttatgattacacaagcatttttaaactgtagctacatctacgatttattatgggggaatatattcaccgatttttcatactcggcaggaatgtttataatttggtgtatctactgggataatcagctacttatgactaagatggaatacaagatctttttgggggaagtaagcagcgtggaacatcaaacatagcaattccacattattggatgccatttctgcgcattttcatatgattttggttggaggaatgtgcaattagtttgtgctgggaaaaattaattctaaacctgtttgaaaatgtttgatatgcaagattttatgtgaataactgaatatcttttcaaaagattgaacgaatgcggcctaattctatcggcgacatgatatcctgatatttattatgcttttgcgtttccaggtacatcgaattctatgatgttatgtctgtaccaatggcaatagctctttctggccagctgcttcttggtcaacaggtgatggttaagccatcagaggctgaaaagaatttagttcagtcaaatgcttcttcaagtggagcagcttcaggtggggcaagaaagttgtatgttggaaatcttcactcaaatattactgaagatcaattgagacaggtgatgccgacaaattgttttttagatgagttggctgtgcttttggaagaaaatttcccttggagttcataatggaaaacatattacttttatggggtagaagaattactatggcatccttgttatgcatatatagagtttaatgaattctctttaccaggtcttcgaaccgtttggtcaggtggagcttgtccaattgccactagatccacttactgggttatgtaaaggttttggttttgttcaggcaagtgtttgcttattaagcaattcttttgtttttgtggagagttctgtgtggctgacttctgtttcatcatgtagtttgcacgccttgaagatgcaaaggctgctcagagtttaaatgggcaacttgatatagctggacgtgtgattaaggcaagtgttttcttcagatttactagaatacatgttgttttcaagctatacatctcaaatataagggttctgcctgacactatgctaaactgctgtaaccaggtttctgctgtgacagaccaagcaggagttcaagtcagtggagtaactactggagatttggatgatgatgaaggtggaggtttggtgggtgccatttctggagacacatcgagaactggaaattcacttatcatatttgatatatatatcctcattttcttttaagtacaattacttgggacatagcatgcttttgcttgcacctcgcctcaatctttttagagaagattttactccctccatcccaaattgatcaccatatatgcatatgcaccaaaaccaatgataatttaattcacatcaatcaagacatcatgcacacattctcccacagcgcatgcattgattaaaacaccatgccaattacacccttagcatgcacacattctcccttgctgcattaattgtattccgatgaaatccatgttcatgtggttatatgatgatcaatttgggaaattttgaatttcattatatgatgatcaatttgggaaggagggagtaatgtgcaagaactttaccatatgatggtttagtatacactgagcactctgcatacctagcatatctactatagcaagcctttattgcatggtcatttgttcattcttagttggttaatgtttgaggctgtttttaaatgccacatacttatgcatattgcaacagtatctcaattgtgtctgtgatgactttgctgaatgctgatgtatgcaggcactgaatgctagttcaagagctcttttgatgcagaaattagaccgtagcggcgttaccaccaggtatatatatgtgagcttaatgggttaaactatctttttggtgccctcgtggccatgtcaatctaactacatcagtcatattcaatcttacatataacctttgtcccataaatactccctctgttttttaatagatgacaccgttgacttttggcatgatgtttggccatgttgaaaaaaattatataaaaatgtcatttattttgttgtgacatgttttatcattaaagaaatctttaagtatgacttataggcatatttacactaattataccaaaagtcaacagggtcatctattaaaacagaggtagtataaataggaagaaaaaaaagaccatgatacccctctttaaatgtggtatggacgggaggttggttaggggttagctcgtttgatggcacaagtagtactatagaatcccttatattttgggatggaggtagtagcttgtttaatagtgtgttgctcagtcaaccaggtaatttctgtaatttgttgatggtactgcagagccttaagttcatatttagaatactgggatgtcaaatgtccagaacgtcaattatcttgcttgttagagttgctgtcatttgtatcaaaatcattcgttattgacctttactatattatcgtcaggattcatccaccactacatcaacactgtttccatatgtatatagcttgtcaaggtcattctccaaggacctcttccaattctttggtgtacatcgctattgttaatattttgtttactccatttctaacatcaaatgtcaatcgcattgactactacaaatttcaagagagtgaaccatgattgagaaatgccgagaacatgccacagtaccttattattcttatggtatcatcaagttatcgtgacaagacatgttagccataaccttttaatttttcactgcatttccaattcaaaaaatgtgcgtggcatatattaactacaaatagttggtactggtttgaacacttggccttcctctgaattttttaccttccttttgtctgtctgcagtttgactgctgggatagccggtactggtttgaacacttctgttggattaccacctgcatcagttcttggtgctcctccagtcgctgcatctgtactgcctacagtgcctggtcttggttcagttcctggggtgtctcttccaattactacccaagccattgagacagccccacccagtgaatgcctattgcttaaaaatatgtttgatccatccgtggaggtttgttcttactactgcattctttttttttttgggttcaccaacagtccataccttttttaaaaaaaatctttactggtctgtatcctttctgtttggttgattaaaaactaattgaaacttactttattgcagacggaccctgattttgatttggatatcaaagatgatgtccaagaagaatgctccaagtttggccaagtaaaacacatttttgtggacaagtaagtttgttcaacactaattaccagtcaacaaatctgtaacagcttgcatacggcattattgtaaccatctacagcttcccagtacataagtcccaacacaatctagtaatctagtaaaatatagtattcaatagttaccagcatgtacttgtagagtgttaggggaataattctctattctctgctaacatatccaaaggctctgtttactgtgcttttatctttcaattttcttgtgtactgcaacttcagaaaggtgcagtgtacttttgctcctcgtactgcagtgcaattattgccgtgtgcaaacctgatttaccttgaaaagcctgccaattttacaaggatagcctaaggccatgtacaacgtgtgaccctggcctgtggtctcaaacctccacatcggacgggcgcatccatgtcagtggggaccgtggctctgcaggccgattccgcgcttgcagaggaaccggtcgaagcgccgtgcctgggctcgggagccgcgaagccacagcccaaggccacgcgttggcggagccggagccccgtgcttcgcctcgtccggtcggtcgccgtggtagtcgtcgctgctcaccgccgccaccgctgctccccgccgccgccagatgcgaagaggagcgccgccgatgacaccactgttccccgccgccgccagatgcaaagaggagcgctgctccccgtcgccgcaggatccggcgagcccgcgcccggatccggtgagcccgtgcccggatctggcgaccttgtgcgcagggtggcggcgaaggaagtaggatgcagcggaggagggcgtgtgcgtggcagaggaggaggagaggatggcctgggggaagaacgcggcggttgagaggaggaggcggcgctgcggcggcgcaagagaagaggagcggcgctgtggcggcgcacgagaggagaagtggaggcaacaagaggaggcgttggagaggaagagggtaaggcagagccggttggtaggaggagaaaataaagggaagaggattggagaggctgacagtgggtccatatatagattaggggtatctatttctttttgttgttagaaggactaaaatagttaattttataataacaaatatcatagggactaacacaaataggtaggggctgaaacacaaaatatactctgcagtggtctccattgtagatatcgtggtttttgtgtggccttatcctatgtggcaacctgagaccatagttgcttgtggcttgcattgtacatgccctaattatttggtattgttgcaactattttgcaggaatacttctggctttgtgtaccttcgatttgacagtataacagctgccatgagtgcacagaaagcacttcatgggaggtggtttgcgggaaagatgattacggcaacatttatggtatggaatacaacatttaattgaggtcaatcttccctttctaaattttgggtttgctgattgctcttttgctgtgtcagtctccgcagcagtactcaacgaagttcccgagctagcggacagcaactttcggttgatcgctgaagattcttgctctattgctgtgtaacggtctcctgtaacattatgtcatgcagccttttgtactttatagcatgggttattcaacact</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0153000, RefSeq:Os03g0153000