Os03g0158500

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Revision as of 12:20, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0158500| Description = YT521-B-like protein family protein| Version = NM_001055557.1 GI:115450842 GeneID:4331683| Length = 4263 bp| Defini...")
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Gene Name

Os03g0158500

Description

YT521-B-like protein family protein

Version

NM_001055557.1 GI:115450842 GeneID:4331683

Length

4263 bp

Definition

Oryza sativa Japonica Group Os03g0158500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:3104552..3108814

Sequence Coding Region

3105026..3105238,3105336..3105482,3105571..3105783,3105870..3106487,3106594..3107133
,3107490..3107563,3107757..3107874,3107999..3108084,3108437..3108551

Expression

GEO Profiles:Os03g0158500

Genome Context

<gbrowseImage1> name=NC_008396:3104552..3108814 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:3104552..3108814 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgccgtcgcgccgcctcaggtcccggtcgtcgcgccggcgcccgctgctgctgctgctcctcctgccccggctcctgccgccgccgccaccgctgcccccgtcgcggatcaaaccacggatctgctgcagaagttgtctttggattcgcagcccaaggcggtggatgcggccaccgagcccgccggcgctaagaaggggcctgcagccagccagcctcttagcgtggcgattcctcctgagcggtccatcacgccagtgcttcaggattttatggatcccaacatgttctacctgccagcatactactatggaggttacgacggatctgtgagcgagtgggatgattatcctagatatgtaaatccagatggagtggagattaccccagcagtatatggagatatttatggatatgggtatgctccttatggtgcatactcccctgctagttccccagttccaacggttgatggccaaatgtttggccagcactatcagtatccaacttcgtattatcagcctcctacaccagttccttctaccactcaaggcgacctgcagccttctgccaatcctgacaagccaacagctaaggcagatccagctaaaacaaccacaaatggtgctcctaatggtactgttcacagtaacagtggaactgtaccccttggatcaagccagcaaaattcatcactgacccctgatggaacttatagggcacccttgctaggtggagttccttctgctggttacctggactctacatatgggtatgacagcacaggagcacactttgcatggtatgatggttctgcttatacaaatggacagcagagaacaactacaaccaatcacatgtcgtcttcaacattcagtaatggctcttctgcaaggactcaaaacaagggctccacacctcagcagatgggcatgaataacagaagacctacaactacaacaggatcagctgctcctacatatccgaataggatgtacccgagcacccggtcttacagccagtatggaaactcatacaaaactggtctttcgtacagcacaaatggttatggaagtaatggctatggtagtaatggttatgattccaggctatatggtcggtggggtcttagtatggataacaggtacaagccaagaggccgtggtaacgggtactatggttttggcaatgagagtcaggatggaacaattgagttgaacagaggtcctagatcaggccgtttcaagaaccagaaattgtttggccatactgtcactattgctgtgaaagggcagagccttcctacaagtgacagcatgaatgctactgatgtacctgatagaacacagttcaaccgagatgacttccctgtccaatatgatgatgcaaagttctttgtcattaaatcatacagtgaggatgatatccataagagcataaagtacaatgtgtgggcaagtaccactaatggaaacaagaagcttgatgctgcttatcaggaagctcaggctaagagctccaaatgcccaatattcttgtttttctcggttaatactagtgggcagtttgttggtgttgctgaaatgactggcgctgttgattttgagaagaccttggagtactggcaacaagataagtggaatggttccttatctctcaagtggcacattgtcaaagatgtgcccaacaatattctcaagcacatcatcctagagaacaatgagaacaagccagtgacaaatagccgtgacacacaagaggtaaaccttgaccaaggcattcaaatgcttaagatattcaaggagcatgtcagtaagacctccatcttggatgactttgctttctatgagaaccgtcagaagttgatgcaggaaaagagggtgaaacaacagcagatccaaaagcaggtctgggacagtagggctccaagttctgtcactggagagaagcagcaggatgctgctactgcgaagccaaagctaccaaatggcgtcaatggagaactgaaggttcctgcagagaacggcacagctccagtcgttacctatgcagcgaaggtcgcccaaacagcagcgactgagaagcctgcccttgccaacggcaccgtcaaagctagttaa</cdnaseq>

Protein Sequence

<aaseq>MAAVAPPQVPVVAPAPAAAAAPPAPAPAAAATAAPVADQTTDLL QKLSLDSQPKAVDAATEPAGAKKGPAASQPLSVAIPPERSITPVLQDFMDPNMFYLPA YYYGGYDGSVSEWDDYPRYVNPDGVEITPAVYGDIYGYGYAPYGAYSPASSPVPTVDG QMFGQHYQYPTSYYQPPTPVPSTTQGDLQPSANPDKPTAKADPAKTTTNGAPNGTVHS NSGTVPLGSSQQNSSLTPDGTYRAPLLGGVPSAGYLDSTYGYDSTGAHFAWYDGSAYT NGQQRTTTTNHMSSSTFSNGSSARTQNKGSTPQQMGMNNRRPTTTTGSAAPTYPNRMY PSTRSYSQYGNSYKTGLSYSTNGYGSNGYGSNGYDSRLYGRWGLSMDNRYKPRGRGNG YYGFGNESQDGTIELNRGPRSGRFKNQKLFGHTVTIAVKGQSLPTSDSMNATDVPDRT QFNRDDFPVQYDDAKFFVIKSYSEDDIHKSIKYNVWASTTNGNKKLDAAYQEAQAKSS KCPIFLFFSVNTSGQFVGVAEMTGAVDFEKTLEYWQQDKWNGSLSLKWHIVKDVPNNI LKHIILENNENKPVTNSRDTQEVNLDQGIQMLKIFKEHVSKTSILDDFAFYENRQKLM QEKRVKQQQIQKQVWDSRAPSSVTGEKQQDAATAKPKLPNGVNGELKVPAENGTAPVV TYAAKVAQTAATEKPALANGTVKAS</aaseq>

Gene Sequence

<dnaseqindica>3577..3789#3333..3479#3032..3244#2328..2945#1682..2221#1252..1325#941..1058#731..816#264..378#ttttcccctttcacaccgtactgccggtttgctagccgcctcgctgctccggctccgcctctccacccatcccgccgccaccgccgccgccgccgcctcatcctcctctctacccgcgccgccgcgcctagctatctctaggaagggaggagaaggggccgggtgcgcgcgcgctcgctcgctcgctcgtctcgccggatctacagccgccgccgccgcctccgggtgttctctgcttgggatctatctcgtgagccaaagccatggccgccgtcgcgccgcctcaggtcccggtcgtcgcgccggcgcccgctgctgctgctgctcctcctgccccggctcctgccgccgccgccaccgctgcccccgtcgcggatcgtatcctttgggttgtgacttttgattattttatttctaggtttttggggtttgggtttggggatttggttttggcttgagggttggttgggctgggtgttgctttgaggctgtacggcggccgtctaccgcccgggggtctcagcgtggtcgtgctagggttgacttctccagatcgggctgtgtttactgtttttagccttctgttgattgtgaaatcgaataattgtttatttatttattcatacacaaataattatcatgatgtttagtagggcttagttcgaaggattggattttgggatctgaatgaatctgttttctccttaattcattgttttgctgttggaagaaaccacggatctgctgcagaagttgtctttggattcgcagcccaaggcggtggatgcggccaccgagcccgccggcgctaagaaggtattggataaaacagtggaaatgatggatccttgatgtttgcgtgtatgctcttggttttctgtcggtgatatgtgattctaatacgtgtggttctggtgatttttgactgttaatccagcaggggcctgcagccagccagcctcttagcgtggcgattcctcctgagcggtccatcacgccagtgcttcaggattttatggatcccaacatgttctacctgccagcatactactatggaggtgaggaaccatggaaaaattcttatggtgatcattgagtacagctattttgaatggctgacatgtctttttttttcttgttcattcctatttgttagcgctgtgataagccctgtggctatttataggacattagcttctttcatggtttctcctatgcttacagaattgtgctggtttgcaaaattaccaggttacgacggatctgtgagcgagtgggatgattatcctagatatgtaaatccagatggagtggagattaccccagtaagttaatcttagataatattaccttttcctttccatgtgatattgctgaccataaattgcaccatgtgtcatatacttaatgtagaaatggtccaaatatttgctattattgtctgttgggagctgtcctgtcaaatcttgttggatgtaataagtggaatgctatgcactcacttatttggctatggtttggttatctgtggttcttcttcttattgcttatgctctgtgcactattgcttctctgtgaatcttttgtgttcactgttatttgtctgccactaaatatcctgtcatgagaatcttgcgtgctgtgctatcaactattctgattggcctttggaatttcacaggcagtatatggagatatttatggatatgggtatgctccttatggtgcatactcccctgctagttccccagttccaacggttgatggccaaatgtttggccagcactatcagtatccaacttcgtattatcagcctcctacaccagttccttctaccactcaaggcgacctgcagccttctgccaatcctgacaagccaacagctaaggcagatccagctaaaacaaccacaaatggtgctcctaatggtactgttcacagtaacagtggaactgtaccccttggatcaagccagcaaaattcatcactgacccctgatggaacttatagggcacccttgctaggtggagttccttctgctggttacctggactctacatatgggtatgacagcacaggagcacactttgcatggtatgatggttctgcttatacaaatggacagcagagaacaactacaaccaatcacatgtcgtcttcaacattcagtaatggctcttctgcaaggactcaaaacaagggctccacacctcagcagatggtgagtcttacgaaaacatgttctttttttctccgtatgaatgcactgtcctgatccgctacggctttgattgtgaactgaattatttggcttctctgtaatgcagggcatgaataacagaagacctacaactacaacaggatcagctgctcctacatatccgaataggatgtacccgagcacccggtcttacagccagtatggaaactcatacaaaactggtctttcgtacagcacaaatggttatggaagtaatggctatggtagtaatggttatgattccaggctatatggtcggtggggtcttagtatggataacaggtacaagccaagaggccgtggtaacgggtactatggttttggcaatgagagtcaggatggaacaattgagttgaacagaggtcctagatcaggccgtttcaagaaccagaaattgtttggccatactgtcactattgctgtgaaagggcagagccttcctacaagtgacagcatgaatgctactgatgtacctgatagaacacagttcaaccgagatgacttccctgtccaatatgatgatgcaaagttctttgtcattaaatcatacagtgaggatgatatccataagagcataaagtacaatgtgtgggcaagtaccactaatggaaacaagaagcttgatgctgcttatcaggaagctcaggctaagagctccaaatgcccaatattcttgtttttctcggtaagttatttgtgtcttgtattcatttgtgaatgttaatcatggtttctttttcctaattttgtctttgttgctgtgaacttaaggttaatactagtgggcagtttgttggtgttgctgaaatgactggcgctgttgattttgagaagaccttggagtactggcaacaagataagtggaatggttccttatctctcaagtggcacattgtcaaagatgtgcccaacaatattctcaagcacatcatcctagagaacaatgagaacaagccagtgacaaatagccgtgacacacaagaggtaccttatatttgtccaaattagttcttgacttccaaaaagccacaccatgcggttatcttatttgacctgcttgtttaaatttcaggtaaaccttgaccaaggcattcaaatgcttaagatattcaaggagcatgtcagtaagacctccatcttggatgactttgctttctatgagaaccgtcagaagttgatgcaggaaaagagggtgaaacaacagcagatccaaaagcaggtatatataagcctgagccttgtcttttgtcaatctgtgcaccttggtttctcttatgcctctttggtaactctaatggtcggttctatcattttaggtctgggacagtagggctccaagttctgtcactggagagaagcagcaggatgctgctactgcgaagccaaagctaccaaatggcgtcaatggagaactgaaggttcctgcagagaacggcacagctccagtcgttacctatgcagcgaaggtcgcccaaacagcagcgactgagaagcctgcccttgccaacggcaccgtcaaagctagttaactggatcacataccccatgttccctagctagccatgaagaacaagacggtcctgaagaactcaacaggcatgtggtcccaaggaactgatggtctggaaaactcttatctgtgaaactggcagcacgggcccaagatcctgctgcttggctgctactggggagcagttggctagttagttttgcctagttttcttttgccgtattcccgttttcggtttgcttttttttagctcgctctaagactccgtttatagtatcgtcgaaaatgccagaaaaaaacctagcggcaaagacaacaagttgcaaagaccatgtctggctttggtgcgttgcgtttcgcgcttattcagtggggggtggagtactataatcccgttgttgagtggttctggaagtgggttagattggtgctatttattttacttaaaagaatcttgctttatatacatctgatgatgcagggtctcgcctct</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0158500, RefSeq:Os03g0158500