Os03g0168400

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Revision as of 12:21, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0168400| Description = Protein prenyltransferase domain containing protein| Version = NM_001055625.1 GI:115450978 GeneID:4331754| Length = ...")
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Gene Name

Os03g0168400

Description

Protein prenyltransferase domain containing protein

Version

NM_001055625.1 GI:115450978 GeneID:4331754

Length

4433 bp

Definition

Oryza sativa Japonica Group Os03g0168400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:3668341..3672773

Sequence Coding Region

3668341..3668393,3668499..3672240,3672364..3672444,3672522..3672591,3672706..3672773

Expression

GEO Profiles:Os03g0168400

Genome Context

<gbrowseImage1> name=NC_008396:3668341..3672773 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:3668341..3672773 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtggaagactttgcagttatgcagctcaatccatctccggcggcatctaaggcaagaacctaagataatatgccatggttatgctaatggtgcttcagagctgaattccaacgcaaggagcttgttgaaaggtgaaatctgctacactgggaagaagaaagagagcatctctgtttccagttcaaacatcgctgtctcttcacagggcattggatttagtttggagcaaagaactggagagaagtgcttagccaattcccatttggatgtaaagctgtgcactggaattgtaaagctggttatagataagtgctcttatatttttaagagtaaagggggcatctttgatgggaactgcagattgcaagatgttcttaagcttggtttctggctctcaccagagacactccgcccattttggcgtgcttcagagctgaagcctgatgatttccttaacatcttgattggctttgggccagatgctgcagaagtgaagaaggcaatatttttgtggaatttgtactggtgggcttcgtggcagagcaaggcattccaacatcttccaaggtcgaatgaaattatggtgtcaatacttgcaaatgctcatatgcttagccaagcggaatcattgcttctcttgttggatggcaacagggttctggctgatgcaggtaaactgtttagtcaggttatccaagcgtatgcagaagctggcaaccttggtaagtcaatttcaatttatgactgtgcacaggataggtgtctgattccttcaggctcatgctaccaggtacttcttcatctactgatggaaaggagaaaaaatgacttagttttaagagtatatttggacatgcttggagctggattaggttcttacacggaaggagatattcttgatattgttgtcaaggctttaatcaagaaagacaaatttttgcaagctattggtataattcggcagttaaaggatttgaacattcaaatgagtaagggatccttatcagctgtcacacaagaattttgcaagaagaaggatattggagatatgatgaatttcttagaagagtggaggtatctacctgacttgcttctcagcaatagaattattgcctctttatgtgcaaatattggtactgatgaggcatggttggttttccaaagattggaagtcttagggtttgtgccagatgcaactacttttggaatcttcatacgttacagctgtagagaattgaagctgaaggctgcatttctatatttatctgagtgcttttctagacatattaaccctaaagtttgtgcttataatgctattataggtggtatttttaaggagggattatacaggcatgcaaagtatgtctttgaagacatggctgaaagaaaaattattccagaactgttaacatacaagatacttttggcaggatattgcagatataggcagtttgatgaaatagaacaaaccttgaggactatggaaaccaatggcataaatgatatcccgtctggaaattgtgtgctttctaaggccttatcattcttggggctagaccacctaggggtgaaagtcaagagagataatgctgcaggctatccaaaggctgagtttttcgattcagtaggtaatggtctatatttggacactgattccacaaagtttgaggcttcattggtacagattatcgattatgctctttacccagatattagcttgaatctagtcagggcatgtcggcaaggtgatatcgcaagtgctcttgtactcaaagatgaaacttttcaatggggacatgacatttctacagctagctactcagaactattaaaggccttaagcgcgagccctgctcgtgcaatggatgccattaaccttattgacgagatggcagatacacctgacaaatttgatgctcaaaatctaaatctggctgtccaaacattgagtaggaatgggaggtcagcttgtgcaaggttggctttcgacagattgcttagagatggcttccctgctagtcaagatacctatacttatttgatgatagggttctgcatagaaagggacatagcaggattttgggaatgttggagtctggcaacaaagcatggatggtcacctggtagcagggatgtgatcccccttatcagtcacttgagcaaatggggggtaatcgaggaagccttggagtttatcagcgtgttgctggactgttaccctagtttgtttttcagtgcatactgccaacttctcgaagagttatgcatgactggttgcacaagtgttggatgtgcaatgcttgaggctctcatagaaaagggtgtggctgtggatccttcgctaatttgtaatgtgatggaagggtttctaaaggagcataagattgctgaaacaattggaatgtatgacatgttgcttaacagaaacaaagtattaaatgtgtccacttaccaatctgcattgtcttcagtggcaagaattgatgcagaacgagccatggacttggtacaatctgtgatgaacatggaatctactgatttctcaacgtgcagttctatcgtgaagaacttattgcaatcaggaaaaataggccaggtaatgtcagtctttgaggaaacagttttggggaagaagttcaatgctaccttgctaaattcctttctacaagcatattattgtgtaaaaaattggagaaaggcagatgcagttctttgcatgatgttaaagatgcagaatagcctttctatttctagttaccgctttcttgtccgtagaatgtgcgagcaaagtcggatttccagcgcattaagacttaaagagctgatccaagatagggacaagtcaacagaactaattttatacaatattctgattttttatcttttccggagaagacacattttacaggttcataatttgttgaaggatatgaaaagcaatggtttttctccagacaccaccacttatgacttccttgtcaatgggtttcacaagtctggagatgtcgatcattcaattaatatgcttgattcttgcattgctcagggattaacgccaagcaatcgtagtctcagagtagtattgagtcaccattgcaagttaggaaaccttgagaaatcactagaattatttcatctgatagaaagcaacggatggaagcatggtttagtcattgagacaaccctcatttcaagtcttctctcatcagggaggttttctgaagcaacatcttgtctgaacagcatgaacaaaagagagctgattgggtttgacatacattttgatgtcctaatcaaggaactctgcttactgggagatgtggaaatgtctgttagtctgctaaatacaatgctaaagaaaggcaaaattccgagtgaagttagctacgactctgttgtgtacaggctatgtatgttgaaagaattcgatcaggcacttgattttcttgctgagatgcaatttgcgaacctaaaaccaagcgacatgtcctgcgatgtgcttatacagggcctttgtgccatgggaagaacctgtgatgctatgaatattttggaaatgttgaccaccattggctcttcaccatcctatcacatgtatagagttgtttttgagaactgttgcaggagtaacaatctacagaaggctgcaacacttctgcatgacatgcagcaagctgggttctcacccaactttgagatgcactggtctgttattagcaatttaagtagtaatgctaagaggactacaggatatgagaagcctattttgtccaaccttatttcttcaactcaaacaccagtggaactgacagaactccatgagatcaagctaatgcaattgaatgttccattcacatctgaaggtcatgataaggatgtactttcgattatcgtttatgttggcggagataatgctgatattatatcactccatcaaatcagagtgttactactagttgtgcttgcgcagacacttcttctagccatgaaagacacactggagctcacttga</cdnaseq>

Protein Sequence

<aaseq>MWKTLQLCSSIHLRRHLRQEPKIICHGYANGASELNSNARSLLK GEICYTGKKKESISVSSSNIAVSSQGIGFSLEQRTGEKCLANSHLDVKLCTGIVKLVI DKCSYIFKSKGGIFDGNCRLQDVLKLGFWLSPETLRPFWRASELKPDDFLNILIGFGP DAAEVKKAIFLWNLYWWASWQSKAFQHLPRSNEIMVSILANAHMLSQAESLLLLLDGN RVLADAGKLFSQVIQAYAEAGNLGKSISIYDCAQDRCLIPSGSCYQVLLHLLMERRKN DLVLRVYLDMLGAGLGSYTEGDILDIVVKALIKKDKFLQAIGIIRQLKDLNIQMSKGS LSAVTQEFCKKKDIGDMMNFLEEWRYLPDLLLSNRIIASLCANIGTDEAWLVFQRLEV LGFVPDATTFGIFIRYSCRELKLKAAFLYLSECFSRHINPKVCAYNAIIGGIFKEGLY RHAKYVFEDMAERKIIPELLTYKILLAGYCRYRQFDEIEQTLRTMETNGINDIPSGNC VLSKALSFLGLDHLGVKVKRDNAAGYPKAEFFDSVGNGLYLDTDSTKFEASLVQIIDY ALYPDISLNLVRACRQGDIASALVLKDETFQWGHDISTASYSELLKALSASPARAMDA INLIDEMADTPDKFDAQNLNLAVQTLSRNGRSACARLAFDRLLRDGFPASQDTYTYLM IGFCIERDIAGFWECWSLATKHGWSPGSRDVIPLISHLSKWGVIEEALEFISVLLDCY PSLFFSAYCQLLEELCMTGCTSVGCAMLEALIEKGVAVDPSLICNVMEGFLKEHKIAE TIGMYDMLLNRNKVLNVSTYQSALSSVARIDAERAMDLVQSVMNMESTDFSTCSSIVK NLLQSGKIGQVMSVFEETVLGKKFNATLLNSFLQAYYCVKNWRKADAVLCMMLKMQNS LSISSYRFLVRRMCEQSRISSALRLKELIQDRDKSTELILYNILIFYLFRRRHILQVH NLLKDMKSNGFSPDTTTYDFLVNGFHKSGDVDHSINMLDSCIAQGLTPSNRSLRVVLS HHCKLGNLEKSLELFHLIESNGWKHGLVIETTLISSLLSSGRFSEATSCLNSMNKREL IGFDIHFDVLIKELCLLGDVEMSVSLLNTMLKKGKIPSEVSYDSVVYRLCMLKEFDQA LDFLAEMQFANLKPSDMSCDVLIQGLCAMGRTCDAMNILEMLTTIGSSPSYHMYRVVF ENCCRSNNLQKAATLLHDMQQAGFSPNFEMHWSVISNLSSNAKRTTGYEKPILSNLIS STQTPVELTELHEIKLMQLNVPFTSEGHDKDVLSIIVYVGGDNADIISLHQIRVLLLV VLAQTLLLAMKDTLELT</aaseq>

Gene Sequence

<dnaseqindica>1..53#159..3900#4024..4104#4182..4251#4366..4433#atgtggaagactttgcagttatgcagctcaatccatctccggcggcatctaaggtgagagtgcgctttctagttcaagaactgcatggttgttcctattggtacatgtacactaagtatttcttcttatatgcatgtcaattcccttctgatcgtcaggcaagaacctaagataatatgccatggttatgctaatggtgcttcagagctgaattccaacgcaaggagcttgttgaaaggtgaaatctgctacactgggaagaagaaagagagcatctctgtttccagttcaaacatcgctgtctcttcacagggcattggatttagtttggagcaaagaactggagagaagtgcttagccaattcccatttggatgtaaagctgtgcactggaattgtaaagctggttatagataagtgctcttatatttttaagagtaaagggggcatctttgatgggaactgcagattgcaagatgttcttaagcttggtttctggctctcaccagagacactccgcccattttggcgtgcttcagagctgaagcctgatgatttccttaacatcttgattggctttgggccagatgctgcagaagtgaagaaggcaatatttttgtggaatttgtactggtgggcttcgtggcagagcaaggcattccaacatcttccaaggtcgaatgaaattatggtgtcaatacttgcaaatgctcatatgcttagccaagcggaatcattgcttctcttgttggatggcaacagggttctggctgatgcaggtaaactgtttagtcaggttatccaagcgtatgcagaagctggcaaccttggtaagtcaatttcaatttatgactgtgcacaggataggtgtctgattccttcaggctcatgctaccaggtacttcttcatctactgatggaaaggagaaaaaatgacttagttttaagagtatatttggacatgcttggagctggattaggttcttacacggaaggagatattcttgatattgttgtcaaggctttaatcaagaaagacaaatttttgcaagctattggtataattcggcagttaaaggatttgaacattcaaatgagtaagggatccttatcagctgtcacacaagaattttgcaagaagaaggatattggagatatgatgaatttcttagaagagtggaggtatctacctgacttgcttctcagcaatagaattattgcctctttatgtgcaaatattggtactgatgaggcatggttggttttccaaagattggaagtcttagggtttgtgccagatgcaactacttttggaatcttcatacgttacagctgtagagaattgaagctgaaggctgcatttctatatttatctgagtgcttttctagacatattaaccctaaagtttgtgcttataatgctattataggtggtatttttaaggagggattatacaggcatgcaaagtatgtctttgaagacatggctgaaagaaaaattattccagaactgttaacatacaagatacttttggcaggatattgcagatataggcagtttgatgaaatagaacaaaccttgaggactatggaaaccaatggcataaatgatatcccgtctggaaattgtgtgctttctaaggccttatcattcttggggctagaccacctaggggtgaaagtcaagagagataatgctgcaggctatccaaaggctgagtttttcgattcagtaggtaatggtctatatttggacactgattccacaaagtttgaggcttcattggtacagattatcgattatgctctttacccagatattagcttgaatctagtcagggcatgtcggcaaggtgatatcgcaagtgctcttgtactcaaagatgaaacttttcaatggggacatgacatttctacagctagctactcagaactattaaaggccttaagcgcgagccctgctcgtgcaatggatgccattaaccttattgacgagatggcagatacacctgacaaatttgatgctcaaaatctaaatctggctgtccaaacattgagtaggaatgggaggtcagcttgtgcaaggttggctttcgacagattgcttagagatggcttccctgctagtcaagatacctatacttatttgatgatagggttctgcatagaaagggacatagcaggattttgggaatgttggagtctggcaacaaagcatggatggtcacctggtagcagggatgtgatcccccttatcagtcacttgagcaaatggggggtaatcgaggaagccttggagtttatcagcgtgttgctggactgttaccctagtttgtttttcagtgcatactgccaacttctcgaagagttatgcatgactggttgcacaagtgttggatgtgcaatgcttgaggctctcatagaaaagggtgtggctgtggatccttcgctaatttgtaatgtgatggaagggtttctaaaggagcataagattgctgaaacaattggaatgtatgacatgttgcttaacagaaacaaagtattaaatgtgtccacttaccaatctgcattgtcttcagtggcaagaattgatgcagaacgagccatggacttggtacaatctgtgatgaacatggaatctactgatttctcaacgtgcagttctatcgtgaagaacttattgcaatcaggaaaaataggccaggtaatgtcagtctttgaggaaacagttttggggaagaagttcaatgctaccttgctaaattcctttctacaagcatattattgtgtaaaaaattggagaaaggcagatgcagttctttgcatgatgttaaagatgcagaatagcctttctatttctagttaccgctttcttgtccgtagaatgtgcgagcaaagtcggatttccagcgcattaagacttaaagagctgatccaagatagggacaagtcaacagaactaattttatacaatattctgattttttatcttttccggagaagacacattttacaggttcataatttgttgaaggatatgaaaagcaatggtttttctccagacaccaccacttatgacttccttgtcaatgggtttcacaagtctggagatgtcgatcattcaattaatatgcttgattcttgcattgctcagggattaacgccaagcaatcgtagtctcagagtagtattgagtcaccattgcaagttaggaaaccttgagaaatcactagaattatttcatctgatagaaagcaacggatggaagcatggtttagtcattgagacaaccctcatttcaagtcttctctcatcagggaggttttctgaagcaacatcttgtctgaacagcatgaacaaaagagagctgattgggtttgacatacattttgatgtcctaatcaaggaactctgcttactgggagatgtggaaatgtctgttagtctgctaaatacaatgctaaagaaaggcaaaattccgagtgaagttagctacgactctgttgtgtacaggctatgtatgttgaaagaattcgatcaggcacttgattttcttgctgagatgcaatttgcgaacctaaaaccaagcgacatgtcctgcgatgtgcttatacagggcctttgtgccatgggaagaacctgtgatgctatgaatattttggaaatgttgaccaccattggctcttcaccatcctatcacatgtatagagttgtttttgagaactgttgcaggagtaacaatctacagaaggctgcaacacttctgcatgacatgcagcaagctgggttctcacccaactttgagatgcactggtctgttattagcaatttaagtagtaatgctaagaggactacaggatatgagaagcctattttgtccaaccttatttcttcaactcaagtgaactccccgtgaagtttatatataatagggcaaaaggccattcggagcgaagatataagcaatgctgatgtctggttttccagaaagtggtgaactgacgattgtcaagttgaactgtagacaccagtggaactgacagaactccatgagatcaagctaatgcaattgaatgttccattcacatctgaaggtcatgataaggtaatactactgtctattctaaaagtggaaacaataatcccaaactttggctgtaatcttattatttttctaaacaggatgtactttcgattatcgtttatgttggcggagataatgctgatattatatcactccatcaaatcagaggtgattcacccctgcgacttttctcttcaattagagcctgtgtaatcgattgctttcttgaataacccaatatagagtgtgcactcaacttctcattaattttttttcaatcagtgttactactagttgtgcttgcgcagacacttcttctagccatgaaagacacactggagctcacttga</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0168400, RefSeq:Os03g0168400