Os05g0112000
Os05g0107700, named as xb3, is a recessive gene associated with resistance to rice bacterial leaf blight.
Annotated Information
Function
The receptor kinase XA21 confers resistance to bacterial blight disease of rice (Oryza sativa) caused by Xanthomonas oryzae pv. oryzae (Xoo).The XA21 binding protein 3 (XB3) is capable of inducing cell death when overexpressed in Nicotiana benthamiana. XB3 is a RING finger-containing E3 ubiquitin ligase that has been positively implicated in XA21-mediated resistance. Mutation abolishing the XB3 E3 activity also eliminates its ability to induce cell death. Phylogenetic analysis of XB3-related sequences suggests a family of proteins (XB3 family) with members from diverse plant species. Members of the XB3 family from rice, Arabidopsis and citrus all trigger a similar cell death response in Nicotiana benthamiana, suggesting an evolutionarily conserved role for these proteins in regulating programmed cell death in the plant kingdomCite error: Closing </ref> missing for <ref> tag
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Structured Information
| Gene Name |
Os05g0112000 |
|---|---|
| Description |
Zinc finger, RING-type domain containing protein |
| Version |
NM_001060984.1 GI:115461698 GeneID:4337598 |
| Length |
3751 bp |
| Definition |
Oryza sativa Japonica Group Os05g0112000, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 5:617592..621342 |
| Sequence Coding Region |
618924..619328,619454..619715,620011..620118,620232..620372,620470..620591 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008398:617592..621342 source=RiceChromosome05 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008398:617592..621342 source=RiceChromosome05 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgggtcacggtgtcagctgcgcccgcaccggcgacgagcacgacttcttccgggcggcgcagctcggcgacctcgacgccctggccgccctcctcgccgccgacccttccctcgctcgccgcgccaccctctacgaccgcctctccgtcctccacatcgccgccgccaatggccgcatcgaggtgctctccatgttcttggatcgcggggcgccgccggacgcggtgaatcggcacaagcagacgccgctgatgctcgcggccatgcacggcaagatcgactgcgtgctcaagctcctccaggccgacgcaaatatcttgatgttcgactcggtgcacgcgaggacctgcctccaccacgcggcgtactacggccacgtcgactgcctgcaggccatcctcgccgccgcgcagaccacgccggtggccgactcatggggtttcgcccggttcgtcaacgtcagggacgaccacggcgccactccgctgcatctcgcggccaggcaggggcggccggggtgcgtgcaggtgttgctggagaacggcgccattgtgtcggctttgacaggatcatatggcttccctggaagcacgtcgcttcatttggctgctcgtagcgggaacttggattgcatcaggaagctgcttgcctggggagctgatcggctccaaagggattcggctgggagaattccctattctgttgcgctgaaacggaaccatggagcatgtgcagctttgctgaaccctacatcagcagagcccatggtgtggccatccccacttaagttcatcagtgagcttgaaccagaagctaaggctctcctggaagcagctctgatggaagccaacagggagagggagaagaaaatcctgaatggcacaaagtactccctgccatccccttcgcccggtgatgacagtgccgatgacgatgcatgctcagaggtgagcgacacggagctttgctgcatctgcttcgaccaggcttgcaccattgaggtgcaagactgtggacatcaaatgtgtgcaccgtgcacgctggcactgtgctgtcacaacaaacccaatccgacgaccctgacaccgccctcaccggcctgcccattctgccggggcagcatctcacggctggtggtggcccaaacaaggtctgcttgtgatcctgacaagccgtcatccctgcagctcacccggaagcggtcgcgtcgatctcacaacctcagtgagggcagcagcagcttcaaagggctaccttcggccatgggctccttctcaaagcttggccgtggctcgagccgcatggcggacagtgacagcagcaacctggacaagcctgagcacgatctatga</cdnaseq> |
| Protein Sequence |
<aaseq>MGHGVSCARTGDEHDFFRAAQLGDLDALAALLAADPSLARRATL YDRLSVLHIAAANGRIEVLSMFLDRGAPPDAVNRHKQTPLMLAAMHGKIDCVLKLLQA DANILMFDSVHARTCLHHAAYYGHVDCLQAILAAAQTTPVADSWGFARFVNVRDDHGA TPLHLAARQGRPGCVQVLLENGAIVSALTGSYGFPGSTSLHLAARSGNLDCIRKLLAW GADRLQRDSAGRIPYSVALKRNHGACAALLNPTSAEPMVWPSPLKFISELEPEAKALL EAALMEANREREKKILNGTKYSLPSPSPGDDSADDDACSEVSDTELCCICFDQACTIE VQDCGHQMCAPCTLALCCHNKPNPTTLTPPSPACPFCRGSISRLVVAQTRSACDPDKP SSLQLTRKRSRRSHNLSEGSSSFKGLPSAMGSFSKLGRGSSRMADSDSSNLDKPEHDL </aaseq> |
| Gene Sequence |
<dnaseqindica>2015..2419#1628..1889#1225..1332#971..1111#752..873#590..661#366..425#82..264#attctcactctcggccttccttccacggcagcgccacccactgcgccttcgccggcggcggaggaggagggaggtgcggccatgggtcacggtgtcagctgcgcccgcaccggcgacgagcacgacttcttccgggcggcgcagctcggcgacctcgacgccctggccgccctcctcgccgccgacccttccctcgctcgccgcgccaccctctacgaccgcctctccgtcctccacatcgccgccgccaatggccgcatcgaggtcgctcacctcactgcttcttcttcttcttcttccctcggtctccgggacttgcttgtctcaccctttctctcttgttttctttcttcttcttcttccaggtgctctccatgttcttggatcgcggggcgccgccggacgcggtgaatcggcacaagcaggtgcgagatccccaccaaaatctctcttcttttttgctactgtttttcgaattactagtatctgcttgaaaatatcatattttgattttgaatgaaaaagaaagatctcgtcttgtccttttgttttctcaccttgctttgctcttcttctgcttatgctgcagacgccgctgatgctcgcggccatgcacggcaagatcgactgcgtgctcaagctcctccaggccgacgcaaatgtgagagaaaagaactgcaaaatcagtatactgataatactgtagtaattctgtttgaaaaaatcagtaacagttacgatttcgcaccagatcttgatgttcgactcggtgcacgcgaggacctgcctccaccacgcggcgtactacggccacgtcgactgcctgcaggccatcctcgccgccgcgcagaccacgccggtggccgactcatggtgagatcatcctcatcctgtcgtgtggctttggtacagctatagaatagctctggatgtctctgtgagctcacttgctgctgtcgaagcttggcaggggtttcgcccggttcgtcaacgtcagggacgaccacggcgccactccgctgcatctcgcggccaggcaggggcggccggggtgcgtgcaggtgttgctggagaacggcgccattgtgtcggctttgacaggatcatatgggtaatgctgctgatcttggtggcatcccaaattaatgtttggtgatcagctgttcagctctgttggttccttgctaccagtgctgattcgtgtggtggtgttgtttgatgcagcttccctggaagcacgtcgcttcatttggctgctcgtagcgggaacttggattgcatcaggaagctgcttgcctggggagctgatcggctccaaagggattcggctgggtgagaactagatctttcccccttcagtttttgtcttggcgcatatagaagaaaacattgatgtgctatcaagcatagttgttagtgaagttcaggtgttgaatttaggtgcttagtagaatccctgcagttcttagacagtagacctcagtctagcaagtagtaacaggtgaactcgctgaccatttgctgaattcacatgagcttgctgttcttctcaaacttgacctgtccttttgctgaattgcccatgctctgccactgattttaattttaatggtttttgtttccccaggagaattccctattctgttgcgctgaaacggaaccatggagcatgtgcagctttgctgaaccctacatcagcagagcccatggtgtggccatccccacttaagttcatcagtgagcttgaaccagaagctaaggctctcctggaagcagctctgatggaagccaacagggagagggagaagaaaatcctgaatggcacaaagtactccctgccatccccttcgcccggtgatgacagtgccgatgacgatgcatgctcagaggtatttgagtgctgaacaatttcagtgttatctgtcagattgggatcccataaacacattgtgtaatttagctttctgtgcatttgcatgatgactgaatggctgtgttgatcatttgggcacaggtgagcgacacggagctttgctgcatctgcttcgaccaggcttgcaccattgaggtgcaagactgtggacatcaaatgtgtgcaccgtgcacgctggcactgtgctgtcacaacaaacccaatccgacgaccctgacaccgccctcaccggcctgcccattctgccggggcagcatctcacggctggtggtggcccaaacaaggtctgcttgtgatcctgacaagccgtcatccctgcagctcacccggaagcggtcgcgtcgatctcacaacctcagtgagggcagcagcagcttcaaagggctaccttcggccatgggctccttctcaaagcttggccgtggctcgagccgcatggcggacagtgacagcagcaacctggacaagcctgagcacgatctatgaaagcagaacaacgcacggacaatcgccgcatcatcctcaaaacatccgttggtatcagaaacccagatgaaaatccaatggctaatttggagcaactttgatccatggaaagttaaatagatagggactaaataagtagaaccctccactccccattgtctgtgtgcccaccctatttttcggcttgccgggttaagcttagcatatgcataggagctctgaaagaccagagagagagtgagtgagtgagtgagagcaattcatcatcaatcacacagtgagtgttggtgtggttaagggatgcatgcagcagagatgtgaaacggggttcatgttcgtcacctctaaagttagcctgccatggcatgtgagctctgcgccggcctgacccctcctcctctgtgtgatgaatcatgcccccatttttggcccttgtctcgtgttataatggtgcgagttcatgtcctggtgatgctgcagccatcagcagggtggtccattggatcgccatgaattcagcagctgcggtctctgcctatgtgatgacattgtatgtaccgtactccagtgtgtaccggttctttgaactgtggtggcgtgtcactgtctctgtcagtgccactgtccatcgtcgtccggctgttacagccggattgttactgctagtaattggcttccttcgttcgttcgtgatggcatcagcatcagattgtttcttttcttcaggctgataaaatgaagactgttgttgcctgtagctgtatggttgtccttgcgatctgtaccttctcttgtgctcctacctgcagtgatattgtgagatccaggagtagcataatttttctatcgacaaatcataccactacatttcacttggaaagatggacttagcatcataggtttaggtgagactgaggaccaactctgattaacactgaagtctgccgtgtggattgggtttagattgaaagaaattcatggagataacaagaatttttgtggcaaaagctttgttgttatgcagagtttaaggactaggagatgactatatgagacacaagccaagtgctactgtagtttgttttgaccaggacacagcacacaacttggaatttggaaaccttccaagtcatggctgcaattccacgtcaggcttggtgatcgacctagtagttcttttgcttcttgtgacgaactgacgataacacggacagatatttgtgaagctttggccattctatagtccatatgatcactcaagcaaaaaatatcttggtgccacacctcatcatgtgacagaaactaactaataatttcaaagtgcgattaatt</dnaseqindica> |
| External Link(s) |
- ↑ Spielmeyer W, Ellis MH, Chandler PM (2002) Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene. Proc Natl Acad Sci U S A 99: 9043-9048.
- ↑ Monna L, Kitazawa N, Yoshino R, Suzuki J, Masuda H, et al. (2002) Positional cloning of rice semidwarfing gene, sd-1: rice "green revolution gene" encodes a mutant enzyme involved in gibberellin synthesis. DNA Res 9: 11-17.
- ↑ Hedden P. (2003) The genes of the Green Revolution. Trends Genet 19: 5-9.
- ↑ Peng J, Richards DE, Hartley NM, Murphy GP, Devos KM, et al. (1999) 'Green revolution' genes encode mutant gibberellin response modulators. Nature 400: 256-261.
- ↑ Asano K, Hirano K, Ueguchi-Tanaka M, Angeles-Shim RB, Komura T, et al. (2009) Isolation and characterization of dominant dwarf mutants, Slr1-d, in rice. Mol Genet Genomics 281: 223-231.
- ↑ Reagon M, Thurber CS, Olsen KM, Jia Y, Caicedo AL (2011) The long and the short of it: SD1 polymorphism and the evolution of growth trait divergence in U.S. weedy rice. Mol Ecol 20: 3743-3756.
