Os11g0490600
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Contents
Annotated Information
Function
LAZY1 (LA1) gene regulates shoot gravitropism by which the rice tiller angle is controlled. LA1, a novel grass-specific gene, is temporally and spatially expressed, and plays a negative role in polar auxin transport (PAT). Loss-of-function of LA1 enhances PAT greatly and thus alters the endogenous IAA distribution in shoots, leading to thereduced gravitropism, and therefore the tiller-spreading phenotype of rice plants. LA1 is an essential regulator of tiller angle of rice, opening a promising way for breeders to develop elite rice cultivars and other cereal crops with optimal plant architecture. LA1ΔN100 is the truncated LA1 with a deletion of amino-acid residues1-100 that contain a predicted transmembrane domain. LA1ΔNLS refers to the LA1 truncated from amino-acid residues 286 to 312, a segment containing a putative nuclear localization signal (NLS) domain. The 996-1571 bp region of the LA1 gene was subcloned into the T-easy vector and used as templates to generate sense and antisense RNA probes. Rice LA1gene is responsible for the tiller-spreading phenotype of mutant plants.
Expression
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Evolution
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Labs working on this gene
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References
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Structured Information
| Gene Name |
Os11g0490600 |
|---|---|
| Description |
Conserved hypothetical protein |
| Version |
NM_001074458.1 GI:115485564 GeneID:4350543 |
| Length |
5524 bp |
| Definition |
Oryza sativa Japonica Group Os11g0490600, complete gene. |
| Source |
Oryza sativa Japonica Group ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
clade; Ehrhartoideae; Oryzeae; Oryza.
|
| Chromosome | |
| Location |
Chromosome 11:19145382..19150905 |
| Sequence Coding Region |
19145410..19145415,19145782..19145851,19147818..19148686,19150064..19150349,19150566..19150585 |
| Expression | |
| Genome Context |
<gbrowseImage1> name=NC_008404:19145382..19150905 source=RiceChromosome11 preset=GeneLocation </gbrowseImage1> |
| Gene Structure |
<gbrowseImage2> name=NC_008404:19145382..19150905 source=RiceChromosome11 preset=GeneLocation </gbrowseImage2> |
| Coding Sequence |
<cdnaseq>atgaagctcttaggttggatgcatcgaaagctacggagtaataatgacgtgttcaaagagttcaacaccggaggaggtggggcctgcaactgcatcaccgggcttgcctcgcctgaccacgacaacgactacttctccggcgacgacgccgcccacgcctcgccgccggtcaccgccggcgacctcttcaccttcggcggcagcggccttctcaccatcggcacgctaggcatcgccgccgtcgccattcccagcggcggcgacgacgacgactacgacatcgacttcgaggtggacgccaccagcgacgacgacggcggcttcaccgtcgaggacgacgacgccgacgtcggcggcgccgtcacgcccaccttcaccttccccgcggcgacggcggcggaggcggtcgtcgccaccgtggagaaggcagtggccgcggtggaggcgatcgcggagaaggacgacgacaccaccacggaggacgacctgatggtggtgagcgccgagctggagaaggtgctcggcggcgtcgacgtggcgtcggcgcgggtgagcttcgccatgggcggtggcgtcgactgcccgctccagggcttcctgttcggctccccggtgagcgacgtcgagtcgcgcccggagtacctgcaggcgccgcgggactcgtccggctcctgcggcggcggcgggcggcgcacctcgctcggcgagctgttcatgcgcacccgcttcgccgacgagaaggtggcgctcgtcgccgtcgccgagggcgaggacggcgtcgccggcgacgacggcgctgctgctgccggcgtcggcggagacagagcggggaaaggcggcggctacaagacgatgaagaagaggaaggtgaaggacgagaaaggcggcggcggcgccgccggcggtggaatgccggcgacggtgacgaagagcaagtttcagaagatccttcaaatcttccacaggaaagtctaccccgagaacacactcctcacaaggaatctgaccaagaagagccgcaaccgcggcgccaccgataatggcggtggcgccgtggccaccggagaccccgacgggcctctggcctcgccggtgctccggtgccggaaggaccatcccatgaggggcttcggctgctgcaccaatggcgccttcggtgcatcgtcaccgggaggcaacgccgagatgaacggcaacaagagcggccactggatcaagactgatgccgactacttggtgctggaattataa</cdnaseq> |
| Protein Sequence |
<aaseq>MKLLGWMHRKLRSNNDVFKEFNTGGGGACNCITGLASPDHDNDY FSGDDAAHASPPVTAGDLFTFGGSGLLTIGTLGIAAVAIPSGGDDDDYDIDFEVDATS DDDGGFTVEDDDADVGGAVTPTFTFPAATAAEAVVATVEKAVAAVEAIAEKDDDTTTE DDLMVVSAELEKVLGGVDVASARVSFAMGGGVDCPLQGFLFGSPVSDVESRPEYLQAP RDSSGSCGGGGRRTSLGELFMRTRFADEKVALVAVAEGEDGVAGDDGAAAAGVGGDRA GKGGGYKTMKKRKVKDEKGGGGAAGGGMPATVTKSKFQKILQIFHRKVYPENTLLTRN LTKKSRNRGATDNGGGAVATGDPDGPLASPVLRCRKDHPMRGFGCCTNGAFGASSPGG NAEMNGNKSGHWIKTDADYLVLEL</aaseq> |
| Gene Sequence |
<dnaseqindica>29..34#401..470#2437..3305#4683..4968#5185..5204#atcttagcacgctaaaccggcttccaagatgaaggttagtgtttcatctattgaacatatccatgcttattagtttcgtaatgtagatactaagtttatgtatatgtagttctcttttggaacttgagttgttaatttctttttgtaaatattttttgtttggtttggttacgttgctggcctagctgatcatgctttctgggttgaataaatgtagctacaactattaatcctttattttgtttttccatcattgccgttgtcatcatctttcattgtcatcatcatcttctccttttgacgatcttcatcagatcttgatcaaaagtaatagaccatgcattttcatgattgatgaagttcataaaaatttctgatcctcatatgtgtatatgatcagctcttaggttggatgcatcgaaagctacggagtaataatgacgtgttcaaagagttcaacaccggaggaggtatgcacgcacaacttaattaatctattttttgtcctttttttcttatgtttaattgatgaagtataattgttttgaaaaatacagtagctcgtaacacaaacgcactcacctctagtactctctccagtgtttttatatattaaactaacgtcatataaaaaattgaagttagtatatatgtataatagttcatcggtacatgcagaaaaaaaaaagagtttgtctctggttttagatctgtaagcatgcccacaataatgagaaaaccactgcaaaattgttggccggccggtcccacatgtcattgaccagattagccgtctgaagtgctgaactgtatggaacactagcaatcatcaatgggagttttgcactcttgcgcttggtcacattggagatggcacatctatctataatatcacacatgccacttttcttccagcctcaatatctatagttccagcactagctagctagctagaccaactattgcatagcaagaaccctatattatcattttgcagataacattttcttttccatgtagtaacattgccatggaaagatcacgagggcatgtctatcttttgtgaaactctctctctctccttttgaaggcttcctttgagagttttctccttgttggactgttgctcttaggctcagcatgttaatatcagagttttcgcccgtttttcataaatcaattgtgccgttgtaagatttttgcgtccagttttccttataaactggacctctctgcctgtttcctcgagaaaaattgtccaagagcattctcgacgattcaacaactagaattcaacaaataaagatttttatatatggtgcatatggtacggtgagatattgtatttttagtgtgagataccaaaagagctacaacaaattaatacgataaaataagggaaatttcatggactaactagttagaaacatattttgagtaaatgaaaattttattttattaccttggtttacaaaagacttataataagtgctgtcaaacatctaaaatgttaaattcttaatagacgaaaagtattagaatttaaaacgtgaaaattatatactttttgatgaaaaatagtaggaatgtgaaaattatattagtagactttttttgatgaaaactctttcatatagttatatgttaattttttataactatatagtttgagaaagtaatcatataacttttgcattaaaaaatgtgtcaatgtccaaaacattatcttaattaacccggtccttctcctcccaaaggaacacataaaaaaggacaaaaaccaatacatcttgaaaaacttacatagaaaaagcttaatcatattttatatcaccctgatcccgttgcaacgcacatgaatgtaactatttctttttaaaatggtgttgtacttcataaatttgaaacaaaaaaaatacatataatgtaacccttttaatttctgaaacacatcaaaacttttctttctcaaaaaaaagaaaagaaaacacatgaaagcctgcataattttgcatgcaaatgatcgtactccttcctttttaaggttacaagactttcttacattacccaaatttatatagataataaatctagacacaaatatatgtgatttattaatatgtatatgaatgtgaacaatgccaaaaagtcttataatataaaatggagaaagtatttaatactccctcagtttctaaatatttgacaccattgattttttaaacatgtttaatcattcgtcttattcaaaaattttaagtaattattaattattttcctatcatttgattcattgttaaatatacttttatgtatacatataattttacgtatttcacaaaagtttttgataagacggacggtcaaacatgtgctaaaaagtcaactgtgtcagatatttagaaacggagggagtaattcactgtgtgactgcaggtggggcctgcaactgcatcaccgggcttgcctcgcctgaccacgacaacgactacttctccggcgacgacgccgcccacgcctcgccgccggtcaccgccggcgacctcttcaccttcggcggcagcggccttctcaccatcggcacgctaggcatcgccgccgtcgccattcccagcggcggcgacgacgacgactacgacatcgacttcgaggtggacgccaccagcgacgacgacggcggcttcaccgtcgaggacgacgacgccgacgtcggcggcgccgtcacgcccaccttcaccttccccgcggcgacggcggcggaggcggtcgtcgccaccgtggagaaggcagtggccgcggtggaggcgatcgcggagaaggacgacgacaccaccacggaggacgacctgatggtggtgagcgccgagctggagaaggtgctcggcggcgtcgacgtggcgtcggcgcgggtgagcttcgccatgggcggtggcgtcgactgcccgctccagggcttcctgttcggctccccggtgagcgacgtcgagtcgcgcccggagtacctgcaggcgccgcgggactcgtccggctcctgcggcggcggcgggcggcgcacctcgctcggcgagctgttcatgcgcacccgcttcgccgacgagaaggtggcgctcgtcgccgtcgccgagggcgaggacggcgtcgccggcgacgacggcgctgctgctgccggcgtcggcggagacagagcggggaaaggcggcggctacaagacgatgaagaagaggaaggtgaaggacgagaaaggcggcggcggcgccgccggcggtggaatgccggcgacggtgacgaagagcaagtttcagaaggtaacttttttttttgttgttgctagcattttaatttgctttgaagaaaactataaaatatctgcaattttggctgactatttcatgaggtttccttggatatgatcatttgattaattagttcgttcgattgctatagttttagttcatttttctttaattaatttgtaataaaactcaagagttattgtgagttttttttttattatttttgcttcagtacgtgcattttctactagtgaaacttcaatattaaccaggccagtcgacatttcttaattgtgatttgatttaagggtcaagattagaactatagattgaatatgcaaagtttcagctcggacgacatttgaacatttgactaattatatatttccgagttcaattgtttgccggtaaaattctgaacttgcagttggaacattcaagattcaactctgattcacatgatctcgaactcaatatctccaactttataaaaagacaaaaagattactgctcaacggtgagtttaatgaaggaatgctcatcacagcaaatccataattctatataactctctgtaatatgtaatggtaagaaacagatattcatgattaaatcatttttccccttcagaaagaaatactgatttttcgtggtacatccaaaattactccaaagtttacactgaatttcacgctgttcttggtgtttaagattaattttaggtagatattttctagtcccgcaacaaagctgacaatgaaaaccccaaaactaatcctaaatgaaattctaaaattaagaaaaacagctttagattataaattttaatagtaagtccaaggaaatagccagcaatgttaataagattgctgataagaatatataacagtttggagccaatccatttcacatgtgtatcctgctctgggacataagtagacacaaatcccgagttttgactatcatctcataatcggaagatctttcactgtgtcgtcagattcgagttaagtttctgtagaccaacttggtgtgtcaatggtgttgttaggagtggggatactgggggcagtgagttgacatgcgatttgtttgcaatctcctgtctaatgctatctttatggatcatttcatttgtcatttttcgtttgccccataaacaacaagggattcttgatttgatatattatacatccttctaggtgctctcttgcatttcttttccttggagagatgctccaaatatccctcaaaagaaattctagattccttttgctactacttggtacttacatttaattttgttacaacgaatgaaagaaactgagtttcagaaagtgatcaaaagttgacaatgttctgaaatgaggaaacatctgctcattgcagatccttcaaatcttccacaggaaagtctaccccgagaacacactcctcacaaggaatctgaccaagaagagccgcaaccgcggcgccaccgataatggcggtggcgccgtggccaccggagaccccgacgggcctctggcctcgccggtgctccggtgccggaaggaccatcccatgaggggcttcggctgctgcaccaatggcgccttcggtgcatcgtcaccgggaggcaacgccgagatgaacggcaacaagagcggccactggatcaagactgatgccgactgtgagtagcactgcacaccttggtgtctccatccatcttcaatggatctatctttgcaatcatgcattcagtcttgacagctacatctttccatactatttttggggaatcttccaagagctatccatcactagtttctgagttactgtgtgctgatgcacacactgcaaacattgtgctttttcactgaaaccctgtctctctgatctgatgcagacttggtgctggaattataatggggaaaagaagaggagctatttgtttcatcaagaattaaagcttgaatagtgagcatctcatatatatgaatatgtgcttgctgttacaatataatctctatctgtttggtatagaagggcttgaatgtgctgtatatgtcactatatattgggggggagaggattactatgagatcaactcataagtgtgtggtgtttatatacattgctctgtgaatgtatgacagagatcagaacttaatgtattgtatgctttcttgatgtgattggtgtttatgagcctagctgatggcaatattgtgtgtgggtccacccct</dnaseqindica> 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