Os03g0172200

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Revision as of 12:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0172200| Description = Armadillo-like helical domain containing protein| Version = NM_001055653.1 GI:115451034 GeneID:4331782| Length = 410...")
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Gene Name

Os03g0172200

Description

Armadillo-like helical domain containing protein

Version

NM_001055653.1 GI:115451034 GeneID:4331782

Length

4102 bp

Definition

Oryza sativa Japonica Group Os03g0172200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:3845589..3849690

Sequence Coding Region

3845824..3845882,3845978..3846080,3846159..3846203,3846425..3846523,3846627..3846695
,3846800..3846859,3847089..3847182,3847424..3847498,3847650..3847768
,3847982..3848149,3849292..3849477

Expression

GEO Profiles:Os03g0172200

Genome Context

<gbrowseImage1> name=NC_008396:3845589..3849690 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:3845589..3849690 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggggtgcctgtggccgtgcgtgaccggcggcggcgcggcggcggacggggcggggagcctgttccggtcgaaggcgaggggccccgtggaggtggtgcggcacgcgcgggagctcctcgccttcctcgccgagaaccacgacgcgtgcggtgacaagcgcgacgtcaaacgcgaacacaagatggtagatctagccaaaagcatcggggagatgaaatccatcctttatggaaatggcgaggcagacccagtcgatgaagcttgctcgcagttgacgaaggagttcttcaaggagaataccaatagtcttcatctactagttgtttgccttccatacatggacctggaaactcagaaggatgtcactcaagttactgcgaatttgctaaggcaaaaggtagattataggatggttgcctctgattatttggaagaaaaccaggatcttttggatgttctaatgtctgggtatgacaacatggacattgcaatacattatagtgcaattctaagggactgcatacggcaccaagtcgctgcaaggtatgtattagagtctcagcatatgaagaaattttttgattatatacaatatccagacttcaacatagcatctgatgccttcaagacctttaaggaactcctcacaaggcatagatcaagtgctgctgagttcttttcaaataattacgattggttttttccggaatttaactcaaaattgctgtcatcatccaactatatcattcgaaggcaagccactcagctactaggagacattcttctggataagtcaaacacaacagcaatggtgcgctatgttagctcaaaggataacctcataatactaatgaaccttttaagggagcaaagcagggccattcaagttgaggcttttcgcgttttcaagctgttcacttgcaatccgaagaagccacctgagatcgtgggtatactggtgacaaacaagagcaaaatcctcaggttcttggcagatttcacaatagaaaaagaggatcagcagttcgaggccgacaaagcccaggttgtcaccgagatatcggccatgtga</cdnaseq>

Protein Sequence

<aaseq>MAGCLWPCVTGGGAAADGAGSLFRSKARGPVEVVRHARELLAFL AENHDACGDKRDVKREHKMVDLAKSIGEMKSILYGNGEADPVDEACSQLTKEFFKENT NSLHLLVVCLPYMDLETQKDVTQVTANLLRQKVDYRMVASDYLEENQDLLDVLMSGYD NMDIAIHYSAILRDCIRHQVAARYVLESQHMKKFFDYIQYPDFNIASDAFKTFKELLT RHRSSAAEFFSNNYDWFFPEFNSKLLSSSNYIIRRQATQLLGDILLDKSNTTAMVRYV SSKDNLIILMNLLREQSRAIQVEAFRVFKLFTCNPKKPPEIVGILVTNKSKILRFLAD FTIEKEDQQFEADKAQVVTEISAM</aaseq>

Gene Sequence

<dnaseqindica>3809..3867#3611..3713#3488..3532#3168..3266#2996..3064#2832..2891#2509..2602#2193..2267#1923..2041#1542..1709#214..399#agcgcacgcacacacgaacggccgagcacgcggccgccggcgccggcgcatcggcggcggcgtacgtgcgaggaagaaggccggccaccataccgatcaccattgtagcgccgcaggaggtgataatctgggtcgtcgtcgtcgtcactgccgacgtacggcgcctagcaccggctgctgggcgagcgagctcgaccgcgttcgcgtgaattaatggcggggtgcctgtggccgtgcgtgaccggcggcggcgcggcggcggacggggcggggagcctgttccggtcgaaggcgaggggccccgtggaggtggtgcggcacgcgcgggagctcctcgccttcctcgccgagaaccacgacgcgtgcggtgacaagcgcgacgtcaaacgcgaacacaaggtgggtgatacacatttttcatgtatcgttcgctcgttccgttccgtttcaaccgagagatgacgagatatgtcctaaattaaagcctgatctgaaaacgcaaaagtttaaaggttgcatatatccagttggatgtagaggccaggtaaaaaaatacacttctaaaaaaatagaaaacacaaacgtgaaaacgttttccaattttaacgatatggaagttttttatatgacaatttaccaatgtcgctttcacacgatacatcgatgtttttcaacttttttttcgcgaacgtataaaaaaaattacacgtcaatatattagaaggtagaagagtttttgttacacagcacaatcaaccagataggcctatgccaggggaaggagaaaaaaaaactgcaggtaggaaaaaagagaaactactttaacatattattttgaaccccctttttaacatattattgattaaagtgtttaattttgtctgcgcatattcgaaagccacattaatttcaaaccagagattgtattagacctatttagatgggactaaaactttttagtccctatcacataggatgtttggacactaattataaatattaaacgtagactattaataaaacatatccataatcttactaattcgcgagacgaatctattgagcctaattaatccatgattagcctatgtgatgctacagtaaatattctctaattatagattaattaggcttaaaaatcttgtctcgtgaattagctttcatttatgtaattagttttataagtaatctatatttaatactctaaattagtgtctaaatatagggactaaagttaagtccttggattaaaacaccaccttattattgtagaatcaattaacagctgagcctgttgccaattaaacagaagatttgactagaataactaggcatgattatattagtcgctctgctttcatcaaaatgagcaggaacttagtataacaacaaaacaataaacatatgtagggggaagttgtgtttgtccaaaattgtgttaaggttagacactacaatttatacgtttaatcattcatatcatcatatatagggggatcttatgcatttgtgactaaatacgcacttgaactaacatgtagatggtagatctagccaaaagcatcggggagatgaaatccatcctttatggaaatggcgaggcagacccagtcgatgaagcttgctcgcagttgacgaaggagttcttcaaggagaataccaatagtcttcatctactagttgtttgccttccatacatggacctggaagtatgtcaaagggatccatatatatttgatatttttcaagaatttagatgctgcattttgtttaatctaagttattgtttaagaaattctctagataagggaaacccatataggaccatgacccactttatcctcaagaagcttatctgcaccaacacatataatttaaaacttcttataatttaagagggtttttctttcgtttttactcagactcagaaggatgtcactcaagttactgcgaatttgctaaggcaaaaggtagattataggatggttgcctctgattatttggaagaaaaccaggatcttttggatgttctaatgtctgggtaagtagtcagttagttcttccttaaccatgcatttctatgatatgtttttttccctaggacataaatgttatggacttcattcttcacattcaacccataaaacagttatatgatcttcattctttacatttacacaacctgtgtacaggtatgacaacatggacattgcaatacattatagtgcaattctaagggactgcatacggcaccaagtcgctgcaaggtaacaagaccatgatttacattactatttttaattaattatgaaaaaaatatatacattttattaaaaaatatatataatatagcaagtaaatttcacaggacaaagcatcaccgttaatatcatgtttcttctttctttatccaatatatcattgtttgcttggcgaattatttatatggttaccagttaccactcactttctcatgatcttcaattaataaacttcataattttgcaggtatgtattagagtctcagcatatgaagaaattttttgattatatacaatatccagacttcaacatagcatctgatgccttcaagacctttaaggtgattatgtcgtccatcttgtacttttaatcttctccttgatgaatgacgattattccaaaggagagactcatccttttctagatcatgtttgtttatgctcccttctgcctttgttgggactcgtaaacgattttaacagaatatgagcaatcatcatagtgtgttgtctgaacaaatgtcttttggtgttgataatggcaattgtgctcaatttaacttttaacaggaactcctcacaaggcatagatcaagtgctgctgagttcttttcaaataattacgattgggtaagatttctcattgctagtaacggagatgttagtattcatcaacttctatttttgacctttgacaaacctccattgacatataattgcaattcatgtgacagttttttccggaatttaactcaaaattgctgtcatcatccaactatatcattcgaaggcaagccactcaggtacacattttttcttgcgttagctgtatatttcacctaaattttacatgatgattgactcgaattttgatgatttgtgatatgcacatgatatgtttttcagctactaggagacattcttctggataagtcaaacacaacagcaatggtgcgctatgttagctcaaaggataacctcataatactaatgaaccttttaagggtaagatctcatatctcatataccatttttgtgtcctaatctcaatctatatttaaggccgtctatgttctttttgttgttaaaaaatgaaatacaactttcaaaaaaaattgaaatacaacagtactgtcgcatcttggttccttaattttcctttgttcagtaatctcgtagctaatatgagtttattttaatatgatatgatgtgttgtcattaccaggagcaaagcagggccattcaagttgaggcttttcgcgttttcaaggtacaattcgtgttaacgcacgaaaaattcgtcagtttgcaaaacgaatactgaacatcttcttgcatgtacattcagctgttcacttgcaatccgaagaagccacctgagatcgtgggtatactggtgacaaacaagagcaaaatcctcaggttcttggcagatttcacaatagaaaaaggtaaagtgtaccttttgtgatcacttctttccatgataaaatcataaatcataaatcaaaaccggtttgctaagacacttgctctgttcttgcagaggatcagcagttcgaggccgacaaagcccaggttgtcaccgagatatcggccatgtgatcaaacaaccggagaaagcgttgatatccacagagagtggagttcctcttgttttcgttttcttcatcataatctaaccaaatggaaaggaaatcaagctgattctactgctacgatgcttgtggtttgggccacttgtccattgaacttgtaactgggccgtttgcttgatagcctctactactactaatgtgtgcgcccttcctctcaaaaaggaaaaaaaaagagaattttg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0172200, RefSeq:Os03g0172200