Os03g0174300

From RiceWiki
Revision as of 12:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0174300| Description = Exostosin-like family protein| Version = NM_001055661.1 GI:115451050 GeneID:4331790| Length = 4808 bp| Definition =...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0174300

Description

Exostosin-like family protein

Version

NM_001055661.1 GI:115451050 GeneID:4331790

Length

4808 bp

Definition

Oryza sativa Japonica Group Os03g0174300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:3957004..3961811

Sequence Coding Region

3957988..3958013,3958433..3958633,3958743..3958998,3959110..3959322,3959405..3959491
,3959638..3959772,3959845..3959958,3960056..3960303,3960373..3960453
,3960528..3960759,3960889..3961026

Expression

GEO Profiles:Os03g0174300

Genome Context

<gbrowseImage1> name=NC_008396:3957004..3961811 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:3957004..3961811 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagatgctttcatggatatgctggttatcatatacaggaaaacgatgtgaggaggttcagaaggtggaatgcaacttaccaagttctcaagaatggcctgtgggacggtggatagtttccatatgtccagcccattgtgatacaacaagggcaatgtgcttttgtggaccaggaacaaaatatccagatcgccctgttgctgaagcttgtggctttaaaacaatcttgcctaaaaaacctgatgactcgaagctcactgactggaaaacacctgatccggatgtattcacgacaaacaagagtaagccaggatggtgcaacgtgaatcctgaggatgcttattcttccaaggtgaagtttaaagaagaatgtgattgcaaatatgacggactctgggggcgattctgtgagacacgtgttgaatgcagctgtattaaccagtgctcagggcatggacattgccgtggtggtttctgtcagtgtgacggtggatattttggaattgattgcagcatgccatcaaattattcagttgcatatggcatgccctcatggctccaaccaccaatgaatttaccagacttgaaaaatataagctccagctccatcaatgttaaggttgttgctaagaaaaaaagaccacttatttatgtatatgatttgccagcagaatttgacagtcatcttcttgaaggacggcattacaagtttcagtgtgtgaacagaatatatgatgacaagaacagaaccatatggacccagcaactgtatggtgctcagatagcactctatgagagcatccttgctagccctcatcgcacactaaatggtgatgaagctgattatttctatgtgccagctcttgactcgtgtctaataactagatctgatgatgccccgcatctgcagatgccgagggacttgcgcctcaggagctaccatactctggagtactacagaatgacttatgatcacatagctcagcggtatccttactggaaccgcacttctggaagagatcatatctggttcttctcatgggatgaaggtgcctgctatgctcctaaagagatctggaacagcatgatgctcgtccactggggaaacactaacacaaaacataagaattcaacgacagcttattgggcagacaactggaattatattcctattgacagaagaggcaaccatccctgttttgatccaagaaaggatcttgtgcttccagcatggaagcaacctaacccagcagccatctggttaaaactatgggcgaggacaaggaacaaccgtacaacactattctatttcaatggtaatctaggaccagcctataaggatggccgtcatgaagacacctatagcatggggattcggcaaaagctggccgctgaatttggttccacaccagataagcaggggaagcttggaaggcagcacacagccaatgttacagttacctatttgcgaactgagaagtactatgaggaactagcaagctctattttctgtggtgtcttgccaggggatggctggagtgggcgtatggaggatagcatgcttcaaggatgcattcctgtaataattcaggatggaattttgcttccctatgagaatatgcttaattacaacagttttgcagtccgcatacaagaagatgatatcccaaacctcatcagaatacttcgagtatgtgtttgcattaactcccctttcgttcggttataa</cdnaseq>

Protein Sequence

<aaseq>MQMLSWICWLSYTGKRCEEVQKVECNLPSSQEWPVGRWIVSICP AHCDTTRAMCFCGPGTKYPDRPVAEACGFKTILPKKPDDSKLTDWKTPDPDVFTTNKS KPGWCNVNPEDAYSSKVKFKEECDCKYDGLWGRFCETRVECSCINQCSGHGHCRGGFC QCDGGYFGIDCSMPSNYSVAYGMPSWLQPPMNLPDLKNISSSSINVKVVAKKKRPLIY VYDLPAEFDSHLLEGRHYKFQCVNRIYDDKNRTIWTQQLYGAQIALYESILASPHRTL NGDEADYFYVPALDSCLITRSDDAPHLQMPRDLRLRSYHTLEYYRMTYDHIAQRYPYW NRTSGRDHIWFFSWDEGACYAPKEIWNSMMLVHWGNTNTKHKNSTTAYWADNWNYIPI DRRGNHPCFDPRKDLVLPAWKQPNPAAIWLKLWARTRNNRTTLFYFNGNLGPAYKDGR HEDTYSMGIRQKLAAEFGSTPDKQGKLGRQHTANVTVTYLRTEKYYEELASSIFCGVL PGDGWSGRMEDSMLQGCIPVIIQDGILLPYENMLNYNSFAVRIQEDDIPNLIRILRVC VCINSPFVRL</aaseq>

Gene Sequence

<dnaseqindica>985..1010#1430..1630#1740..1995#2107..2319#2402..2488#2635..2769#2842..2955#3053..3300#3370..3450#3525..3756#3886..4023#gctcctccgcgatttcgagattctctcgcgtttgctcgatagcttccgcctcccccatttccttcttctccatcgaatttttcggagacctccagtagcgcaatttctctttgccgcggcggcagcggcagggcacgggcgggagcggcagcggcagcggcggcgaatcgaggggccggcgaggaccgggtgattggggccggggcgcagccggtgcggcacggcggagctagggcggaggggggaagcccggcgggcggaaagcaggttgggaatctgtctcgattttgctgcggtttgttgcgaactcatttttagcttgtctgatgtggtgaagttgtgcgtggtttttaggcatagctcgttgtgtccaggctccgggaatttgttggctccgccgccacagcgccactgcttgggggtaaagctcttgggtctctgatccaactcgcgtcgatttggttgtattttcggttgatatatggcaagaactgtggctttcagatgatggtttgaccatgcgcacaatgcgttcgacgaaatgtccatgggcattcctgggcgtggctggcgccctggtgatgctcgtcgccgcggtccatgtcttcatggtgccaatcctcccttcctcgctcgatttctttggtgctggtcacggcattggcaagccaaggaatgtgctgccaggcgttggagtggtggactcacgtctcagtgggcagttcccttctgattcgtatggtgcagtgacataccgtggtgcgccgtggaaagctgagattggcagatggcttgctggatgcgatgccggcttgtcggttgtcaatattactgaagtaagcacttatctttgtcactgaccattgcgcactgctttagctttcctcggattaatttggctgttcttctggaacagtttataggtacaaagcggtgcgagcaagactgcaatgggcaaggtgtgtgcaactatgagctgggagaatgcagatgctttcatggatatgctggtcagtcctactttgtcagctcaattaatgtgttaatcttgttaataattgatcaatgaaattgcaatttcacaagggatttcgatcactagaaagatttaatggttagaacatcaacttgcagtttaacaaggttgggttttaatcacataccattttgataagattggcttcttgttagatcattcccttgcctatctacttatgttaactgccatcggttatggcatattagtttcatttttaccagtttctgtttcttcttttcttttcctgaaaagaaaaaagaatcatatgtactgcatgctatgcatggtggaggcatctgtaccattctttgctctttttttttgttatttcttaagcttctcgttgtaacaatttaaattgtatcactgtgttgctaatctctacaaaaggttatcatatacaggaaaacgatgtgaggaggttcagaaggtggaatgcaacttaccaagttctcaagaatggcctgtgggacggtggatagtttccatatgtccagcccattgtgatacaacaagggcaatgtgcttttgtggaccaggaacaaaatatccagatcgccctgttgctgaagcttgtggctttaaaacaatgtaaggaagaatatcattgatgcttatgtcttttcgataaaacaacataagaatattatttatacttcagtaatcagtatcattgaacttctctagctcatatttttagcttgcctaaaaaacctgatgactcgaagctcactgactggaaaacacctgatccggatgtattcacgacaaacaagagtaagccaggatggtgcaacgtgaatcctgaggatgcttattcttccaaggtgaagtttaaagaagaatgtgattgcaaatatgacggactctgggggcgattctgtgagacacgtgttgaatgcagctgtattaaccagtgctcagggcatggacattgccgtggtggtttctgtcaggtatctctcaaacaagttgatcggataaaagtcatgaaaatgtgttgacagactgatttgtgtttgctaccttcttaagctataatctaattgagtataaatttctttcagtgtgacggtggatattttggaattgattgcagcatgccatcaaattattcagttgcatatggcatgccctcatggctccaaccaccaatgaatttaccagacttgaaaaatataagctccagctccatcaatgttaaggttgttgctaagaaaaaaagaccacttatttatgtatatgatttgccagcagaatttgacagtcatcttcttgaagtaagtacatatagtaagcttaattcattaaattcttaaagctttactgctgattgagataaaaagacgtgttctattgtagggacggcattacaagtttcagtgtgtgaacagaatatatgatgacaagaacagaaccatatggacccagcaactgtatggtgctcaggtttgttaagctaattactatcagagtggcacttatgatatatgttcgttgttccgtgttgatagtaaacataaatcttgttcagtagggcacattcggatctagatctgaccaatgtatgatgcaattttttcttttccatgtagatagcactctatgagagcatccttgctagccctcatcgcacactaaatggtgatgaagctgattatttctatgtgccagctcttgactcgtgtctaataactagatctgatgatgccccgcatctgcagatgccggtaacatcgatcatccatttgttgtctcgaattgtttttgttctccttcaataatttgattcttgattttagagggacttgcgcctcaggagctaccatactctggagtactacagaatgacttatgatcacatagctcagcggtatccttactggaaccgcacttctggaagagatcatatctgggtgggtattgtgtttatatgtaattaatattatgatgattcttgaatcattattgcatagtcactaattgatagtttttcaacatacgaatgagcagttcttctcatgggatgaaggtgcctgctatgctcctaaagagatctggaacagcatgatgctcgtccactggggaaacactaacacaaaacataagaattcaacgacagcttattgggcagacaactggaattatattcctattgacagaagaggcaaccatccctgttttgatccaagaaaggatcttgtgcttccagcatggaagcaacctaacccagcagccatctggttaaaactatgggcgaggtgtgtttgagtacttttgaatatttttgaaccaatatcatttagagcattaaaatatatttttcgcaggacaaggaacaaccgtacaacactattctatttcaatggtaatctaggaccagcctataaggatggccgtcatgaagacacgtatgcatctcttcatatgtttgtacaaaaatatatggccaacttgtatctaaatcttctactgcataatgcagctatagcatggggattcggcaaaagctggccgctgaatttggttccacaccagataagcaggggaagcttggaaggcagcacacagccaatgttacagttacctatttgcgaactgagaagtactatgaggaactagcaagctctattttctgtggtgtcttgccaggggatggctggagtgggcgtatggaggatagcatgcttcaaggatgcattcctgtaataattcaggtgccacaatatcattttctccatttctattattgtggatcaagggaggttataatgtgcaattgtgcatctctgagaatcatttgacctactactcataattatcttctatgttggcttaaattgtaggatggaattttgcttccctatgagaatatgcttaattacaacagttttgcagtccgcatacaagaagatgatatcccaaacctcatcagaatacttcgagtatgtgtttgcattaactcccctttcgttcggttataacttttgacacatacttggtgtttccatctcaccaggggataaacgaaacacaagtagagttcatgttgagaaatgtgcgccagatatggcagaggttcttctaccgtgactctatattgctagaggctcaaaggcagaaaagattattctctgaggaggcaccgtggtctgttgaggtgtcaaaactagacaaggttgatgatgtcttcgctactttcatacaggtaattactggaaaagcttgccagattgatctgtatttagggacttaacatagtttgctctgaccatacttacatagttacatttgccatagcaaagctttaacagacccatacttactataccacaaaagaataaatgcttgctcatgtctctcgccttttaccttcaccttagaattgtggttctgttgacatttcctatttgctgagtacgatgtttttgcaggtattgcattacaaattatacattgacccttggcggcaaggtgtcctccaaagaaaggaaaccgggttgcctgacatctgctcgaaagcttcctgaaatgtctggcagacactacaaatgtaaagctaagataggcatatatgtagttctagattcctagaaagtgacctattacctataaattctgttacattcaggaagattcaaacgttacctttggtagttcatttcttccagagttttgtcagattgacccccaggccattttctgtaaggataatagcaatagtaccttgctttcttgattcggaattgatgtatagggcacattcttt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0174300, RefSeq:Os03g0174300