Os03g0174600

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Revision as of 12:22, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0174600| Description = contains InterPro domain(s): IPR004506| Version = NM_001055664.1 GI:115451056 GeneID:4331793| Length = 7647 bp| Def...")
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Gene Name

Os03g0174600

Description

contains InterPro domain(s): IPR004506

Version

NM_001055664.1 GI:115451056 GeneID:4331793

Length

7647 bp

Definition

Oryza sativa Japonica Group Os03g0174600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:3968447..3976093

Sequence Coding Region

3968539..3968880,3968964..3969038,3969157..3969210,3969296..3969374,3969476..3969603
,3969727..3969810,3969893..3969976,3970067..3970218,3970359..3970509
,3975292..3975609

Expression

GEO Profiles:Os03g0174600

Genome Context

<gbrowseImage1> name=NC_008396:3968447..3976093 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:3968447..3976093 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctgcgcgtggtctccaccctccccgcgctccgcccgctcctcgccgggagcacgctcctcctgaacgctagacctctgctccgctcccgcctgactcggcggccgtttcgcgccgtctcgtcctccacggcgtccccgtcgagctccagctccggcgccagggacttcgggggtgtggatttcggcgatgagcgccttctgcggtgcgcggcggcggggagagcgccgctgcgggtggcggtgctggtgagcggcggggtggacagcagcgtcgcgctccgcctcctccacgccgccggccaccgctgcaccgctttctacctcaaaatctggttccaggaagatttcaggaacttttggtctgaatgcccgtgggacgacgatttgaagtacgcgcaagctgtgtgtgacaagattgatgtaccgttggaggtagtccatctatctgatgagtattggaaccatgtggtatctcacataattaacgagtatcgcagtggccgtactccgaaccctgatgttctttgcaacacaagaataaagtttggagctttcttagaagctattgaaaatttgggatttgattacatagcatctggacattatgcacatgtagttcatccatcacctgacgatgttgaagggccatcagtcctccaactttcaaaagacaaggtgaaggatcaaacttatttcctttcacatctatctcagacccagcttagaaggcttctttttccactgggatgtataacaaaggatgaagtgcgcaggctggctgctcagatggacttgcctaaccaagatagaaaggattcccaggggatatgttttcttggcaaggtcaaatttagtgagtttgttgaaagacagataggagagatggaaggagtactgttggaagctgaaactggagactacctagggacacaccgtggattttggttttatacaattggtcagcgacaaggattgcgccttcctggcggaccctggtatgtggttgagaaaggtgttcaaaacaatgtggtttttgtctcaaggaattactactcgctggataagagaaggcggacatttcgtgttggatcgctgaactggtttagcaattctggaccaacaaacaatgagcaacttaaatgcaaggtacgtcatagtcctgaatttcatgattgcaccgtgacacaagagcaaacatcagaacatggagttattttggtggtgcgtctgtctgaagatgatcaaggtttagcagctggtcagtttgcggccttctaccgtgacaatttatgccttgggtcaggcataattctggattcttgggacgaaatgaattttccagtctgtgcaagggctttagaaattgctagaatggaggataagtccagactggggaagccagtaaagataatgaacttagaacatatcgtgaaatcagaaaaggaggctattgaagtggcatga</cdnaseq>

Protein Sequence

<aaseq>MLRVVSTLPALRPLLAGSTLLLNARPLLRSRLTRRPFRAVSSST ASPSSSSSGARDFGGVDFGDERLLRCAAAGRAPLRVAVLVSGGVDSSVALRLLHAAGH RCTAFYLKIWFQEDFRNFWSECPWDDDLKYAQAVCDKIDVPLEVVHLSDEYWNHVVSH IINEYRSGRTPNPDVLCNTRIKFGAFLEAIENLGFDYIASGHYAHVVHPSPDDVEGPS VLQLSKDKVKDQTYFLSHLSQTQLRRLLFPLGCITKDEVRRLAAQMDLPNQDRKDSQG ICFLGKVKFSEFVERQIGEMEGVLLEAETGDYLGTHRGFWFYTIGQRQGLRLPGGPWY VVEKGVQNNVVFVSRNYYSLDKRRRTFRVGSLNWFSNSGPTNNEQLKCKVRHSPEFHD CTVTQEQTSEHGVILVVRLSEDDQGLAAGQFAAFYRDNLCLGSGIILDSWDEMNFPVC ARALEIARMEDKSRLGKPVKIMNLEHIVKSEKEAIEVA</aaseq>

Gene Sequence

<dnaseqindica>93..434#518..592#711..764#850..928#1030..1157#1281..1364#1447..1530#1621..1772#1913..2063#6846..7163#gagaagagaacacaaacccaatccagaggagggaggagcgccgccgccgccgccgccgctcaggcgagaggttgccggagccgccgccaccgatgctgcgcgtggtctccaccctccccgcgctccgcccgctcctcgccgggagcacgctcctcctgaacgctagacctctgctccgctcccgcctgactcggcggccgtttcgcgccgtctcgtcctccacggcgtccccgtcgagctccagctccggcgccagggacttcgggggtgtggatttcggcgatgagcgccttctgcggtgcgcggcggcggggagagcgccgctgcgggtggcggtgctggtgagcggcggggtggacagcagcgtcgcgctccgcctcctccacgccgccggccaccgctgcaccgctttctacctcaaaatctggttccaggtacatacgcgttgctcattatgttctctgctaccaccgctgatctgaatgatcgattgcatagctgagtgctctatctgtaggaagatttcaggaacttttggtctgaatgcccgtgggacgacgatttgaagtacgcgcaagctgtgtgtgacaaggtatcatcggtcaaatattagctgaagcatggagtttcgttaattgctgatgggcatcatatatttataaactagttttttcgacatgaactcagtgttccaatggttggttctgtagattgatgtaccgttggaggtagtccatctatctgatgagtattggaaccatgtggtaagactcgttggagtattttgtcaccttgtacaatgtagtggtcgcgttaatcattctaagaaaaactgtgaatgtttgctaggtatctcacataattaacgagtatcgcagtggccgtactccgaaccctgatgttctttgcaacacaagaataaagtttggtacaaacactgtactgtgataggtttccgctatgcaaatctggctgtaaattgaagtatgttttttaactttcgtcttgttggttattcttttgttgcaggagctttcttagaagctattgaaaatttgggatttgattacatagcatctggacattatgcacatgtagttcatccatcacctgacgatgttgaagggccatcagtcctccaactttcaaaagacaaggtatttgtacttcacaccaaatagctgggtttggcttataacaacaaagaaacaaaaccagatagttcgcttaacaacatttttcataagaaatcgccttattgactctccttgttttttcaggtgaaggatcaaacttatttcctttcacatctatctcagacccagcttagaaggcttctttttccactgggatgtataacaaaggttggatgatttatcaataaaggatatttaattctggttagatgctgcaagtggcattcctaattgtactaataattttcaggatgaagtgcgcaggctggctgctcagatggacttgcctaaccaagatagaaaggattcccaggggatatgttttcttggcaaggtaattgctttgccattgttaatataaattgtagtcaattctatttccttgagttatctcattataactatgaaaactctcactttctaggtcaaatttagtgagtttgttgaaagacagataggagagatggaaggagtactgttggaagctgaaactggagactacctagggacacaccgtggattttggttttatacaattggtcagcgacaaggattgcgccttcctggcggaccctggtaaggactatcactttggagatactaaactaagttaaatattgatttaccacaatatccaatggatactatcgttttgccatgtagcacacatctattcatctaatgcccatcaaattgcatctatttatctttttcaggtatgtggttgagaaaggtgttcaaaacaatgtggtttttgtctcaaggaattactactcgctggataagagaaggcggacatttcgtgttggatcgctgaactggtttagcaattctggaccaacaaacaatgagcaacttaaatgcaaggtaccagatctatgcactagcctctgtggtactgtagcatatggttgataccctttagccttttctttccagttattttttgaacttatcggctctcaacagtcaacaccagcagttattatggtgcttttgaaagatgggaatccgatgtgctaatctgaggccgatcatccttttaagctatcaatcatattgcatgcctttttcttggatttagcattcagacgtcagatagagggggtgtgtacttgtgggaaaagaattctatggcaccaagtgctacaaaacatctatagcacctcttatcagatgaaaacttgtgttggatacaaatctcaaagcatcatcttcctctctcccttctttgtccttctccttaagctaactcagtatcattaatgctgcacctggcatgcatggtcggccatggtctgtccatgttagagcagatcaatagacaactgtagatcatgcacctcatgtcaacacccccaatttaagtagcagcacggtgagaccaagagtgacaacgcctgtcatcaactagggttactgtatggtaatggcgaatcaaggttgccagagagattagtgacaaaggtcgtgggagcgacggtgggccacaggcggtctcgtcaacgtaccctataggttgcattttgttggtgaatgtcttgaagtatcaggaagatttgcctgttgattttgttccagggtgatgctacgaagatagttgatctagatgatccaggggccttagatcttgattttagagttgatacatctgtgagaagagatagaatggaagatactgatgctgctcgtagatctgttttcgatacgtgtttctacaggggtgccacggatgtttttatagcaccttgtgccatagaatttttttcccatactggtgtgtcccaggacttctttttacaagcagttcctatgttactctcttttttttttatcaaatatgaccaaattgtctcctagttgcattggttaggatagcatgcccatgctggcaactttatcttgaactatttggtgctggggtagatgagtggcttacaaatcctgttgatttctccttttagctaagccatcctgaaacagattaactctacagtaatccttattcttgaactttgggaaaatgggaaacctctgcagcttcaaaccaatgccaaagattcaacaagcttatgactccctctgtttcatattacttgtcgttctagcattcaaaatgtgtatcaaaaaacttgtcgttctcatgttccaaagcacttttagaggtgatcttccctctctacctgtttgatgaatttttgtgccaaaattcatagaaaaataataaaccattgggcattaatttgcaacccaattttacaaaatatacgagaagcgtgtctctatgacgtgtgggaccaaaaaattcaaatatcatacgatatccaaatataatcaacattggactcgttttgttgtatgttttgattggaaaataatggttccgacagaattcatatttgatatatgattagagagatataaacatttgaaggagaagatcaactagtgttaaccgtatatccttgattggtttgctgatcctcaccggttggtaattatccttatgaggtgtggcgtccaccgtcaattagccaagttaatcctcgtgattatctccagcacacacacgttctttttatctggagcacaaaattctttttatcatgcgcaggtcgttggattaacagacgcgctggcttatccagagaattaacgcgtgatttcgctggcttgcgctggaatctcggaagggattaggcgaggacgccggctgtcacctctacccttatataaggcgttgtccctcacgacgcacggagagggtgggagaaaaaacccccggcgcagaggcggctggcagaggagacgtagcagggcaagcctgctgcgtgctctgatctgatcaatcacccatacatccagaagcctatatcaatagatacacaatcacacgccgtcgccggcgccgggcgcttcacagcacgcaagcctgaaccggcgatgaaccttataccacacatacacgcacccacaaatatttgattaggagcttgatttcgattaggcaaaaggagattaaattccatcggcggcaattcgcgaggagattaatcattgccggcgacgattgtgccggtgttcgtcatcaagctaatctgcatgtgctgcacacctgataaaacatcaggggagcaaaaagatcagatgcacgccgtagtgctgcgcggttgcgcggcccggctgacagaaaagtaaagtggagtaccgatgaacatgtcgtggatgtgttgtgaacttgtagccatggatataagtattcccagcggcgcatgcacacgcacacgtcatctttgtcaagcgattaatgtgggctgcaaataaatacaaggcgagcctaaccctcgtggggggttggaccgtcgaaattatcaatatcaagtattggatgtgatatttatttgtataaacttgggatgagtttgagtcttattggcatcagaccaaccatgatctgtacatatttatattcatgccggatgagtcacgtattgcctcgtgcatatcatgtacgggagcatttcattccctctccaaattctaccgaatggacaggagcaattctcacaattcctgaagacaagcattattcactaaataaaacaatgctagccaggagggcgaggacatgcagatttaaaacacacgtcgatatcatggccgagtgtcgacgagatgaaatggccgatttatcaatatttgtgctacgtctgagaccgatgaggccagacaaagctattcattcatttcatttgtctatgaccgacgaggctagacgataccatggccgagtgccgacaaggccatgtcactatactattaacacgtctaaaacgaacgggagccggatacaccattgctgggcaccgacgaggcaaaagcaaccacaaaatctatgtttgatgaaggccggggtacatgactgggcaccgacgaggcaaaagtcacccgcttcaccaaattccctccgcacaccgacgtgatggtagtgtattgtgattgggttttggcgaaacaaagccatccgttccacattcactatattcatcgttaaatctgcacgaacctcaaccttcggcgagcaattaattttgaagacgacgatcacaaagcgcagcttaatcggaggtgttccataggctcgctcctgtggatgtaattaaccggtagcctcattgctaggcgccgagaatcagcggactgcacgcaatctccagtcagcataccttttcgcaaaatctatttcgagaggcttctcgatttagacttaacgagcgacgcggacaattacgtgagaagtactagtagcgttacagacatgcatgcgagtagtttttgctattaggttgtgcatatcttttttcttcttatgaaattttctattaaattacttatctgatctataatccgattacaccgttgtgttcgtaacgattaaatctttacaacaagatctcacatgattatattttgatgaaaaatcacaaattacttttatgatatgtctaaattacttttagatttcactaagttacttcttagacatataaaagtaaattcagtaaagcctaaaagtaatttacatatattatagaagtaacttagaacaaaatgaatgtaattttggcatgtcatttaaagtaaatccgttgtagagataaaaatatgactctatctagaaattaaattaatcagcacaaattatggaattaactaaaaacaataataaaagtaatcacctcagagcattatgaatgtataggaagtattttaatcaaatctaaaaaagtaacttatatatatgataatttgttcaatgaaaaaaggtattaattaaagttactttctttttgttataagttacttctataatatatgtaaattacttttaagctttactgaatttacttttatatgtctaagaagtaacttagtgaaatctaaaagtaatttagacatatcataaaagtaatttgtgatttttcatcaaaataaaatcatgtgagatcttgatgtaaagatttaattgttacgaacataacggtgtaatcggatcgtagattgaatgagtagtttaagagaaaattgtatttgaagtataggtggatggtgtctcttatagatggagtggtagctggtttagacaaactagctaccactagttgtgtagtcacgtccataccttttcattaagcatttctcacgaaggcaaaaggcgaacttttgcgggagccctcatgtatttgtaaacattcatgataatgaatcatgattaataaaatacaaggtttccctattttctgtgtgttcgttgttttgttttcatcaaacactacctttcatcaatgtagtcatacactaatgcagtaacaactcttattggctcatgctttggaaaaataattgagatgtatttaatgagggtaaccatgtaatcttccacatcttggtttgtgtgagatttgttagaacgacaagtaatttggaacataggggtatctaatatgtgtgtatttattttccttgacattttttaatcagttgtggctttgcactgtgcattcattaagaccagtcatatgcacctactcctatatcaaattaccaattactttatgcacatgctaatatggatcattgcattatcaggtacgtcatagtcctgaatttcatgattgcaccgtgacacaagagcaaacatcagaacatggagttattttggtggtgcgtctgtctgaagatgatcaaggtttagcagctggtcagtttgcggccttctaccgtgacaatttatgccttgggtcaggcataattctggattcttgggacgaaatgaattttccagtctgtgcaagggctttagaaattgctagaatggaggataagtccagactggggaagccagtaaagataatgaacttagaacatatcgtgaaatcagaaaaggaggctattgaagtggcatgataggcacagtccctgcagccttctcttgagtcttgactactccgtacattcgtggttctgcaaagttgcacgttaaccctgcaaaagcaagaatcgtgttgtccccaggaactccagctggttcttcaaaggaggtatggttggcgagcttgcatttctgaagagggttctctggataaaagaggcggatgaacatcattatccatgcaagaattgacctggcataaattttcagcggtaagctgccgatctggcaggaaatcacacgaagggtctcggaattccactcatgagccaaagcgtctagaactctagatccgatcgtcagttaagcattacagtatcctcttatagcagtgtatcaggagatgctcctttcatgctactactagtaccggttttatttacgttgtacaaatgttaaggttattgtaggcgaacatcgaatggtagaatttctaccattctgatcatatgttttatc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0174600, RefSeq:Os03g0174600