Os03g0193225

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Revision as of 12:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0193225| Description = Frigida-like family protein| Version = NM_001186368.1 GI:297721866 GeneID:9272157| Length = 4485 bp| Definition = O...")
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Gene Name

Os03g0193225

Description

Frigida-like family protein

Version

NM_001186368.1 GI:297721866 GeneID:9272157

Length

4485 bp

Definition

Oryza sativa Japonica Group Os03g0193225, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:4840586..4845070

Sequence Coding Region

4840719..4841405,4841490..4841662,4844351..4845035

Expression

GEO Profiles:Os03g0193225

Genome Context

<gbrowseImage1> name=NC_008396:4840586..4845070 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:4840586..4845070 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgagggcgagacgcccccctcctcctccgccgccgccgcggcccccgtcctcgccgcgctcgcctcgctccagacctactcctccgcgctctccgcattcacctccgcatggcgggctctctactccgacgccaccgcgctcgactcaaccctcgcgtcccgcctcgagggcttctccgagctcgacctgctgtgctccgccatggacgggccaggcctccgcgcgtacctcaccgagcacagggacgcgctgcaggactcgtccctgccggccctcgacgccgccctcctggtggcccccgacccggggcgcctggtgctctccgcggcggcgggcttctgccgcgcgccgcctacggaaggtgcggccaaggtggcgtgccgcctgctcgtcgacctgctcgaccggctgcgcgcgctcggcgtgaagccctcgccggaggcgcgcgacgaggccagggctatcgcggccgactggaagcggagcaagcggatcgggccgcaggccgtgcttaagaaggagacgatcgccttcctgctcctcgtgggggcgtttgggttggtggatgatgtcggcgacgcgagcgaggtgctcgatctggtcgtgtcggtgtctggccgggagcgcgccgttgaggctttcgtcggccttgggctcgatcttgagaagcacatgccagttttcattcatacaatgataaagaaaggcaaacagctggaggcggttaaattcattcaagctcttaatttggtggaaaaatatcctttattgcctgttctgaggtcgtacatcagtgatgctgcaaaagctgggaacatgatccgcatcagaggagatgattctgcttgtcagactgaagccgatgcaaaagagcgcatgctgctcggagtattgcagaagttcatcaaagaccagaagctagaagaactacctattttggaaatagttaaacagcggctggcacatttggagaagaaaagtgtggagagaaagcgagcagctagtgctgctattgaagcagctcatgaagtaagtaagaagattcagaagcaagagaagcaacagcagcaggtgcagtcagctatgcgatcacgggttccaggtaaagcagcacaaaattccttaagccaaaacatccattcggttgattccctcagtcgaccgctcatgtcgagccagagcatgggtatctcaggagtattaaatttgtaccaagctgcttcaagccagaatataattccggctattagtccgagcccactgagccaacatcccgttggcatcaagaatcagaccctgaatacaccgcctgttcagactcggtatggtggcttggctgactactatggactgtcctccggcagacctaggcccgactctgtatctcctggatcaagtgttacgagtgcacacacatcttccagatcaaagctctattctgcagatcccctggctgctgtctcccgagcatcagataagaagggttcgtcttacaactattcgttgtcaagtatgtcgacatataatcctaatccataa</cdnaseq>

Protein Sequence

<aaseq>MAEGETPPSSSAAAAAPVLAALASLQTYSSALSAFTSAWRALYS DATALDSTLASRLEGFSELDLLCSAMDGPGLRAYLTEHRDALQDSSLPALDAALLVAP DPGRLVLSAAAGFCRAPPTEGAAKVACRLLVDLLDRLRALGVKPSPEARDEARAIAAD WKRSKRIGPQAVLKKETIAFLLLVGAFGLVDDVGDASEVLDLVVSVSGRERAVEAFVG LGLDLEKHMPVFIHTMIKKGKQLEAVKFIQALNLVEKYPLLPVLRSYISDAAKAGNMI RIRGDDSACQTEADAKERMLLGVLQKFIKDQKLEELPILEIVKQRLAHLEKKSVERKR AASAAIEAAHEVSKKIQKQEKQQQQVQSAMRSRVPGKAAQNSLSQNIHSVDSLSRPLM SSQSMGISGVLNLYQAASSQNIIPAISPSPLSQHPVGIKNQTLNTPPVQTRYGGLADY YGLSSGRPRPDSVSPGSSVTSAHTSSRSKLYSADPLAAVSRASDKKGSSYNYSLSSMS TYNPNP</aaseq>

Gene Sequence

<dnaseqindica>3666..4352#3409..3581#36..720#acaaggttgagatatctctttccaccgcagcagccatggctgagggcgagacgcccccctcctcctccgccgccgccgcggcccccgtcctcgccgcgctcgcctcgctccagacctactcctccgcgctctccgcattcacctccgcatggcgggctctctactccgacgccaccgcgctcgactcaaccctcgcgtcccgcctcgagggcttctccgagctcgacctgctgtgctccgccatggacgggccaggcctccgcgcgtacctcaccgagcacagggacgcgctgcaggactcgtccctgccggccctcgacgccgccctcctggtggcccccgacccggggcgcctggtgctctccgcggcggcgggcttctgccgcgcgccgcctacggaaggtgcggccaaggtggcgtgccgcctgctcgtcgacctgctcgaccggctgcgcgcgctcggcgtgaagccctcgccggaggcgcgcgacgaggccagggctatcgcggccgactggaagcggagcaagcggatcgggccgcaggccgtgcttaagaaggagacgatcgccttcctgctcctcgtgggggcgtttgggttggtggatgatgtcggcgacgcgagcgaggtgctcgatctggtcgtgtcggtgtctggccgggagcgcgccgttgaggctttcgtcggccttgggctcgatcttgagaagcacatgccaggtaagattcactcggttaacaaatttttcggtttacaaaattgttgattttactgtggtcttatatagaacttatgtgaagaaatgttcagtcatggtcatcatttactcacctcctaactggtttaggatgatcgctggtttgcagtgttacggtgtctcagtacccttaatactgcagtactcccaactaagttttatttgtgcaacatttgctctatcaaagttgatagaggtatgttcatgctatttattttatcagtatattggacttttccctgcaagtatagccagcgtactcctcttgttaagttttagatcagtaggttccgcacaatgttctttgatgttgggtttcgtcacttctgtttatatttggagatccccagaccagcagtttgtgagttcgatgcgaacatatgagtactaagtacacattctcatccattcggttcttgtagttatgatgctgcaattttgctagggacaatctgtctttgttctttcctttgtatcgctgtctttgttcttaaatttggagatgctcatcttctttgatgtgcaagatgaaatgatgctgctttcacttttatttatattctggtcaaacctcttgtttccagatgccattacaattcccacacaaatctttcttactagagaaacatcacaaatacgtctttgtaatggtttttgctttgttttgtgtattcatccaaatgatgctaaatggaactacttttttaaaattagcacgccactcttgagttgctattactagagaaacatcacagatacgtatttgtaatggtttttgctttgttttgtgtattcatccgaattagcacgccactcttgagctgctactgcatgattcgttacttcgttagggacacttcttctttacttgccctaaattcatgacataatttatttctgtgcttgtatatccctgtgcttgtatatccttctatctagataaaacaatccagtgaaaccatttccctgtactgattaggttcattgccatattgacatttggagttcaaaggtctgtattgctttttcctcagccttttagaaagaccgatacttgaatggtggtgtccttaaaaagcaagtttgttgtttatacttttctcttatgtctatattctattgtatgctgtcttctatcatcgagttttatagcacgtttttgtgaatttaaagtggaatgctccatgatgagtatgttatcctgtcatctggttttatggtatacatggattttatgaattatgtggacaatgatgataaatgtttcacaaaatataatcttttggcactgattggcatttctctgccatgctgccattctgcaatttccatgtccatgactccatgttatatatctccattaactaagtctcttttttttctttgttaaatactgttctctaattgcactgctagttttttagtcttcttgatgcacttcaattcaatgaatcattgaatagtttgtgtttaagactgcaccgtgtgacctgtgatgatacctttgtgaaaataccatctttcgggcctgattggcaaccagccatattgtcactacaatttctgaggttatgaccttgttggtatgtacaagcgtgcagtcatttctcttctcataacttgtcagctgctgccaaatgctttcctccttccatgattcatctgcgtttctggcttgggcattgagaccaaggcttggttaagtcgtagcctaactcaattaatcttctcaccatccgcatcgagttagcccccgtgtcgattcgttttggttgtgtcttgcggtctttgcgctgcgtcgcttgctcgccactgactggatttgcatgatggcccgcgttgcatgcctggacccatcactccatcagtgaatttgcatattggtgtgaatttgcactcatgcaaattggtttatgtcgcgaagtctgcttgcatgcatgcatgcttgtgggctcgggccgtgcgagaaatgatccctacggccgcaaaccaatctgacgcagcggcaaaaatgagaaatggcaagcgagtatgtagatcagttctggaaaaatacaaaaaggttatatgtagaagaatcatgcacagagggagtactgcctatttaggcttttagcaatctttcctgtgctattttcttgatcgtgaaacagtagggggatcccctacggtatattatttatttttgaaatttacaaaggttttttataagttgttatccgttcagcatctagatctgcattcttagagggatttgcagctttcttatttccatcctgttatgttatcattatttattgcagcttatgtaagtacgttgtagtttatgcagattttggattccttttcaggagataatggatcttagaaagctcttttcaacatcaaataatgttcatgagtgctttgtaccttttagcaacgtcgatgaataatatttttcaatatatctggtgctttttattttttggctcatgtatctgtcaatttgttcacccccaccctattctgtcgtgatccatggtagctttctgttctataagtccatcatccatggcatgatgttttctgctctacatttaatgtttttttgttctttgaggtatgtccgtatgtgtgaacattaacatgaaaactctctttccaccagttttcattcatacaatgataaagaaaggcaaacagctggaggcggttaaattcattcaagctcttaatttggtggaaaaatatcctttattgcctgttctgaggtcgtacatcagtgatgctgcaaaagctgggaacatgatccgcatcagaggagatgattctgcttgtcaggtacatttatgctgcagtttcacattaggtactttaggcattaaaaaccgtataagctagttaaatcttaaaacggaactgcagactgaagccgatgcaaaagagcgcatgctgctcggagtattgcagaagttcatcaaagaccagaagctagaagaactacctattttggaaatagttaaacagcggctggcacatttggagaagaaaagtgtggagagaaagcgagcagctagtgctgctattgaagcagctcatgaagtaagtaagaagattcagaagcaagagaagcaacagcagcaggtgcagtcagctatgcgatcacgggttccaggtaaagcagcacaaaattccttaagccaaaacatccattcggttgattccctcagtcgaccgctcatgtcgagccagagcatgggtatctcaggagtattaaatttgtaccaagctgcttcaagccagaatataattccggctattagtccgagcccactgagccaacatcccgttggcatcaagaatcagaccctgaatacaccgcctgttcagactcggtatggtggcttggctgactactatggactgtcctccggcagacctaggcccgactctgtatctcctggatcaagtgttacgagtgcacacacatcttccagatcaaagctctattctgcagatcccctggctgctgtctcccgagcatcagataagaagggttcgtcttacaactattcgttgtcaagtatgtcgacatataatcctaatccataaataacctcgatatggttcttatgccccctccctctgggggactaacatgtaaattttagtttgaggccaagcagaggctgctgatcctgtgtaaattccaaatattcatatagattaatataaatgcttggct</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0193225, RefSeq:Os03g0193225