Os03g0196400

From RiceWiki
Revision as of 12:24, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0196400| Description = Protein of unknown function DUF588 family protein| Version = NM_001055798.2 GI:297600481 GeneID:4331939| Length = 62...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0196400

Description

Protein of unknown function DUF588 family protein

Version

NM_001055798.2 GI:297600481 GeneID:4331939

Length

6248 bp

Definition

Oryza sativa Japonica Group Os03g0196400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:5061506..5067753

Sequence Coding Region

5067028..5067339

Expression

GEO Profiles:Os03g0196400

Genome Context

<gbrowseImage1> name=NC_008396:5061506..5067753 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:5061506..5067753 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>cacttttttgttcttgcatctgctgctacatgcgtgcaggtgatggcgtacatagtgatctcagcggtggccgcggcgatggaggcggcgctgatcggcaagtacgggcagccggagttccagtggatgaagacgtgccacctctacaagcggttctgcgcgcaggccggcggcggcgtggcgtgcgccatcgcggccagcgtgaacatggtcggcgtcgcgctcatctcggcgttcaacctcttccggttgtacggcaacagcaacggcggcggcaaggccaccaccaccaccatggcgggcggcaagtga</cdnaseq>

Protein Sequence

<aaseq>HFFVLASAATCVQVMAYIVISAVAAAMEAALIGKYGQPEFQWMK TCHLYKRFCAQAGGGVACAIAASVNMVGVALISAFNLFRLYGNSNGGGKATTTTMAGG K</aaseq>

Gene Sequence

<dnaseqindica>5523..5834#atcgcagctatcagcgccactcctcttcaattctcacgcactctccgctccagtgacacacacacacacgaccgctcgctcgtttgccttgctgctgccttagcgagaaaccgggagttagcgagcgagccgtcgtcgccggcgatgaggcaacaacaagcgggaggagttggcgacggggtgagcccgggcaatgtccccgtgtgctactacgggcccgggggccgcgtgccgtcgtcgctggagcggcgggcgcgcgccgccgaggtgctcctgcgctgcgccgcctgcggcctcgccgtgctcgccgccgcgctgctcggcgccgaccgccagacccgcgtcttcttctccatccagaaggtcgcccggtacaccgacatgcagtccctcgtgtaagcctccctcctctcgatcccctccatgtttgtagtagcagtaacttttctttcctgcttgactagtacttagtcacttgatgatgatgaacgcagcagcaagccagcaaccgaatctttaataaactgttccaaatttgttttgcacggagccagcctcacatgcaagatgaggtggctcagagcacagtagtaatattatctcaaaattcgttgttatgtgctacagttatttgcttctcactggtcgttgataggagccaaagattcttgctactaccttttcatgaacagtgtgtgccttggcagccttgcctttgtggttgtttaatttgcgtgttgctcatcaagtaaccaatccccggtaattcggtccatgtcctagtatgctagtaccacttcctttctaaggcaagcgttagagaaagcctccttaatttggtacaccgatcacctctctccatgtgcggtgaagagcacggcgagatgaactggtgatttgttgtggtgaatggtgtgatagagtcgtaatcgtagagaagctggagagattaacggcgaggaaagagtgccaagtgcgaggagatgagatggccagccaagcgtttcgtacgtggagggagggggaagcagccacttttaaagcagcaggcgcggcacggttgggccattttactgccctgtcgttggaagggggtccctgctgcttgcgtggctgcaccaccacacgaagctcacaagtccgtttcattttagccttggctctgtatctgcatgtacacgaagcagaggctctgctgcatcaaagagggtcgtagagccgtaccaaaagttggaaagctccattaatggcacggcctgtccttgatggagccacacaggagagaagagaaagagctctctctgtgtgttttttttaaccttttcttttctgtggagtgaaatagtgcaagtttgtttttctatccggatcggtgcttgagtgtgagtagtgacgatcggcacctaccacgtggtggctgctcaatgcggtcttgatggttagatcattcatggaacgtataaatgcataacctacttctcgccgaccggcacggttggagagggttaaccctcttttctgtagaacttgtcggtagaattctggtcaaaaatgtgctcacacagttcacaggtagtagtaaggccagtccctatccaagacactagacatagtttttataaactccacatcatcaagaaactagtactactactagacactactctttcaatgcaaacatcacttttccatatttaaatttaatgctacttatctcttagagcacccgcaatggtaaagtaaggtgctatctataaaacatgtacatctcagtaatagactagattaatagtaaaccacttcaatggtatgtctacatgggtatctatagctctctaattcattgcctcgtttttctctatagactatctccagattagtagatagctttgctctctctcttcatttaatctcttctaagtaagaaaatatgctgacatggatatcttgtagagagcctatagataaccattgcgggtgcccttatgatgtcttggatattgtgtagaaaccatatctcatgcaagatctggttttcttcttttttttctcatttattcacttgccacatcatctttcattctaggtgacggcttatttaatgctatggacaccatcctagtcattgggttggcctagtagtagtagtagtgtttttaaccttttgtcagaatgattcagggttaataatggaccctccatgcaaaaatataggggcgtctttgacggtccaaaaacaagtttctatcgtaaatttctcttacgctattttgcttactgtgacaaaatcatactactagacataagaaggtactttcgaacatgaaattcaacaatatttttttatggaaacatctaaatagtattggatccatatgtggttaaaaatcttgcggattttagtccaaaaaagggtggttaaaactcaaaattggatggttaaaataagtcttgtacttctaaacagtgggggtaaaataaaaatgatattgacctgtaccattcttatgacaattttttttcataccatcttttttcatatatttagtactgtgtgcgtacaatggctttgaacatcttttctaacggaaaggagtaataaatgcagtccaaaaagaaaatgcaagtcatgcatcaatccatgatcagtgatccagcatgtatgccgagtggcgaccaccattgatccgtatttatttcttttcagatttgtgctccatctgtctacgttttgtagttactgtttcaattgctgtccacattaacacccgtaagcaggaccatcttcccaagggaccatggaatcgtgtaccgttcaaagcactgacatactattgagaagctaacctagatagctaggacacagagtataaaataaaatactactcccttcatcccaaaatataaaccacaaccactattttccaatgtttcataatacaattcacgcattcatgtatgcaattagttagcacttttctcttcttttaatttgttttttgaaatcctctctctgaagatctataatcccattgtatatatgaattgtgtttattggattggtccaaatgagaaggtgataataattcgttcttgatctatacgttagtggtggttggacgttatattttgggatggagggattactacttattaggcagctgtggaggataggccagtgatataatcatcttcttgtcttaaaaaaaagttccattgcaacatggagtaaatataactgtaataggcaccgaaaaataaccatgttttgcttaaactctttaaaaaagtaatttgaataacttcattggaaacacaagtttgatcaaggagctagctatgggacacgatggtaaatcttgctttctctgatgcaggctcttggtgatagcaaatgggatggctgcgtgttatagcctaatccagtgtgcaagatgcttggtgagcatagtgagaggtggtgtccttctcagtaggcccttggcatgggctatcttctcttgtgatcaggcaagtagctgctaatgtcacaatcagcttttcatgtcatttgtttgcttctgttattttctcgcatgtgtgtttgtcactatcaagaggtgacttttcagctatgatgactacattttgggtgtatataaatgctgatgttctgtactatagctctgaaattaggaaaccctttctagtgagatataatcttcaaggataggaaagcctttttactcagacattccatcttcataggaattaggaaaccatttctagggggtgtttgggagaggggctaaaatttagcccctctctcaaaaacataagtccctcggactaaagtttaaccccactttagtccctccaaccaaacactaccctagtcaaacatatcgtgcccaagttaataatacttactttcttatctaagagtatttgtgctacaccaccatgcacaattcatgtaatctctatagttttcctttggatccttccaggttgcatagaactgattggtatcacagtaacctatcaacacatatatcccatgtcagaagaagcaaaggaaaaacataaaatacatatacatatattttaaagttcagggtatgaacttacatatagaaaaagtatctatctttgatatactttcctcctgtttcaaaatacttgatatactagtaatttcatagccagcagaggtgatctcaaccattgatttataagttatactaccattctactactatcagttgatgaggtgatagtctagacagatacaatccattggattagaaagaaatgaacattctagattgatttctattactagtagagaccatggtaaacatctcatttttactattgaaatcaaatttaaaagtttgaccattgatattttcacattattcagtaagtatgcattgtaactcacatggttacattgttgtgcaacgcacatcgacgaaactgtacaatattaagtattcacaaatttagtcataaaaagtagtggccgaaatttgtacagtgaggtcaatgttaagtaaattagatattgacggattaattgaacctttcatttgtggcgcattaaacattggtatctaacataacagtacagcagctcacatgtcacgatcaaaccgtgtaactagatattgatatgtttggtcaaaatcgatagactccctctcatttcaaattaactgtagatgttgattaggtttattttagctttgaccatcaataaactttaaacgtctagatcaatatgtacgaaagtttaatgagtatatttaggatgcaacatacttagctaatatagaatactttcaaatatttatacattttcttcaaaagaaaaaatgagcggacaaaattttaatttgatagtacccagtgaccaatatttgaagatggtgtgggtaccattgtgagaaaaagaaagaacgttttaaatagcagctggaatagatgagcagaatgcaatatatttttcattgattttattgtaattgaacacttttcaagctacagcaaaaatattatgagtagagtgttagtacaatggttgctcctgctagcaataaatgtggctagcctgtataacagcatgtgcttttgctgtctgaattcagaatcagcgttaccatcaacaagcagtgagatgcacacaaagcactgttagatgtttttttttaaaaaaaaagaagacctgtttggtgttagttggtgatatcagaaccatcacggtatagcttggtgttaatgctagagcactagatcgttctgttgcctattctagcattaaattatcagaatacatcgtactctaagctccagggctgtgtccatctgaaagtgacaggagcagtttttacttcagtacgtcattatctaagtttctttacgtcattatcttcgtttaattactccgtatacgcggttgtaacgtttatgatcaatgctgatcgtgttccgtctgaattcgtatggttcttttgacttcttctccaaactgtcaataacacttttttgttcttgcatctgctgctacatgcgtgcaggtgatggcgtacatagtgatctcagcggtggccgcggcgatggaggcggcgctgatcggcaagtacgggcagccggagttccagtggatgaagacgtgccacctctacaagcggttctgcgcgcaggccggcggcggcgtggcgtgcgccatcgcggccagcgtgaacatggtcggcgtcgcgctcatctcggcgttcaacctcttccggttgtacggcaacagcaacggcggcggcaaggccaccaccaccaccatggcgggcggcaagtgaagcgagccagaccaagctgttgcttcttcttcctcctctcgctgctgtactgctgcctagctgcccgtacttctctctcagctctcgtaggttttaacaccacaagtagccatggccaccaccatttgtgttttgagcttttgggacacgaccggtgtatatgatgtgaagtgatccgcggggggggggggggggggggggggcgtgtttgtagtattatatgatactgtaataaacaagcgagaaagcgatgtatcagtgtggccgctggcacgatggcagcagggctagctaggcaaatttactcggttaggtgctcgctgctgctgctgtgacaacctttactctgtttggtgttccaacttccaacttggaagccatttatactggctcgaggcatgtggtgtttcaatt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0196400, RefSeq:Os03g0196400