Os03g0201100

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Revision as of 12:25, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0201100| Description = Similar to Cyclophilin-like protein PPIL3b| Version = NM_001055830.1 GI:115451388 GeneID:4331972| Length = 4013 bp| ...")
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Gene Name

Os03g0201100

Description

Similar to Cyclophilin-like protein PPIL3b

Version

NM_001055830.1 GI:115451388 GeneID:4331972

Length

4013 bp

Definition

Oryza sativa Japonica Group Os03g0201100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:5324672..5328684

Sequence Coding Region

5325435..5325623,5325722..5325832,5326099..5326387,5326487..5326743,5326835..5327196
,5327287..5327362,5327458..5327547,5327630..5327644

Expression

GEO Profiles:Os03g0201100

Genome Context

<gbrowseImage1> name=NC_008396:5324672..5328684 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:5324672..5328684 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggtggggtttggcaatccaagaactcaacatcaagccaaagaattggagagaattgctaactgatgagccctttacacgaaatgacttgataacaattcagaatccaaatgcggttgatagcaagatcctaggtgaatttgaccatgtcaagaaaggcctcaaacttgaagatgaagagttgcaacgaatgaaaaatgatccaacctacaacataaatatttctggtgatcttaagcaaatgattaaggaacttggaactgaaaagggaaagttagcttttttgcatggtgggggagggcagaaagctcaaaaggaaagagctgctgcacttgctgctatattggcaaaaaaggagaaggatgactcaaaatctggcaaagaacctaaacctcatcagcctttcagtattgtagatgctgcttctgcttctgttcatggcagaagtgcagccgcagcaaaggctgctactgctgagaaaacagctgctagaatagcaatgcacatggcaggagatcgagctcctgtaaatgctaaactggttaaaagccgttacaccacaggagcagcttcacgttctttcacatcaactgcctatgatcctgtcaccaaaaatgaacttgagtatgttaaggttgaaaagaatccaaaaaagaagggatatgttcagttgcataccacccatggtgatttgaatttggagcttcattgtgatataacacctcggacatgtgaaaatttcctcacacattgtgaaaatggttactataatggtcttatcttccatcgtagtatcaaaaatttcatgattcaaggaggtgatccaactggcacaggaagtggaggggagtccatatggggtaaacctttcaaggatgaactgaattcaaaacttatacattcaggaagaggtgttgtcagcatggctaattctgggcctcataccaatgggtcccaatttttcatcttgtacaagtccgcaccacatttaaatttcaagcatacggtatttggcatggtggtcggtggcttgaccactctttcggctatggaaaaggttcctgttgatgatgacgatcgaccattggaggaaataaagatattaaaagtaagtgtatttgtgaacccttacacggaaccagatgaagaagaagaagaaaaggcaaaggaagaggagaagaaaaaggatgaggattatgataaggtgggatcatggtatagcaatccaggcactggcgttgctggttcaactagctctggtggtggcgttggcaagtacctaaaagctcggacagctggctttgctgatgtggttgcagatgattcaaacaagaaaagaaaagcgagtgtgtctaatgtagaatttaaggatttctctgggtggtag</cdnaseq>

Protein Sequence

<aaseq>MRWGLAIQELNIKPKNWRELLTDEPFTRNDLITIQNPNAVDSKI LGEFDHVKKGLKLEDEELQRMKNDPTYNINISGDLKQMIKELGTEKGKLAFLHGGGGQ KAQKERAAALAAILAKKEKDDSKSGKEPKPHQPFSIVDAASASVHGRSAAAAKAATAE KTAARIAMHMAGDRAPVNAKLVKSRYTTGAASRSFTSTAYDPVTKNELEYVKVEKNPK KKGYVQLHTTHGDLNLELHCDITPRTCENFLTHCENGYYNGLIFHRSIKNFMIQGGDP TGTGSGGESIWGKPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFK HTVFGMVVGGLTTLSAMEKVPVDDDDRPLEEIKILKVSVFVNPYTEPDEEEEEKAKEE EKKKDEDYDKVGSWYSNPGTGVAGSTSSGGGVGKYLKARTAGFADVVADDSNKKRKAS VSNVEFKDFSGW</aaseq>

Gene Sequence

<dnaseqindica>3062..3250#2853..2963#2298..2586#1942..2198#1489..1850#1323..1398#1138..1227#1041..1055#aaacgctcctcgccgtcaaatctcccctctttctcgccgccggcgagcagcagaagcagcggcaccagcaccaccggctgtaggcgcgatcttgtaggctcatcggagatggggaagaagcagcatagcaaggaccggatgttcataacgcggacggagtgggcgacggagtggggcggcgccaagcagaaggaggccggcacgcccttcaagcgccttcccttctactgctgcgcgtaattacccttcctctactgtttttggaactagccggaagggagattttcctccttctgtgtattctgctagtcattactattctgattagggtttggggagagcctgagcttgtagcttttcttatttagtgcataaacttcattattgcgcttcctgttgatcttttagttgatatgttaccagttaaggcggttagcaaagtatagtaatttctttgtggtcaacttcagtacttgatgatatttaacctttagattatgttgattgagcttagtagtggatggatctgtataccaaatgttaatttcctccgttctccactgattataattatttggtttggtggtttaggcttacgtttttaccatttgaggatccagtgtgcacagcagatggaagcgtctttgatttgatgtaagttcattgttcttctttgtatatgtttttggagaaaatattagagactgagatcctgaaaatcctgtgttggctgtgtataaatgtaggagcataattccatacattaagaagttcgggaagcacccagtaacaggaacaccactcaagcaggaagatctaatgcctttaacattccacaagaactcagatggtgagttaaaccgtcgcaaaaatttcagagtatcttgaaccaaatgttacggtacatgtactcttctatctcggacattaaatatctgtcctttttcttgcaggagagttccagtgccctgttttgaataaagtttttacagaattcacgcatatagttgctgtaaagactactgggaacgtcttctgttatgaggtggggtttggtgagctttttcaagtgaacaatttagtattatggacctatggtactttttagctcatgcattcttgactcataaaatgcaggcaatccaagaactcaacatcaagccaaagaattggagagaattgctaactgatgagccctttacacgaaatgacttgataacaattcaggtatgtatttagaactgcatgtctactgtactcagtgtcaatttgttgacatttagccctgtaatctaattatattcatcttatgaactttgaagaatccaaatgcggttgatagcaagatcctaggtgaatttgaccatgtcaagaaaggcctcaaacttgaagatgaaggttgattccggtccctctttcactcttacttctttcatattgctatttcctagttaacttacatgctttatctgtatgactgttgctcagagttgcaacgaatgaaaaatgatccaacctacaacataaatatttctggtgatcttaagcaaatgattaaggaacttggaactgaaaagggaaagttagcttttttgcatggtgggggagggcagaaagctcaaaaggaaagagctgctgcacttgctgctatattggcaaaaaaggagaaggatgactcaaaatctggcaaagaacctaaacctcatcagcctttcagtattgtagatgctgcttctgcttctgttcatggcagaagtgcagccgcagcaaaggctgctactgctgagaaaacagctgctagaatagcaatgcacatggcaggagatcgagctcctgtaaatgctaaactggtacactttcgtatcatctcaatgtattttgtctggtttgtgttacatacgcagtggattttctctgatggagatgattcaatgatttcaggttaaaagccgttacaccacaggagcagcttcacgttctttcacatcaactgcctatgatcctgtcaccaaaaatgaacttgagtatgttaaggttgaaaagaatccaaaaaagaagggatatgttcagttgcataccacccatggtgatttgaatttggagcttcattgtgatataacacctcggacatgtgaaaatttcctcacacattgtgaaaatggttactataatggtcttatcttccatcgtagtatcaagtatgttctgatcacattagtcctttttacctagtcatttgttttatgcatacttatggtcatatctaaatcttatctgtttaataattccttttacagaaatttcatgattcaaggaggtgatccaactggcacaggaagtggaggggagtccatatggggtaaacctttcaaggatgaactgaattcaaaacttatacattcaggaagaggtgttgtcagcatggctaattctgggcctcataccaatgggtcccaatttttcatcttgtacaagtccgcaccacatttaaatttcaagcatacggtatttggcatggtggtcggtggcttgaccactctttcggctatggaaaaggttcctgttgatgatgacgatcgaccattggttagtgtgattgttacttttacttccatctgcatttttaactcgattttaaacatgaactatcataaattttgttgcaaaacagttgctataatatatggatccattggcttttatgcaattgcagtatgctgctttttaaggattgctttttgtattcatttatgttttagctttgatttgctgtactggtttatactgctgttttctactcttcttccggtcttcttttaacatgtgattcttatttcttccttaatctacaggaggaaataaagatattaaaagtaagtgtatttgtgaacccttacacggaaccagatgaagaagaagaagaaaaggcaaaggaagaggagaagaaaaaggatgaggattatgtatgttgcctatcatcttgtttctgtaatgaacttgtgatcatgaacttgtttcatttatttatatcatttgtttaaaattttacttggtaattcaggataaggtgggatcatggtatagcaatccaggcactggcgttgctggttcaactagctctggtggtggcgttggcaagtacctaaaagctcggacagctggctttgctgatgtggttgcagatgattcaaacaagaaaagaaaagcgagtgtgtctaatgtagaatttaaggatttctctgggtggtagattcctgatgaacctccccttctctcagaagaaatggctagtggaaacttcggtagcagcactgtggcatttcttcaatcttctgctatggatttaaactaagatgctcaaggtccacaattaagattctctgtaagcagatccgagttgagtaacatgatccactctgggtgggtgttttgcggcaaaaggtattactagattcttctactgtaaacttatgttgtgtcttgtataaatcaaagccatgttgttagcggtttcttctatacaacaacagacttcccaagcaagttggtgtaagctagaaatggaacttcaattctaagcctttagcgtttcttatgttagagcaagagtcaaccctgatgaaagtatgtgcatttgactgtcagacagtatttctcgtgactatgaaaagagagttttctcaattttaccttattcttttctctgcagagttgcacactgagctataagagggatgcttgggacttaggaaatttgactggttcaataactggaaattcatgcttccatcagtctgtgtctgaattattacaaataaaacttgagagggccgagccgccgaggggatcttaactttccctcgttgattcgaaaagccttttactgccacaatccgggactgctgatattgttatggcaagagttatgctcaatctggaactgttgatattgttggttcattgcatgtttataccgataaatttgtatgccaataatcactgaaatcaacttg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0201100, RefSeq:Os03g0201100