Os03g0216700

From RiceWiki
Revision as of 12:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0216700| Description = Multi antimicrobial extrusion protein MatE family protein| Version = NM_001055921.1 GI:115451570 GeneID:4332069| Len...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0216700

Description

Multi antimicrobial extrusion protein MatE family protein

Version

NM_001055921.1 GI:115451570 GeneID:4332069

Length

10936 bp

Definition

Oryza sativa Japonica Group Os03g0216700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:6159182..6170117

Sequence Coding Region

6159463..6159505,6159636..6159757,6159862..6159957,6160053..6160169,6160273..6160344
,6160469..6160632,6160720..6160820,6160925..6161021,6161140..6161275
,6161382..6161575,6161939..6162145,6163243..6163364,6163467..6163711

Expression

GEO Profiles:Os03g0216700

Genome Context

<gbrowseImage1> name=NC_008396:6159182..6170117 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:6159182..6170117 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctggtctgaagaagatggaggaggtcacagcagctgctgctgctgttgcagcgagcagtacggccgagaagcgtgcggccgccgtcgtcgtccccgacgcggcgctgacgatgaacggtgccgccggcgcggaggagaagacggcggcggctgcggcggcgccggaggatctgccggcgccagccgcattgtccggctggccgaggagggtggggctctacctcttcgtcatgaacatcaggagcgtgttcaagcttgacgagctcggatcagaggtgttgcgcattgccgtgccggcgtcgctggctctggcggcggatccgcttgcttccttggtagacacagcgttcatcggccgcttaggttcggtggagatagctgctgttggtgtttcaattgccatatttaaccaagtatccaaagtctgtatttacccccttgttagcgttacaacatcatttgtggctgaagaagacgctatcatcagtaaatgtatagaagaaaacagcagccaagatctggagaaagcttctcctgtggattcagaaaccaacaatctgcctgtatctggtcctgataaggtagaatgtgtcaattcatgtattcccaccgagtgtacaaatccctccgatcaagggtgcaagagaaagtacataccttctgtgacatcagcagtaatagttggctcatttcttgggctacttcaggctgtcttcctggtcttttcagcaaaatttgtattgaatatcatgggtgtcaagaatgattcaccaatgctaaggcctgcagttcgctacctaacaatcagatcacttggtgctcccgccgtattactgtctctggccatgcagggtgttttccgtggtttcaaagacacaaagacaccattgtatgccactgtggttggagatgcagcaaacatcatactagacccaattttgatgtttgtttgtcacatgggtgtcactggcgcagcagttgcccatgtcatttctcagtacctgataacgatgatactgctgtgtcggctcatccggcaagttgatgttatcccacctagccttaaatccctcaaatttgggcggtttcttggatgcgggttcctgctgcttgcaagggttgtggcagtgactttctgcgtcacgctggcgtcgtcgttagccgctcgccatggacctaccatcatggcggccttccagatctgctgccagctctggctcgccacatctcttcttgctgatggacttgccgtcgctgggcaggcagttcttgcaagcgcattcgccaagaatgataaaggcaaggttgttgttgcgacatctcgtgtactacagctgagcattgttcttggcatgggtctcactgttgtgcttggggttggcatgaagtttggggctggaattttcacaaaggacatcgacgtgatcgatgtcattcacaaaggcattccttttgtcgctggcacacagacgataaattcactagccttcgtgttcgatggcatcaacttcggagcatcagactacacatactcagcttactccatggttggtgtggctgctatctccataccctgcctagtatacctttctgctcataacggattcatcggtatatggatcgcattaacgatctacatgagcctgaggaccatagctagcacttggagaatgggggcagcaagggggccatgggtgttcctccggaagtga</cdnaseq>

Protein Sequence

<aaseq>MAGLKKMEEVTAAAAAVAASSTAEKRAAAVVVPDAALTMNGAAG AEEKTAAAAAAPEDLPAPAALSGWPRRVGLYLFVMNIRSVFKLDELGSEVLRIAVPAS LALAADPLASLVDTAFIGRLGSVEIAAVGVSIAIFNQVSKVCIYPLVSVTTSFVAEED AIISKCIEENSSQDLEKASPVDSETNNLPVSGPDKVECVNSCIPTECTNPSDQGCKRK YIPSVTSAVIVGSFLGLLQAVFLVFSAKFVLNIMGVKNDSPMLRPAVRYLTIRSLGAP AVLLSLAMQGVFRGFKDTKTPLYATVVGDAANIILDPILMFVCHMGVTGAAVAHVISQ YLITMILLCRLIRQVDVIPPSLKSLKFGRFLGCGFLLLARVVAVTFCVTLASSLAARH GPTIMAAFQICCQLWLATSLLADGLAVAGQAVLASAFAKNDKGKVVVATSRVLQLSIV LGMGLTVVLGVGMKFGAGIFTKDIDVIDVIHKGIPFVAGTQTINSLAFVFDGINFGAS DYTYSAYSMVGVAAISIPCLVYLSAHNGFIGIWIALTIYMSLRTIASTWRMGAARGPW VFLRK</aaseq>

Gene Sequence

<dnaseqindica>10613..10655#10361..10482#10161..10256#9949..10065#9774..9845#9486..9649#9298..9398#9097..9193#8843..8978#8543..8736#7973..8179#6754..6875#6407..6651#agcagcagcagaagcggcagcgtactcgtcgatcggtgcaggtccgtgcaagtgcaagagagtgcagtgcggtacagcgcgcgtgtggttgctgagcacttgtgctgcgcgggctacctacctgtttcgagccaggtttggttcaggtacgcgcgctgctctgcttcgctctgctccgctcgtttcctccgtttatgcgtgcatgcgattgcatggtcttctgcttggtttgctttgggtgcgttggatacttggatcagctggccgttgcttttgctggcggccgttgcgatcaaactcccaactccagcacacatagccggtcaggttattagcactggactgctaaactcgagcgcttcttcgaacttagtgcggtgccctagcgattatacgtgacatacatacatgtgtgcacgtcgatctcaagcaccgcgtatgtactgatgatcaccagtcacgtacgagcgctcgtctacatgaatgctactgactgtgaccgccgactggtgatgatgccgtatgtcgttttctaatccaagtaatgtgtaatgacattaaagaaaacgagatttagagggagagacgtccctccaaacattttttttaagatgaaattatgacatgttggagatcgaacacgtgatcttaggttgaaaccacataccattatcactggatctctaatgtgtaatgacatagtacatcattataataatagagcaagtaatcaaccaatggcaaccactgagaacatatacgaataggctgcattcagttgcgctagctgcggctacaacagttgtgaatggctgcagcgggcagccggtttgaactgccgcaactgtagcggttgcggtagcagagccatagtactggactatatattactactccttcggatcgtaaatatttatttatcacacttatatggttatcatacatcgaataaatatgttaattttctaaacatctaaatatcaagaaaatattaatgctcaatgttttaaaatttcacttgaaacggatctaaaacgacatgatagtttttttttttaccaaagggagcagtaactcattaacagaagctaaaagaacacaaaatctcttaaagccagttatatttgaatcctaccgagtagagagttatacacaaacaactgtcaccgtatgactggtgtttggtgccccattaatttatcataagttaattaagtatctgatcatatgatttagttttgagggaatttattacctatcaagtgaccaatatgagagaatttaattcttactgcaagaagtttctaaggttgtttgtctcccgatataaagtacgttcatcttgttggtgttatatattataaaaaaagaaaaaactatcttggtaagtggtgcacgtcaatgggccggtctgtatattgtagtgcctttcctccgttcatttcgaccaaacactcaaaagttagcaggcacgatctatctagatggtattagtcctccaaagtcgcttaattaatggtcatgacgcagctcgcatttcattgcttttgttgaagatatatgcagattgtgatatatgtacttttccaaaaaaaaaagtaaacaaaaaaaaagtgataccttaatcatattcactattcagatagtttagttattgttttgtcaatgtgttagttcctgccaattttattttggtgctctctcgcaggtgtgtttgagaggagaaaaaaagagaagattaagaaaacacacaaaataaggtgatatattagcgcatgattaattaattattaactgttttaaatttcaaaaatggattattatgattttttaaagcaactttcctattggaaatttttataaaaaatatactgtttactagttcgggaagcgtgtgcacggagaacgagagaaatctcatctcgttcaccagctgaatacaacttgacaacacaataggactctctattatcgaccatgcaacttaatctgttgccaaaattaaaagaaaaaaaaatctaaaatgaagtgtggaaatcatactgttacatgccgtgtggaactctgaatctctgatgacaagcattgaagcatctgatctttcaacaaagaatgttaaatcatctacctagtagaggaattttcttttatgtgtaaactttatggggaactaagatgcaaaagaatacgatatcatttgttagaatttttaaggatgcttggcgatattttgttaacttggcaatgttttgttaactttgctctttcttggaaggagatctgcatgcaaaacctagtttaacccaagttttacattcatgtatcttttgcagctagcgtattatagtacagagactccacttcgatccacaaaattaaggccagacttagcaaggtactactcctgccaatcaaattgagaaagagcactccactaactcttgtatcattggagtaaattatgtccatgcttattacaaactgctagtggctgaccagtaacattatcctggcactagtaggagactcggtggtgaccaacacatagtttatgtttcatgcttaactcgatgcatatagtcacagaagactgccttttgtcggttcaaagtttatggctgtatacccgaaaaaaagttacagaattgtagtgctgtgaaagtatctttcggtggcaaaattgtaggtaacattcttattttcaaatatccaaaccatacatttcagccatagctgcaagacaagcatacatatatttcatatctgaatttggacatagggtggtagctgttctcttttcttcactgtcattggaaagagtgaggaaggaaacactagaccacaatgggggaaaccaagaggatcatatcttttcatcctcccaccttgaagaacgggaggatcctaataagctatactagtagagaaagaagagagaaatggaaggccagatggaacgagacgagatgcaactacacacctcgagagagcctctaccctactgcaaatcattcggttgtagatttatggcaaaatttcgttggacctcgcatcaaaatgggttgattctacacatgcgtcactgatactacaaaaagacactgatgcatcaatcaactcgcgttaatcagtccatttcttgccgcgtgaaattgattcaaacctcgcattaatccacccatctataggaagataaaggaactaggttcaatgaatctgaagaattccatttgtcatcccaacatccgaggccaccttctcggagaatcttcatactgaatttttatcaagaccttacccatcctaaagcctagtcagcaatggagccaaatccccttagtgctggccttcttcccatgctcccttgccgcgttgatcgaatctccagtagtatagtctccctgtctggactgaaaattttctggaggatttattcggtttcttgcaaaattataggaaacgtatcctttcatatacacagcaatgtcccttttagagctaggagaacattctaagcttaaattctgttgcatcacaagttcagttacattccaacagggcaaccaaaacaggagtttgctgcgtaacacacattcgattcaggaaacaatccctgattcagcttttcttacgttcctttctgaccctgaaccatatcaacagcgactcaagaaaaggaaagctgtaatacggtaagccggtaattaaggcgatggagttgtatatatcagcatcagaacctaccaccaaaacatcatcagtccacttcacttcagctttctgaacctaccccggagcttagcattgtccacaagcaaaaaccttctttagcaacaagacgaagttgttcggcatttcgacttatgaacacatagtgatcagttgatcacccttattctgcaaaatatcccaacgtactatccgcgatggcaaaagcacatggatacaagttttttttttccattttgaagattggataagacttaagagtggtaggttgtctcgtttattttcctcctgaagttcagcagaagaacagaatgtgaaggacactagcgcggagattcgaagtcaatagtgcaaagctataactctccatatatatttagcaaataagaaagttcagataagattgaagagcataaccggtataacgttttcctacaagctgaagctgatattgaagtttagaatttgattttaggattaattgtaagaatttatttaacattttcgttacctaactccctttttataatgctattagttacatgctcgtacgttgtaatggtcaaaccaatataattatggatagattgggagctcgtaagttacgagccaggcccatataattagagaagaacagtggttactttttgaatatggacgtcccgcgtgcattgagaggaggggatgaaaggagaataactccgcttttaagatagtggagataagaagataggtaaaaagtctacccaatgttattctgaccaataatagagaaaaataacgaatctcccactagggaggaagttaaaagcacctataaagtttggccagtaactcgtttggcactaataatccaagaatcattattttgatcacaaatttaacgtttattgttagatgctgccaaatatataaagttccaatagagttttgaatctaatgcaacccttcccctcctaaaaaacagtggaagtttctctttatatgttttcttatcatgtttttctaagtatgggaaattacgtgagtaaaatagaaaatgtatatacagttgactatgggtcatattatagtgctagtgtgctactatcatattggtgtaacaagtacggttttgttttcagccatatgcattagagtaacaaatgtaactatgcatgctttaaaatataaacatatattataaggtttggttctctaccctgccaaattttggtagggtagaaatggagaaggtgttatttagtttgatgcagaattttaagtcctgtgggataataagatatgagtaaatgctcatattatagagaatatagattttgtataagagctatttggtatgaactaaattaaattttagcattaccaaattttaacatgttagaaaattacagaccactaaatcgttcttacattagaaaccacttattatatgatgatagtaactttgtaacctaccctgaaaggtggctggaaagagaggaactgtccaatcggtcactctcctgctatagtgctatcttcatatttccatactttttcttaggtgcccaaagcctccaaccttctcttacccaaataataatgatgatgatgataataataaactgtacgagaaatcaggtgtaactgaaaagcagagtccatggaacctcaccaatctcttcatcctcttttggtcaaaacaaggtcctgattaaatctctcaaattaagctgacccagtcacccagcccatgctgctcaccggcaaacctgtggctatcaccgatcgccacagcagtacaagtgatcgagtaggtgacggacaggcaggcaggcaggcatgctgacagcttcgttcgagcctctgtaacggcggcatggtgagcggctgccgtctgccgggcgccgaccgggtcggtcgacactgacgccggcgtccgttgcgcctttagaccacgcaggcgtaacagccgccatcaatacaatacgcatcaccccctgccacccaactccgtccgcacgcaacggatggctgcgcggcgcgcgctcgctggtgcaccccggatgaggatcctctaccataatgttactacgtacgttttcccgggccgacggcgcggcctcgggtcacgtactcgcgttcccgcctagctagtgtgctagcagtagaattagcccctcgcaccgtgcaacctggcagattttgacgggcgccggccggaggacgcgcgcgcggttatttaagcgcgacccgcgcacgcctcgttgcctcgcacagggcgcgctcgcttacgcttaagcttacgctgcgacgcgtcccccctgtgccgctgccgccgccgccgccgtgctttctgttttccgcccgttgcttgcatcctcacgcgcgtgcgagagggggggcgtacggatttcgttggttgtaaccgactggcaccggtagacacgttaccgccggtggcctctggcacacctctcgccgacgtcgtcgtctgctgatcgtcctctgccgtgttgcccctgtcgcagctgctgacgtcgtgataagcggagcgagcgcctcgctgcctctgagagaggccggtataagtacgggcgcgtctggctctctgcttggctgtgagcaccgcgagcacgtacagctccgcctcagacaagagcagaacacgtacgtttccccgcccggcaccggcatggctggtctgaagaagatggaggaggtcacagcagctgctgctgctgttgcagcgagcagtacggccgagaagcgtgcggccgccgtcgtcgtccccgacgcggcgctgacgatgaacggtgccgccggcgcggaggagaagacggcggcggctgcggcggcgccggaggatctgccggcgccagccgcattgtccggctggccgaggagggtggggctctacctcttcgtcatgaacatcaggttggttcgtcctctgctattaccatggcagtaacaaatcgcttccatttctcataatctctcttgcaccatggctcattcttgtgttgcaccaccacacaggagcgtgttcaagcttgacgagctcggatcagaggtgttgcgcattgccgtgccggcgtcgctggctctggcggcggatccgcttgcttccttggtagacacagcgttcatcggccgcttaggtgagcatgcgtcaccctgacatgtatgatttctctgacgttgccatggctgcatcttgttcacctgtttagtaagttccatcaacacagtgttcatacttaatttgctcggtatagataagtcatacagagggatttcttccaaatgtcagtgctaattatcagacaaatcatacaattgattttacaaatatatcgagcttgttggtactttatacttcatttccattttggtaagtttggcagtgtaaccaacttagtacagggatgtccctttccatttttttaagagcggcaatgtcgttttcatttgtatatatgggtggccaattgaataagtgggtgccgaacgccaaatacttccaacaaatgtgctctcgaattattcattcatgtttgctaatggtgcctagccgattcttgtcttttgtcaatattgacaagtcaataagatcttacctgcatgactccatgtagctgttactgatgccataatgttccattttgttctttctatcctttgatcaagtcagatatatgtttttttatatgtatttatattggaggttttattgtaattttcttatttatatcctccagtccagttagatatatatttttcttatataagagcttttaatgtaacggtattcttcttgtcatatgatgggtttctgttgacaatactagtttttatttgtttctttaagtattgcaaaatgtcgtttctgagttttcatttgcatgctgagttcatcctttttatctcattacaattggttggtcaggtacatgctgagttcatcctttttgttttgtcttttacaacaaacagtccatctgtttccttttcgtcaaatatgtcatggtatctctattttcttctttcctatttttaatatgctcccttttctttacacaaaattcatatagttgttcacttttagtatgtctgataagcatatttagattgcttttgcgtgttgaagttatttcaaaggaatagtttggaggatcaatttgttttcagaaaacaagcagctgctgttgatctgaaacttaatgccgtgaaatatttgtacaattgatttggtcaggttcggtggagatagctgctgttggtgtttcaattgccatatttaaccaagtatccaaagtctgtatttacccccttgttagcgttacaacatcatttgtggctgaagaagacgctatcatcagtaaatgtatagaagaaaacagcagccaagatctggagaaagcttctcctgtggattcagaaaccaacaatctgcctgtatctggtactgatttgtcggaacatttttgagtttcagaattttgaatagcagtaacttaggccccgttcttttatccaaccagagttggatgaagattaagattttcgttgcacacttttcaaacatctaaacggtgtgtttcgtgcgaaaactttatatatggaagttgctctaaaatatcatgcgaatctattttttaagtttgtaataattaaaactcaatcaatcatacgttaataccacctcgttttgcataaaaaacttaatcttaatcttcatcttcatctgcaggagaaaagaacaccgccttaattcaccacaaatctgaactcgctatttgtttattttgtcaaactttgtttccaggtcctgataaggtagaatgtgtcaattcatgtattcccaccgagtgtacaaatccctccgatcaagggtgcaagagaaagtacataccttctgtgacatcagcagtaatagttggctcatttcttgggctacttcaggctgtcttcctggtcttttcagcaaaatttgtattgaatatcatgggtgtcaagaatgtaagtactatttcctttatctcattctttaagcttcagttactcgtgtactttgtgtgactccttgatcctaactcattttttgtttacatcacaacattttcaggattcaccaatgctaaggcctgcagttcgctacctaacaatcagatcacttggtgctcccgccgtattactgtctctggccatgcagggtgttttccgtggtttcaaagacacaaagacaccattgtatgccactggtaagaacatctactgatcatgtccttattttggttggatatcaactttgattacagtcaggaagaatatttgaagtttaatgtgcctgacattgctaacgtttcttgtttctttcagtggttggagatgcagcaaacatcatactagacccaattttgatgtttgtttgtcacatgggtgtcactggcgcagcagttgcccatgtcatttctcagtaagtttcagtgtattaccaccagtttcagcatcatctacagctcctgcatttcatttcattgatcaatttctcctaacttttctcacttctcgttattgcaggtacctgataacgatgatactgctgtgtcggctcatccggcaagttgatgttatcccacctagccttaaatccctcaaatttgggcggtttcttggatgcggtgagataccattgggatactgaaactggataacatctccttaactgaaccttgagaatgatactgaagtctctctttttttttcagggttcctgctgcttgcaagggttgtggcagtgactttctgcgtcacgctggcgtcgtcgttagccgctcgccatggacctaccatcatggcggccttccagatctgctgccagctctggctcgccacatctcttcttgctgatggacttgccgtcgctgggcaggtcagattaccatgtcctaatctcatatatgtctaatctcatatatgtgttcatagagcagctgtttcagactttcagctgtgttcggttgttcatcgatctgtaattttcctcatggttgcaggcagttcttgcaagcgcattcgccaagaatgataaaggcaaggttgttgttgcgacatctcgtgtactacaggtcagtcacagtttgatatttcagaatcttgctcctgtcacttctcctttctactgcgagcaacagggatcatgctaacagtactgttctcatcaccttgcagctgagcattgttcttggcatgggtctcactgttgtgcttggggttggcatgaagtttggggctggaattttcacaaaggacatcgacgtgatcgatgtcattcacaaaggcattcctgtaagaatatctgtcaagatgttcagagggtagcaacatgtttaactattttccaagattcagacattgactgatagctttgttttggggttcagtttgtcgctggcacacagacgataaattcactagccttcgtgttcgatggcatcaacttcggagcatcagactacacatactcagcttactccatggtaaatccctttcttcacacatatgagctctgaatattccctggaacatttcatctctgaaaatcttcctaacaatgaatcaatgctctaatgaaaatctccaggttggtgtggctgctatctccataccctgcctagtatacctttctgctcataacggattcatcggtatatggatcgcattaacgatctacatgagcctgaggaccatagctagcacttggaggtatatcagtataggatatactacagccttatccgctcttcattgcagccatttcttcagtagctcttagctcttagcctttaggattcatcatatactaggttgctaattacttctgctctatctgcagaatgggggcagcaagggggccatgggtgttcctccggaagtgatgggttttcaacttctcatggcgattattattaatcctcagcgttttgctggtagatagccatgcatactagtactagctctcatgtaattaaaaataagtacagttcttagcgcatgtcgtggtgtcgagtttattgcttcgtgaatcgggatcgtatctgactcattgtgggggagaggatacaccgttctttggtgtttgttgtgtgccggcgatggcaattgtttctgtgatatatgatattgaagtattatacattaattagtagtacattggatc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0216700, RefSeq:Os03g0216700