Os03g0219700

From RiceWiki
Revision as of 12:26, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0219700| Description = DEAD/DEAH box helicase, N-terminal domain containing protein| Version = NM_001055938.1 GI:115451604 GeneID:4332087| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0219700

Description

DEAD/DEAH box helicase, N-terminal domain containing protein

Version

NM_001055938.1 GI:115451604 GeneID:4332087

Length

2409 bp

Definition

Oryza sativa Japonica Group Os03g0219700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:6313349..6315757

Sequence Coding Region

6313501..6315222

Expression

GEO Profiles:Os03g0219700

Genome Context

<gbrowseImage1> name=NC_008396:6313349..6315757 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:6313349..6315757 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaggctaactgttggccaagtgcatcgacatgtgcttgcattggcatcttcgcgatcatgcttcgtcctcggtgacaacctcccattgagaatgctttcattaccacgagcggttagatttcaccagaccgcttggcttggtactgaaacagtacaagataagagtgcttcactaactctagctagtcttgaagggcaaaacaaagttgaatatggtaagaaagaaaaagcaacacgcattggaggtccaaagccgtcttcaagggcttctgctcttaaggtgaaaccaaaagtttcttcatttaattccaaaccagcaaagagcaccttaccgaaatcagcagtagtgaagaagactctgaagatagatgaatctcttttctctgcaaaatcatttgaagagcttggtttgccgcctttgcttatagatcggttgaacaaggaaggtctaagtactccaactgaggtccagtctgctgctattcctatcatttcacaaaagcatgatgcagttatccagtcatatacgggctcagggaagacactcgcttaccttctccctattctttctgaaataggccccctaaagaggcctacagaacaagatggttctgataagagatcaggtgtagaggcagttattgttgctccttccagagaattaggaatgcagatagtgcgagaagtggagaagattttgggccctaatgataagaggcttgtccaacaacttgttggtggggctaatcgttcgaggcaggaagaagcattgaaaaagaacaagccacttattgttgtgggaacacctggtcgtatttctgaaatttcagcagggggcaagctacacacccatggttgccgctttcttgtactggatgaggttgaccagcttttgtctttcaattatcgtgaagatatgcatagaatacttgaacatgtaggaaggaaatctggtacttcatctagagatattcttggccctcttgcaaggcggtctgagcgccagactatcttggtttctgcaacaataccgttttcagttatacgagcagccaggagttggggtcacgatccagtccttgttagagctatgagtgttgttccacttgattcaattactgttccaagacctgtgctgtcccagacagatgccaaccccaactctccatcaaattcagtgaatcaagctgcagttaacagcttaccaccatctttggaacattactattgtatatccaaggctcaacacaaagttgacactttgaggagatgtatccatgctctggaagctcagacagttattgcatttatgaacaacaccaagccattgaaagatgttgtatttaagttggaggcccgtgggatgaaagctactgagctacatggagatcttggaaagcttgcaagatcaactgtgctgaaaaagttcaaggatggtgaattcagagttctagttacaaatgagttgtctgccagaggactggacgtgccagaatgtgatcttgtgattaatctggatcttccaacagactctacacactatgcccacagagctggccgaacgggccgtctagggcggaaaggaactgtggtcacaatatgcgaagaaactgaaacatttgttgtaagaaaaatgcgcaagcaattagctgtacccatcaagccatgcgaattcacggaaggcaagttgcttgttcataatgaggaagatgtagaataa</cdnaseq>

Protein Sequence

<aaseq>MRLTVGQVHRHVLALASSRSCFVLGDNLPLRMLSLPRAVRFHQT AWLGTETVQDKSASLTLASLEGQNKVEYGKKEKATRIGGPKPSSRASALKVKPKVSSF NSKPAKSTLPKSAVVKKTLKIDESLFSAKSFEELGLPPLLIDRLNKEGLSTPTEVQSA AIPIISQKHDAVIQSYTGSGKTLAYLLPILSEIGPLKRPTEQDGSDKRSGVEAVIVAP SRELGMQIVREVEKILGPNDKRLVQQLVGGANRSRQEEALKKNKPLIVVGTPGRISEI SAGGKLHTHGCRFLVLDEVDQLLSFNYREDMHRILEHVGRKSGTSSRDILGPLARRSE RQTILVSATIPFSVIRAARSWGHDPVLVRAMSVVPLDSITVPRPVLSQTDANPNSPSN SVNQAAVNSLPPSLEHYYCISKAQHKVDTLRRCIHALEAQTVIAFMNNTKPLKDVVFK LEARGMKATELHGDLGKLARSTVLKKFKDGEFRVLVTNELSARGLDVPECDLVINLDL PTDSTHYAHRAGRTGRLGRKGTVVTICEETETFVVRKMRKQLAVPIKPCEFTEGKLLV HNEEDVE</aaseq>

Gene Sequence

<dnaseqindica>536..2257#ggcttcaggctaactaagccctaaacccgcgtgtctcctccctcctcgcgagttcgccggccgcctcgcctgcgtcgatctccagtgggcagcggcgccggcgtctgctgcttccgccgcatcctcgcccgctggtgagcaccccacccgttacgcgcatcctctttctcatctctcactaacccacactttttttcccctccgatttgcgttggccctagcttctcttctagatctgtaggttgcctttctctttacctttttgccttaaccttagcacgaataacaatttagtttgttcccaagaaaatttgggggttcaaccgagtttaacacgattgatgccaccgatactccacagacttcttgcgtctaactttgttttactattgcaagttgtgaatgctgcagtttacatgattcaattgtttggttctttgcacagccaagagcacccccggtgaatttgcgagatcagttgggagtaaggacatttcggctgctgtaaaattggttttcataagcagagcagcagatgaggctaactgttggccaagtgcatcgacatgtgcttgcattggcatcttcgcgatcatgcttcgtcctcggtgacaacctcccattgagaatgctttcattaccacgagcggttagatttcaccagaccgcttggcttggtactgaaacagtacaagataagagtgcttcactaactctagctagtcttgaagggcaaaacaaagttgaatatggtaagaaagaaaaagcaacacgcattggaggtccaaagccgtcttcaagggcttctgctcttaaggtgaaaccaaaagtttcttcatttaattccaaaccagcaaagagcaccttaccgaaatcagcagtagtgaagaagactctgaagatagatgaatctcttttctctgcaaaatcatttgaagagcttggtttgccgcctttgcttatagatcggttgaacaaggaaggtctaagtactccaactgaggtccagtctgctgctattcctatcatttcacaaaagcatgatgcagttatccagtcatatacgggctcagggaagacactcgcttaccttctccctattctttctgaaataggccccctaaagaggcctacagaacaagatggttctgataagagatcaggtgtagaggcagttattgttgctccttccagagaattaggaatgcagatagtgcgagaagtggagaagattttgggccctaatgataagaggcttgtccaacaacttgttggtggggctaatcgttcgaggcaggaagaagcattgaaaaagaacaagccacttattgttgtgggaacacctggtcgtatttctgaaatttcagcagggggcaagctacacacccatggttgccgctttcttgtactggatgaggttgaccagcttttgtctttcaattatcgtgaagatatgcatagaatacttgaacatgtaggaaggaaatctggtacttcatctagagatattcttggccctcttgcaaggcggtctgagcgccagactatcttggtttctgcaacaataccgttttcagttatacgagcagccaggagttggggtcacgatccagtccttgttagagctatgagtgttgttccacttgattcaattactgttccaagacctgtgctgtcccagacagatgccaaccccaactctccatcaaattcagtgaatcaagctgcagttaacagcttaccaccatctttggaacattactattgtatatccaaggctcaacacaaagttgacactttgaggagatgtatccatgctctggaagctcagacagttattgcatttatgaacaacaccaagccattgaaagatgttgtatttaagttggaggcccgtgggatgaaagctactgagctacatggagatcttggaaagcttgcaagatcaactgtgctgaaaaagttcaaggatggtgaattcagagttctagttacaaatgagttgtctgccagaggactggacgtgccagaatgtgatcttgtgattaatctggatcttccaacagactctacacactatgcccacagagctggccgaacgggccgtctagggcggaaaggaactgtggtcacaatatgcgaagaaactgaaacatttgttgtaagaaaaatgcgcaagcaattagctgtacccatcaagccatgcgaattcacggaaggcaagttgcttgttcataatgaggaagatgtagaataagctctgcattgtcgaaatgacatttaatgtcttgaagtgttatttgtgtatgggcatttctcatagattgtattatcttaaaatgttatcaaccgatgtttttttgctcgatacaaatattcagataaatgggaatagttgtctttcctggg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0219700, RefSeq:Os03g0219700