Os03g0235900

From RiceWiki
Revision as of 12:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0235900| Description = Nitrate transporter| Version = NM_001056024.1 GI:115451776 GeneID:4332183| Length = 5423 bp| Definition = Oryza sat...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0235900

Description

Nitrate transporter

Version

NM_001056024.1 GI:115451776 GeneID:4332183

Length

5423 bp

Definition

Oryza sativa Japonica Group Os03g0235900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:7212763..7218185

Sequence Coding Region

7212815..7213637,7214563..7215119,7215492..7215709,7215924..7216020,7216647..7216706

Expression

GEO Profiles:Os03g0235900

Genome Context

<gbrowseImage1> name=NC_008396:7212763..7218185 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:7212763..7218185 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggactcctcataccagcatgacaagcctctgctggatgaagagaactcctcgcaagtgacccttgaatatacaggtgatggatctgtttgcatccgtgggcatcctgctttaaggaaacatacagggaactggaagggttcctcattagccatcgttttttcattctgctcttatctggcctttacttcaattgtaaaaaacctagtcagttatctcacaaaagttctacatgaaacaaacgtggccgctgcaagagatgttgcaacttggtcaggaacaagttatcttgcacctctggttggagccttcttagctgattcatatctggggaagtactgtacaattctgatcttctgcacgatcttcattatcggattgatgatgttgcttctgtcagcagcagttccattaatctctactggtcctcactcatggatcatatggacagatccagtctcttctcagaacatcatattctttgtcggtttgtacatggttgctttagggtatggtgcacagtgcccctgcatatcatcatttggtgctgatcaatttgatgacactgatgaaaatgagagaacaaaaaagagttcttttttcaattggacctatttcgtagccaatgcgggctcattgatctcggggactgttattgtgtgggtgcaagatcacaaaggttggatctggggttttaccatttctgcactatttgtgtatttaggttttggtacttttatctttggctcctctatgtatagatttcagaaacctggaggaagccctcttgcgagaatatgccaggttgttgttgctgctattcacaaacgcgataaagatttgccatgtgattcctcagttctttatgagtttctggggcagagttcagcaatcgaaggcagccgaaaattggagcatacaactggacttaagttctttgatagagctgcaatggtgacaccatctgattttgaatctgatggcctactaaacacatggaagatttgcacagtcactcaagtggaggaactgaagattttgatcaggatgttccccgtttgggcaacgatgatattatttgctgcagttctggacaacatgttttcgacattcatagaacaggggatggtgatggagaaacacatcggctctttcgaaatacctgcggcgtccttccaatccattgatgtcattgctgtccttatactagttccagtctatgaaagagtccttgttccagtgttcagaaaattcactggcagagcaaatggcattactccactgcagcgaatggggatcggcctgttcttttccatgctctccatggtatcagcagcattggtggagagtaatcggttgcggattgcgcaggatgaaggtttggtgcacaggaaggtggctgttccaatgagcatcctgtggcagggaccccagtacttcctgataggcgtgggagaggtgttctcaaacattgggttaactgaatttttctaccaggaatcaccggacgccatgagaagcttatgtctcgcattctcacttgctaacgtttcggcaggaagttacctcagctcgtttatcgtttctcttgtgccagtgttcacagccagagaaggcagtcctggatggatacctgataacttgaacgaagggcatttggatcggttcttctggatgatggctggcttgtgtttcttgaatatgctggcctttgtgttctgtgccatgaggtacaaatgtaagaaggcttcctga</cdnaseq>

Protein Sequence

<aaseq>MDSSYQHDKPLLDEENSSQVTLEYTGDGSVCIRGHPALRKHTGN WKGSSLAIVFSFCSYLAFTSIVKNLVSYLTKVLHETNVAAARDVATWSGTSYLAPLVG AFLADSYLGKYCTILIFCTIFIIGLMMLLLSAAVPLISTGPHSWIIWTDPVSSQNIIF FVGLYMVALGYGAQCPCISSFGADQFDDTDENERTKKSSFFNWTYFVANAGSLISGTV IVWVQDHKGWIWGFTISALFVYLGFGTFIFGSSMYRFQKPGGSPLARICQVVVAAIHK RDKDLPCDSSVLYEFLGQSSAIEGSRKLEHTTGLKFFDRAAMVTPSDFESDGLLNTWK ICTVTQVEELKILIRMFPVWATMILFAAVLDNMFSTFIEQGMVMEKHIGSFEIPAASF QSIDVIAVLILVPVYERVLVPVFRKFTGRANGITPLQRMGIGLFFSMLSMVSAALVES NRLRIAQDEGLVHRKVAVPMSILWQGPQYFLIGVGEVFSNIGLTEFFYQESPDAMRSL CLAFSLANVSAGSYLSSFIVSLVPVFTAREGSPGWIPDNLNEGHLDRFFWMMAGLCFL NMLAFVFCAMRYKCKKAS</aaseq>

Gene Sequence

<dnaseqindica>4549..5371#3067..3623#2477..2694#2166..2262#1480..1539#gtggaggagagtgaggacggcccacgcggagcagcagagagtggcgggctcagtgtcgggctcgccggagtccggccaatccggccggttcatgcttcattctctcggtgcgtgatttctccgattttcgtctccatctagtacctgaagcgaggcaaatttaattgcccccttttcggtgcaaactatctcgtcagattagtcgcatgcatgttccttcgttgaattttgcaaagttagttgtagagagaagttcttgggagggtggatgctacggtctcatcttctctcttttcccccaacaagcgagctagcgaaggggaaaatggggggagcagaagaatatccatgttaggttcgcgtgcttgcctctcggctgagctctagctgttacggcgttcgtcaggatggctaatccgtctcgccaattagaagatggataggtcgtagcgttagatggattacttgatggttgatgcgctgcccatttattgttcgtagcaggttctgtcttctcagtccgtgtgagtgtttcatcatattggctaccaagatgatcactcttcgtttatcaagagagtagggtgagatctcaatccgttgcaactgatgagtacttccttcgtctcagaatgtaagtatttttgagttagacacagatattaaaaaagtaggtagagatgattggaggagagttgtgattgatggggaagagaaagtaggtgaaaaaaatggttgtgattggttaagaggagagagtaggtgaataaatagcttcattttgggacaagttactgtactaaaaatagatacattttgagacggagatagtagtatacttcacttactaccgagtacggctttagttttgctacctccgtcctaaaatatagtaacctaggatcggatgtagcatgttactactaatctagataggcagcatgtctaaattaatagtaatatgatgtgactcgtttagtacaatattgatatattttaggatggaagaaatatataaatactgtttttttattcgaagtagttggcccatcatttctgaaatagatgattgatgccatgacgccgcttgctttctagaactactagtaattttaggtgagagctagtactgatgcgtcagtctaagataatggacaaaaaagggctacaggctactattgattatcacattaaaactctgtacgacagatttttctgattaaatgatagccatatgcccaacgtgctgcttgtctaaactgaaacctgacatcactcacagtatgcccagttgttgggtggtctattattatttataaattataactctggcatttttttattgtagggcaatatgttttccattattttccattaaaacctctaatctgcacttccactatctgctcaaaatctcaggctactttctttcctcttcctcaggacattaacctggtttacttgtaagaaagtaaagccatggactcctcataccagcatgacaagcctctgctggatgaagagaactcctcgcaagtggtttgttctctctctctctcactctcatagcgagatttgtctgatttttttctcttaaagagaaaaaaatatttggccaaatttgaggtgccttttctgctttcatcaaatggtgtgaaaatactgctttcagctgatgttttgtttctgtttaatgctctagttctagagtgttgcgaaagtaaaaaagaaatatagagtgaagttcagtcggaaaattttctcttacttaaaattattttatatggttgcactagtatggggcatggccgactggggcatgcaatccaagataaactttcaaatgttctgtctaaatatatcatccttacaataaggacataaagtggtagcaatatattactaatgtgaccataagaatggctaggcccttgcatactaataatgtttttagttagtgatactttgcagtttttttggatgatcagttaatttgcttccaatgtatataatataattttgttcttaggataaattttcctggaaatatatagaataattccatctacattaggaaaatgcacaattctctattgaaacatctataccagtgatggatgacactggcattaaaggctatttgtgttttttacttggaaatgcagacccttgaatatacaggtgatggatctgtttgcatccgtgggcatcctgctttaaggaaacatacagggaactggaagggttcctcattagccatcggttagtgctgaaaaatgatgttgcattgtcaagcttctgcttgaagatatagtaggatatttgatgctaaatactcgaacatctgaaactgatttcatttcccagcatttatatatattacagtattattatgatttatgaatattctttcctcctgtgtttgggttctgtttaattttatactggaccttttatggttcattttttattgcagttttttcattctgctcttatctggcctttacttcaattgtaaaaaacctagtcagttatctcacaaaagttctacatgaaacaaacgtggccgctgcaagagatgttgcaacttggtcaggaacaagttatcttgcacctctggttggagccttcttagctgattcatatctggggaagtactgtacaattctgatcttctgcacgatcttcattatcgtaagtgacagtatgaactaatgcacgtttgtatatcatctaaaataacgattataatcctttttttttggaagtaaacactgtaagagatgatcccaattcctacgtccactcagtgagcaaaaatttgtatcctcagtgaacaatagtatgaaattcagatggacgaatggcagtattaaactctagtttatacagttaatcttcagatgtaagaggagtgatgcattcaacacttgacaaacttttatagacatgattgtttacattttcctttatatcatttttctagacatgaccgtttacattttcctttataccatttttctagaaatggtcgttcacatttttttcctttatccttttatttagggattgatgatgttgcttctgtcagcagcagttccattaatctctactggtcctcactcatggatcatatggacagatccagtctcttctcagaacatcatattctttgtcggtttgtacatggttgctttagggtatggtgcacagtgcccctgcatatcatcatttggtgctgatcaatttgatgacactgatgaaaatgagagaacaaaaaagagttcttttttcaattggacctatttcgtagccaatgcgggctcattgatctcggggactgttattgtgtgggtgcaagatcacaaaggttggatctggggttttaccatttctgcactatttgtgtatttaggttttggtacttttatctttggctcctctatgtatagatttcagaaacctggaggaagccctcttgcgagaatatgccaggttgttgttgctgctattcacaaacgcgataaagatttgccatgtgattcctcagttctttatgagtttctggggcagagttcagcaatcgaaggcagccgaaaattggagcatacaactggacttaagtaatacactatgttgacattacaactttgatgcctatattctatgcttttatttatgcttgcatttctgttgaactataatttatttcatttctagtaatatgattttgtaagcttgtctttaactcattctagtgtagtgcccatgcgatgcactggtttttatatactacctctattttaagtatatgatgctattgacttttggacatgatgtctgaccattcgtcttattagaaaatttagtgcaaacattcaaaaatataggtcatgcttaaactatcttcaatgataaaacaactcacaacaaaaaaaaatggtactcacatagttttttcaaataagatgaatggtcaaacattagatccaaaaattaacagcgtcgtatattacaaaacactggtagtacatgaatatcatatagcttaattttaaaatttcaaaatgatggcttgaaatataaaactaaattaaattatatcaaccagccatatacttgtgtacaatatgcaaatatttttttaaaaaaatcctacagtaacactttgaataataattttaatattttgggaaactcctctttttagggagtagagatacttaattccagtaaagcatttcattctttcactctttgaaaattcttctgtgggacacatcacacaatacaaatatggaaaaccagttaacattacaagagtttcagcacattgtttataatattctctaaagaaatgtctcttgtgatatcgcttttgaaacaaagtctcccgtaatacacttatttctgctgttcatttatacatactagaagcaaaccttcattgttcatgaacctttgtttgtcaatgcaaagtcggcaaggagctgtccattccatctcagctctatcaagttagccatctatttattttatttctctcaggttctttgatagagctgcaatggtgacaccatctgattttgaatctgatggcctactaaacacatggaagatttgcacagtcactcaagtggaggaactgaagattttgatcaggatgttccccgtttgggcaacgatgatattatttgctgcagttctggacaacatgttttcgacattcatagaacaggggatggtgatggagaaacacatcggctctttcgaaatacctgcggcgtccttccaatccattgatgtcattgctgtccttatactagttccagtctatgaaagagtccttgttccagtgttcagaaaattcactggcagagcaaatggcattactccactgcagcgaatggggatcggcctgttcttttccatgctctccatggtatcagcagcattggtggagagtaatcggttgcggattgcgcaggatgaaggtttggtgcacaggaaggtggctgttccaatgagcatcctgtggcagggaccccagtacttcctgataggcgtgggagaggtgttctcaaacattgggttaactgaatttttctaccaggaatcaccggacgccatgagaagcttatgtctcgcattctcacttgctaacgtttcggcaggaagttacctcagctcgtttatcgtttctcttgtgccagtgttcacagccagagaaggcagtcctggatggatacctgataacttgaacgaagggcatttggatcggttcttctggatgatggctggcttgtgtttcttgaatatgctggcctttgtgttctgtgccatgaggtacaaatgtaagaaggcttcctgaaccttgttaacattagcaatataatggtggtggaaaaggacaattgtgttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0235900, RefSeq:Os03g0235900