Os03g0241100

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Revision as of 12:28, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0241100| Description = Myb, DNA-binding domain containing protein| Version = NM_001056048.1 GI:115451824 GeneID:4332208| Length = 5826 bp| ...")
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Gene Name

Os03g0241100

Description

Myb, DNA-binding domain containing protein

Version

NM_001056048.1 GI:115451824 GeneID:4332208

Length

5826 bp

Definition

Oryza sativa Japonica Group Os03g0241100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:7518942..7524767

Sequence Coding Region

7519421..7519516,7519618..7519665,7520778..7520887,7521544..7521628,7521732..7522008
,7522189..7522347,7522456..7522559,7522823..7523061,7523158..7523476
,7523558..7523962,7524050..7524187,7524269..7524448

Expression

GEO Profiles:Os03g0241100

Genome Context

<gbrowseImage1> name=NC_008396:7518942..7524767 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:7518942..7524767 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtccctcgttagatccgcccctgcccggcaatgggcagcatggacacgccaagaggaacaaaattttttcaatgcgctgcgccaagtagggaagaattttgagaagattacgctgcgtgtccagagcaaaagcaaagatcaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttctcggtcctgagttctcgctcgatgcaaaaaattccaaggacaccattgctgctatgctctgctggtggtctctgcttgaaaaatttagctgcagtgcatcaaaactgcatctgaagcctcggagattcaaaactttcgtagaagcattgggaaatcaactactaaaggatagaaataaaaccagaaaaaagtgtccacgtggggatgtgtgcctgtcctcttcatcttcggctgtcaacaggactcctggaaatgaatctttctcagtaaaactcttggctgtggatgtctccaatggtagcaaagtaggatcttctaaagggtcatttttcaaaaaggtcacagaaccaaattgcagtaacaagtcaggtgcaactaaaggggacctctccgccacaagaactgtgaaacagaaaagaagagcaggtggtgttgttgcatctgctgcatataaaaaatgggagagagctgccatggctggtgtttctttggttgctgatgcagctgaagagcttgagcgcaacacagtgaacgctgatgcaagaatgttatctccatcatcaagcaatgcctgcacagttgatggtcttggcacaaatcatataaaggaagcagatcaacaagcacctgcaaagctaaagttgcagctatttccaataaatgaagctacacgaaaggcattagagaaggatgaacataatccacatctggaactcacattaagtgctaggaaaaaaatatcatcagtactagaacatttgaaccgcaagtggggcaactcaaacattgcatctggagagcttttgctttttccatattgtgctcatcaagaagatttagctacatatcagaggtggaccacaaaagatactgtcgcagtggctgacgttttcctttctgtgaatagcccatctgtttttcgattaaggtatggttggttttcccttgctgagcttgaagcaggcgtaagtgaaatatctttgactcattttgagaattgcttgatacctgaagacatccatgccaaatctcccttagaggcttgtgtgcaaaaggatggtaattcgctcagtagttgtgctcctgagcaacacccttgtggttcgaaagatcagtcagcattattgtttgctatgccatctagtacaggcaagagtgctcaggtgccagagcagtgcattgatgttctcccctcacagtttggcaggcagaatcaagaccaagttaccacgaaccaagtttttgaggttgatcaagggatggattgtgctgcagtatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactgacagaagcttccagaggtgctaatactgattgtccagggacatctgttgtcaaaaacacactgttgcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcatgcttctcgttataaatcagcagagcagccagcccttgcatcccattcaaccatctggggtgctgaagaaacctgtgacgcattcagttttaacctaccagcatctaggaagcgagaaggttcaaataattcagctagcagctctcccgatagtgacagtgatgttcatccttcaaactcagaagggtttcaatgttttcttcaggacttagctggagcggcggttgctcataatccttgtattgacgatgccaaagatgtagagtcactttgtgctgaatcgccacctcgaagtgaccacgattctgctccgaaggatcaatctctagctgacttatactggcctgattcacttggaccattggacttggacataccgtccgcgacataccatgctgatgacttactcctaggggacagccagaatagttggaaccgcatgatggcgaatagcctggatgcatttcgaaacctgtcgttcttcacggcagataagaatgactcgataccatccatcatgtag</cdnaseq>

Protein Sequence

<aaseq>MSLVRSAPARQWAAWTRQEEQNFFNALRQVGKNFEKITLRVQSK SKDQVRHYYYRLVRRMKKLLGPEFSLDAKNSKDTIAAMLCWWSLLEKFSCSASKLHLK PRRFKTFVEALGNQLLKDRNKTRKKCPRGDVCLSSSSSAVNRTPGNESFSVKLLAVDV SNGSKVGSSKGSFFKKVTEPNCSNKSGATKGDLSATRTVKQKRRAGGVVASAAYKKWE RAAMAGVSLVADAAEELERNTVNADARMLSPSSSNACTVDGLGTNHIKEADQQAPAKL KLQLFPINEATRKALEKDEHNPHLELTLSARKKISSVLEHLNRKWGNSNIASGELLLF PYCAHQEDLATYQRWTTKDTVAVADVFLSVNSPSVFRLRYGWFSLAELEAGVSEISLT HFENCLIPEDIHAKSPLEACVQKDGNSLSSCAPEQHPCGSKDQSALLFAMPSSTGKSA QVPEQCIDVLPSQFGRQNQDQVTTNQVFEVDQGMDCAAVSEGEWADTLTDISVGYLLT EASRGANTDCPGTSVVKNTLLLENPCSYDSFDAAVALHASRYKSAEQPALASHSTIWG AEETCDAFSFNLPASRKREGSNNSASSSPDSDSDVHPSNSEGFQCFLQDLAGAAVAHN PCIDDAKDVESLCAESPPRSDHDSAPKDQSLADLYWPDSLGPLDLDIPSATYHADDLL LGDSQNSWNRMMANSLDAFRNLSFFTADKNDSIPSIM</aaseq>

Gene Sequence

<dnaseqindica>480..575#677..724#1837..1946#2603..2687#2791..3067#3248..3406#3515..3618#3882..4120#4217..4535#4617..5021#5109..5246#5328..5507#aactttggcactaatgttccttacgtgctagtgtgtgtgtatatatatatatatatatatttgaaaggagtaagttttttcagtctatttatgaatgaatttttgaaaaggaccgaaatgtaaaaatccagccaaaatcattgtgcggccctggtgctcggcgtcgactcccgtctcgtctcctcgcgagctcgcccacccgccgccctgcgccgatctccatcgattccgcgacttcgcgagcagtggcgccgtcgtccgtcctgctgcttccgccgcatcctggtgagcaccccgatcagtatgcctcatgctctttctcatctctctgtaccctacgaacccttttctcgaatttgcgtgcgttaaccctagcttctgttctagatctgaaatttccccttaatttgccttaaccttagtactattaacagtttgtttgttcgcgaaaaaggtttgggggttcaactgaaccccctatgtccctcgttagatccgcccctgcccggcaatgggcagcatggacacgccaagaggaacaaaattttttcaatgcgctgcgccaagtagggaaggtaagacacatacgttcttgatgcaatgttgtgctgttcttgcgaattactgcgtttgtgcactaatcgattgatgcgtgatgtcttgtcctttgtgtcagaattttgagaagattacgctgcgtgtccagagcaaaagcaaagatcaggtacaccatcttcagacaagaactattttatgatgtttaatttctgttattaacaaattaggaatttaaagcagaggtcgatatgtttagatcgtaaatttagtacgcctttatgatacttgtcattatttatttaactgattacccggggtcttctggctagcatcacaaggtggtggtctagccggtcagggttcgagcctcattcctcttaataaattccgatataagagcccctcctctcatatccaacgttatttaactgattaggaaagtcgaaggagaggaagattcgcattaggcagtaaattttaattctatgaactgttgtaaaggactttcccttcgacgggatgtcaattagagttgagtaaatgaattttacgttgagaaaaaagattacaagtaaccggcgtagggaaactacatttccaaatatggcctttgttgttgcttgacatagtgccagtatcccttcagcatatacgtaccatttccgttgatttcgtgggagaagggtgagtggattgcaatctccatccttgcattcccatcaggattaggtactttcacttgcagcagatctctcttcctgacttgctgttacatacaactgattcgacttattttccatccttaagtttgtataggtgatgctgttatgggcaactccaactttcgagcatggtgcaaagaaccggcactatgttttgtttaggtttagttgtatcttagtactatccccttggatagatagaatgaagtgaggtactttcctcaccatcttagcacaagccttatagcacaagtcgcacacctcacctaatatgctgcacctggaatagcttgaggaattttcccacagtgcgtgttgcctgatcgtctaagtgttccctgtgaactacgatgtgtatgctttaaagcggtaaacaccaaaaggtcaaaacagttctctctacgacaattgattgtcttttacaccatcatatgggtagcataatttgtaacagatgcttcattgtatataaacaatatttgcataaactagagaacacctgaatgtctgccattggcatgaagattcactgtattttcaacttttcacattacaggtcagacattattactatcgtcttgttcgacgcatgaagaaacttctcggtcctgagttctcgctcgatgcaaaaaattccaaggacaccattgctgctatgctctgctggtaattaaatgaatccctacgtgcaaatcaatctgattaggtgtgctttaagcttcttgttctattaatttatatatatagcatgattgcaaaaggtagtatttgatctcacaatatcgctgaggtatctttgcgatatatattcttttcctagtaggctaagaacgcacataccttatctttttagtttatagaggacgaggctataattttattttaccttattacagttatgggtcactgctgtaatacctagagtgctagaactattgggccttcgtgctgatattgtgtatacaccttatcatgtttggtgcctatattttaaaactgtcagaactgttcaatcaaaatggtttctgagctttggaaaaaaaatcatatttctgagttcagaatatgattctgaacaaagaaaaagtcttttgatgacaaaaattgcacaactgagaatgtacttttacgattaggagtgcttggatcagcagggagggcttttaatattttttattctgatgcagaatgccctcttgtctatgtgcaagatgggagagaataccgtttgttgcttattgtcattgcttttgatttgatcctatgatgcttccttttacactgcatggaaaactctcagatactaacttggttttatgcaggtggtctctgcttgaaaaatttagctgcagtgcatcaaaactgcatctgaagcctcggagattcaaaactttcgtagaagcattggtttgttacagcacttgttattctcccagcttttcataattgtaggaactgttctttttttttatttagttttttttctcatgtgatatatccaactttatagggaaatcaactactaaaggatagaaataaaaccagaaaaaagtgtccacgtggggatgtgtgcctgtcctcttcatcttcggctgtcaacaggactcctggaaatgaatctttctcagtaaaactcttggctgtggatgtctccaatggtagcaaagtaggatcttctaaagggtcatttttcaaaaaggtcacagaaccaaattgcagtaacaagtcaggtgcaactaaaggggacctctccgccacaagaactgtgaaacagaaaagaagagcaggttacaatgccatttttcttttggtttgatatggtttagcttactcatattttgtcttatgcaatatgcagtttgtatgttttagcagctaagccttgacaataaaatatattatatgaagaccatatagtgttgagctttcctcacattagttttgagagcagctgacctgtgttttaggtggtgttgttgcatctgctgcatataaaaaatgggagagagctgccatggctggtgtttctttggttgctgatgcagctgaagagcttgagcgcaacacagtgaacgctgatgcaagaatgttatctccatcatcaagcaatgcctgcacagttgatggtactatttcataccattgctttgtacttcctatatttactacactatgtttctatgctttcttgactataaatggctgggtcttgatgttttattctacattggcaggtcttggcacaaatcatataaaggaagcagatcaacaagcacctgcaaagctaaagttgcagctatttccaataaatgaagctacacgaaaggcattagagaaggtaaatatgtctctttgttgctagcaaactgcaatatgaaattatgaatcacagtgctataggttaactattggctcaaacactcagatccctgtggttgataaaatttcttctgataaatggaatcaaacggaacgtggagcacaaataacctgattagggcttttgcgttatgaattttctatcgtgtctgatatattctgttcagttttcatatgttagcagtttggacatgatatgacagtcctgtctctttttgacaggatgaacataatccacatctggaactcacattaagtgctaggaaaaaaatatcatcagtactagaacatttgaaccgcaagtggggcaactcaaacattgcatctggagagcttttgctttttccatattgtgctcatcaagaagatttagctacatatcagaggtggaccacaaaagatactgtcgcagtggctgacgttttcctttctgtgaatagcccatctgtttttcgattaaggtacggattttcagtgtagtaaacgaactataatattgtaatacatggggcaataataacaaatactaactgttgttccaactttttgtcaataaggtatggttggttttcccttgctgagcttgaagcaggcgtaagtgaaatatctttgactcattttgagaattgcttgatacctgaagacatccatgccaaatctcccttagaggcttgtgtgcaaaaggatggtaattcgctcagtagttgtgctcctgagcaacacccttgtggttcgaaagatcagtcagcattattgtttgctatgccatctagtacaggcaagagtgctcaggtgccagagcagtgcattgatgttctcccctcacagtttggcaggcagaatcaagaccaagttaccacgaaccaagtttttgaggtactacagttttgtgcatacttttgtcaagtgaacattccagtgataatcgtgtatcttctaattgtttctgtacttcaggttgatcaagggatggattgtgctgcagtatctgaaggagagtgggcagatacccttactgatatcagtgttggatacttactgacagaagcttccagaggtgctaatactgattgtccagggacatctgttgtcaaaaacacactgttgcttgagaatccctgcagctatgattcatttgatgctgctgttgctcttcatgcttctcgttataaatcagcagagcagccagcccttgcatcccattcaaccatctggggtgctgaagaaacctgtgacgcattcagttttaacctaccagcatctaggaagcgagaaggttcaaataattcagctagcagctctcccgatagtgacagtgatgttcatccttcaaactcagaagggtttcaatgttttcttcaggtttgttccatttattgatccaacctagaataataaacatttttttatacatagtattgttaatttatgacttatttggtgttgcaggacttagctggagcggcggttgctcataatccttgtattgacgatgccaaagatgtagagtcactttgtgctgaatcgccacctcgaagtgaccacgattctgctccgaaggatcaatctctagctgacttatactgggtactatacaaatgtcctatccatacctgttttcttttcatggtgtaatgctcataactaaacaatcttctctcctgacagcctgattcacttggaccattggacttggacataccgtccgcgacataccatgctgatgacttactcctaggggacagccagaatagttggaaccgcatgatggcgaatagcctggatgcatttcgaaacctgtcgttcttcacggcagataagaatgactcgataccatccatcatgtagagctctgaatactggtgcttccttcatgcgcttgcgtggtgaaattgctacgttggctacgaaggtttaccgccaacgatgctgtgcatctcgctgaagaggctttatattgtccaagtgagctgtttgtggctagatccaacagctgcggacttgctgtgcgtttgcagtcaagagggacgcatgttgttgtaaagtagtaacataagagctgttcgtgctaacatgtatgtcgtgtaaattgtggtgttcctgtaaaaaaaaaaagctcacacaatcgcttggttacaataaagcttctcctgccgtgtaccagatc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0241100, RefSeq:Os03g0241100