Os03g0242100

From RiceWiki
Revision as of 12:29, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0242100| Description = Checkpoint protein Rad24 family protein| Version = NM_001056056.2 GI:297600630 GeneID:4332216| Length = 6848 bp| De...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0242100

Description

Checkpoint protein Rad24 family protein

Version

NM_001056056.2 GI:297600630 GeneID:4332216

Length

6848 bp

Definition

Oryza sativa Japonica Group Os03g0242100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:7555338..7562185

Sequence Coding Region

7555338..7555568,7557286..7557333,7557979..7558035,7558481..7558580,7558768..7559078
,7559191..7559560,7560638..7560769,7561255..7561468,7561543..7561603
,7561991..7562185

Expression

GEO Profiles:Os03g0242100

Genome Context

<gbrowseImage1> name=NC_008396:7555338..7562185 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:7555338..7562185 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggaagcggccgccggtcgtcgtcctctcctcttcttccgacgaggatgaaggcgggggccgccgcgctgccacccgcggcccgtcggcgcggagggcaaggactcctgcgacggcgcccgcgccggcgcatgcagcgagcggcccgaggaagaagccgcggcgcgtgagtagcgcggagaggggccgccgtcgcgctacgggcgccgcaccgtccggctccctgaaggtcgaagatgtaaagaaatggttggacgaaaagctgagggcaccaaagggaacatttggaggatggactcttgtccttactggccaagctggcgtcggaaaatctgcaactatcaaagcaattgctgctgagcttggagttgagatatgtgagtggacagccccagtaccgacactatggacagaacatttgcatgctaactcaggacttgggtatatatccaagctggaagaatttgaaaactttgtcgagaagatacggaaatattcgttgctttctccaaccaactttggatcgcaaagaaagcatactatcatcctgattgatgacatccctgtaacaagtggaaaagtttcttttgcaagattaggaaaatgtttaacaggtctaattcaaagtactcaagtaccgactgtaatttcacttacccaatatcataaaagtgagaataacgatactgcaatgtggaactctgaggaccttgagtccttacttcaaagtgctggtgctcataagatttctttcaatccagtaaccgtaaattctatcaagaaaattcttgttagaatatgcaaacaagaaggctctgacttaactgacgatttggtgcatcaaatagctacatccagcggaggtgatatcagacatgcaataatgtctctgcagtactactgcctaaatccaagaaggctaaattctgcattggcaagaactgccattctgcctggtttaaagagcggtggctctctagttccagggcaagacagttatggttgcagctctgtaatacctactgcatgtggaagagatgagacacttacattattccatgcactggggaaatttttgcacaataaaagagaaacatatagtgaagtcgatgtcgctgtagatgtggattcgtttcctatgaaagaaaaactaagaagaaatccactcaaaatggatattccagaaaaggttctgtctcaagcgcatggaaaagtgcggacagttgctgactttctgcatgaaaatgttcttgatttcattgacaatgatgctattgatgatgcatggagtgtggcgtcatatttgagtgaggcagattgccttcttgctggtagtccaatttcgtcaacccgttggatggtaaatgaatcgtatgaagcggaaaacatgacacaacttattgctgcttccgttgcagcacgaggaattcttttcggaaatgcacatgtgtcatcatcaaggtggcatacaatccgtagcccaagagtttggcagattgaacagtcatttcgatccagaaaggatctgattcttagagaaagatacgattgttcaagtacatctggttctcgcaatttctctgatgtagtcacagaattcaaaccatttgagagatggattagtcctcataatgatatgcctagaagtaactccttcaaccacaatatagaagcaagcagttctgaagaagatgaagatgagatagaagattggtga</cdnaseq>

Protein Sequence

<aaseq>MGKRPPVVVLSSSSDEDEGGGRRAATRGPSARRARTPATAPAPA HAASGPRKKPRRVSSAERGRRRATGAAPSGSLKVEDVKKWLDEKLRAPKGTFGGWTLV LTGQAGVGKSATIKAIAAELGVEICEWTAPVPTLWTEHLHANSGLGYISKLEEFENFV EKIRKYSLLSPTNFGSQRKHTIILIDDIPVTSGKVSFARLGKCLTGLIQSTQVPTVIS LTQYHKSENNDTAMWNSEDLESLLQSAGAHKISFNPVTVNSIKKILVRICKQEGSDLT DDLVHQIATSSGGDIRHAIMSLQYYCLNPRRLNSALARTAILPGLKSGGSLVPGQDSY GCSSVIPTACGRDETLTLFHALGKFLHNKRETYSEVDVAVDVDSFPMKEKLRRNPLKM DIPEKVLSQAHGKVRTVADFLHENVLDFIDNDAIDDAWSVASYLSEADCLLAGSPISS TRWMVNESYEAENMTQLIAASVAARGILFGNAHVSSSRWHTIRSPRVWQIEQSFRSRK DLILRERYDCSSTSGSRNFSDVVTEFKPFERWISPHNDMPRSNSFNHNIEASSSEEDE DEIEDW</aaseq>

Gene Sequence

<dnaseqindica>1..231#1949..1996#2642..2698#3144..3243#3431..3741#3854..4223#5301..5432#5918..6131#6206..6266#6654..6848#atggggaagcggccgccggtcgtcgtcctctcctcttcttccgacgaggatgaaggcgggggccgccgcgctgccacccgcggcccgtcggcgcggagggcaaggactcctgcgacggcgcccgcgccggcgcatgcagcgagcggcccgaggaagaagccgcggcgcgtgagtagcgcggagaggggccgccgtcgcgctacgggcgccgcaccgtccggctccctgaaggtaccgatgtcgagctagagttcagttggacggtttgctgtatgaatgctgtatgttgcgcttagttaataatactgggactatctcgctcttaattggtgggatatacattttgtctgtggaattgtatactagcactagatatttgttttttgttttttttgggatgtcataattcgttttggagtctcataatccctggtttctgatatatacttgtttaggctatgtccagacgatatgagttgtgaaatatgtataacagtttagttggcacttggttggaaagctatcaacttaacacctaaagttctacttgcataggagataatttccctggttatatgtccatttcagtcgaaatgaaaagttggttatgtattatttttacaagctaatgctctctttgagattcaagaataaggactgaataatatttttattttctgctcggtgataggatggaccattcctttttccctgattgagttttgaactatgaactcgtaatgcaggaaagacctattaatgctactatctactagagatttggacttggctactcttttacgactactaatcttaactgagatgattccatcttcgctactagtagcattgcaaactgctgaattgttccaaataaagtaatttgctgtcagtactcagcaactcaatgcttactgatgttttatctccttaccttttaaaggctgaatttgacatgctttctgaagatttttccgaatgtctaaatgacttgggcatgccaggtacatctcttcatcgatttcttgatttaaaacttttttttaaaaaaggtcctgaccaatgtaattatcagattcactaagtacgagtgttttactaagtgggcagattttttatatctgtcgctacagtttacttgctagttagtcagggattagcagtttgacaataagttaatagaagattaactgcaaatgacataagtagtgttattttactatttctttcctgactcagcatatgagaagttatcgtgtccctgggtttatctatttccctttttgtctgatccatcaactgtttgaagcttagtagtttaactatggaagttactatttagattttgctatccaaactaaaaccgaagtgctagcagttaatcactgtttgcaataacctacaaaatcaaccatatatgaatatttttcccatgtaaacatcttaatttgttactatatttttgcagaatttttaattttactattcctaaattactctaatttgttcttcttgagtgttccagcattacatgtattcttttcctgtctgttataaaaataatttatcaaagtcttacactagtaagatgcctttgcttggtattctgactactatggccattgcaagtctttttatatgttgattagtctatttctaggcaggatctatatgtcaaacagaagagctttgggttgacaagtacaaaccacactcgttggctgagctttctgttcacaaaaaaaaggttagtgcatttaatcttttatgattaagtaaatttattccgcaaatgagcctcctcagtccagtgcattgcagaaacaaagattttgttccatccacattgtatggttttgatatgtgacttgaatttcttcagattgattttcatcataagtaaaatgcgaaaactttctgagaacgttagttgtctgccttctcgtaggtcgaagatgtaaagaaatggttggacgaaaagctgagggcaccaaaggtggttattccttgagtttatgacattgaatatccaagatttgtgagtaatgggtctgggttatcttcaggatcattaatattaggttactaagcagatttccagtttttgtttttatccttttgctttcaattatttgataatgtgagagtgctgaatttggcttctggttgtggtctcaatcaaggatgtttccagaatagaagggattgttacaatatgtatgacaggcaagattagaaggttgcacctttgtttgcaactttgcatacatattgtaatgattctgcagtctgttaccgccttataatagagtatctcaggaagctaaattatagaccacatgatgaatagcatttagatttggcaccaagatgtaggaaaagtcagcagactctttttcaatatttgaatgttttgaactgtaaaaattattatgaagcttttgagcttacctcagttctgcaaaaatttacctgcatgaggcaatgtattgaactaatgtgaattttgagtcgcatggtattaactagttaattatacagattcaaatttaccatatatgtgatgaacttttaggcatgaactagtttcacttgcttgcacaacaaagaaatactgacagtgcaaacacaattcttacagggaacatttggaggatggactcttgtccttactggccaagctggcgtcggaaaatctgtatgtcctttcatgctactattctcttgaattttagtttttcttttgcggagtttgtacaatatgcagactgttaacaagtgctaataaatcagttgaactttaattcattgctgcttgttagattcctaaagacctaagaccaccatatcccaccatatctgatatgacataaacaagtccagtgcgacatgacctgttgaaaatgcactgtattggtaacaatggatcaagacattgagtgaatgagtatcacctcaacttcaagtaattgcctactaaatcaaatgcatcctccagttacccgcctatcttatttctactgttctcttttggtttcacatagtgactattttgttgcccctgatgatttcagaaccttaggaactatgttgacctattgatgggagttgtctaatgataatgattgttacatctattacaggcaactatcaaagcaattgctgctgagcttggagttgagatatgtgagtggacagccccagtaccgacactatggacagaacatttgcatgctaactcaggtatcatatgttttgaggcttaaatattctctcttttgctccaaaaattgtttccagctgacttctgataaaagtatggatgaagtccatgcgtttctatacaatttagtactcagtatgctagtatagcacttgcaacttgcaatcacgtcccagttattttttttctttcaatgatcatttgaaggacttgggtatatatccaagctggaagaatttgaaaactttgtcgagaagatacggaaatattcgttgctttctccaaccaactttggatcgcaaagaaagcatactatcatcctgattgatgacatccctgtaacaagtggaaaagtttcttttgcaagattaggaaaatgtttaacaggtctaattcaaagtactcaagtaccgactgtaatttcacttacccaatatcataaaagtgagaataacgatactgcaatgtggaactctgaggaccttgagtccttacttcaaagtgctggtgctcataaggtaagattccctagtaaaagagcagttgctgtttgacagctttgatcatcatggcgaacaaacaggtttatgtgacttaagggtgtacggtgtaccaccaatttccttgcagatttctttcaatccagtaaccgtaaattctatcaagaaaattcttgttagaatatgcaaacaagaaggctctgacttaactgacgatttggtgcatcaaatagctacatccagcggaggtgatatcagacatgcaataatgtctctgcagtactactgcctaaatccaagaaggctaaattctgcattggcaagaactgccattctgcctggtttaaagagcggtggctctctagttccagggcaagacagttatggttgcagctctgtaatacctactgcatgtggaagagatgagacacttacattattccatgcactggggaaatttttgcacaataaaagagaaacatatagtgaagtcgatgtcggtatgtgataacctacctctgcacaaccttcttcttgatattggtatttactctctccattcaaaaatataagaacttcactatatggcgatgtcggcttttgaatcttgttccaaaatataaggatttctagcactattcatagtaccatttgtcccatcaatcacttcccattcaaatttcttcccatcttacccccacctactcttccacccccacttagccttatttgttgaggggcactaaaaagtcttatcttctcaaccttagtttctgctaaacaatctagaaacccttatattttggaactgaggtagtatttttcataacgtattgataacatgttacaattataattaacgtgtagactatttacatttttttcgaagattgttttgtacaacatttttttcaagagtttagtgctaattcactttgtgcgctagtttttatttggtgcacgagtagtttataaagcagttactatgcatccttttgtgtttatcaggtctactaaatactactccatccgtttcaggttataagatgttttgactttagtcaaagttaaactgcttcaaatttgactaagtctataaacttagtcaaacttgaagcagtttgactttgaccaaaatcaaaacatcttataacctgaaacggagggggtagtaattacttttgatttctcttagccttggaattcatttttggttagtatggctatatcttacacagcacaagttcctctgtgtatttcaggatcagcacgtaacatgtttaaaatcacttgttagtacttgatttgtagtcagttcatttgccccacttaacatcatctaatacttcgtagttacatgctcataagttccatagttcactgtggactgtggttacacaccactacagtatactctgccccttttgtttagataactattcttattggattacttcatcaaaaaggtactattggattatagaatgcaatgctgtgattctgaatgcctgcaagggtggtttattaaatttatgaatgacctagctttgttgtgtctgaaacttgtgatacttcagctgtagatgtggattcgtttcctatgaaagaaaaactaagaagaaatccactcaaaatggatattccagaaaaggttctgtctcaagcgcatggaaaagtgcggacagttgctgactttctgcatgaaaatggtaaacattgaaaagttttaccatgagtatcatacactatgcatattatactgtatgcttgtagctgtgttatatgattccatgctcgttgttgaaacactgaaaccatgattcttgaacttcgaagtattcatgcttatgtggctggctgctgctgtaattgctgctttagctaaggaaagtagcaaactactttacttttttttttacatctatcttccatcaccgttgctgtcacatactcgcgtattcacaataagccatcaaattagagtgcttaatttcttttgactgagtttatgatgtgaaaatgaggatggtatggattaaaaattgttcttctgtaaccgtgctttagcttcattacattttcatcaacattctttttgtaggtgtttgttcttgatagagctaattacctaccttaacctctgtcaaggtttaacttatagttgagtaaacatgtgaaacttggcatcttgcagttcttgatttcattgacaatgatgctattgatgatgcatggagtgtggcgtcatatttgagtgaggcagattgccttcttgctggtagtccaatttcgtcaacccgttggatggtaaatgaatcgtatgaagcggaaaacatgacacaacttattgctgcttccgttgcagcacgaggaattcttttcggaaatgcacatgtgtcatcatcaaggtaccttccttgtgaatatgggttcatctgacggatctcaaattgatagtttttgctgtgatttggctaagcaggtggcatacaatccgtagcccaagagtttggcagattgaacagtcatttcgatccagaaaggtaaattcgacaccataccatttccatgcaattatttagaccacaagtttggaaaaatcaatatatgtgttgaaaaatcaatatatgtgttatcatatattttctactagtactagagagtcaactttcacatcgttctagagtactttctctctgaactctgaagtaaagaaaaaacagtggacaccacatatcacatatttgcttcctttctacaagagtcataatgaaattattaatagactgtttatcatttgaagatataaaattagttttaccataatattaaaccatgctgatgaaagttctttgataccagtatgattttgataacattttagtcagctgaggtctgattatttgcatttacgtgttggcaaaatgtaggatctgattcttagagaaagatacgattgttcaagtacatctggttctcgcaatttctctgatgtagtcacagaattcaaaccatttgagagatggattagtcctcataatgatatgcctagaagtaactccttcaaccacaatatagaagcaagcagttctgaagaagatgaagatgagatagaagattggtga</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0242100, RefSeq:Os03g0242100