Os03g0248000

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Revision as of 12:29, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0248000| Description = Autophagy protein Apg9 family protein| Version = NM_001056088.1 GI:115451904 GeneID:4332250| Length = 7415 bp| Defi...")
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Gene Name

Os03g0248000

Description

Autophagy protein Apg9 family protein

Version

NM_001056088.1 GI:115451904 GeneID:4332250

Length

7415 bp

Definition

Oryza sativa Japonica Group Os03g0248000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:7870564..7877978

Sequence Coding Region

7870788..7871730,7873120..7873230,7873330..7873400,7873475..7873552,7874457..7874663
,7874760..7874939,7875142..7875364,7876026..7876346,7876431..7877005

Expression

GEO Profiles:Os03g0248000

Genome Context

<gbrowseImage1> name=NC_008396:7870564..7877978 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:7870564..7877978 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgtccttccgttcgaaggacagaaatgtgcaaccacgatttaattggccatggagaagcgaatcaccattatcagcacaactgctcattgatattccacctgaaatagagttatcggactacagaaggttgccaggttcaggaagcgagagcccatctggacttctccatggtgaaggcttcaaggacgaaccaattgctgacttggatattttctttgaaaggctttatgaatatttctgtgcaaaagggctacgatgcattgttaccaaatggataattgagatgcttaacgtactttttatggtatgctgtattgggttctttttcttaattgttgattggaatgccctcggccatttgaaatgtggtgtagaggcactcgaatccggggaaaaaccatgtgatctaatgcaagtcgttaagcataatccattagttccattcacatttcctaaaatgatcactattggatcaatggttatattgacaacttacggtcttatcaacttcctcaagtttttcgtgcaactcagaagtacattgaatattcgtgacttctactgtaacagtctgaaaattacagatcttgagatccaaaccatctcatggcccaaaataattgagaaggttgtcctgctacagaaatctcagaaactttgtgttgtaagggacctctcggagcatgatattatcatgagaataatgaggaaagaaaattacttgattgggatggtcaataaaggcattatctcatttccaattcgtccttgggtacctggagctggaccaactgtcaaatcccatttgcaaaacaggagaaaccatctgatactcccgaaagccctagaatggacattaaattggtgcatcttccaaagtatgtttgatagtaaattctgtgttcggaaagattttctaacaagcccagctgtgttaaagaagcgacttgtatttgtgggcatttcaatgcttatcctttcaccctgccttgtaatattcccattagtgtacctcattctgagacatgctgaagaaatttataatcaccccagtacagcttcatctagaagatggtcaaacttatcaaggtggatttttagagagtataatgaggtagatcatttcttcagacataggatgaacaacagcgctgtgcactctttaaattacctgaagcaatttccaactccactgatttctataatggcaaaattcatatcttttgtttctggtggtttggctggtgctcttataatcattggatttctgggtgaatctgttcttgagggccatatctttggaagaaatctattctggtatactattgtttttggaacaatagctgccataagtcgaaaagtagtggctgatgaacttcaagtaattgacccagaaggcgctatgtgcaatgttgtccaacaaacgcattatatgcctaagaggtggcgtggtaaagaggacagtgaagtggtgcgaagagaattcgaaacactatttcagtttaccatagtaatgctgcttgaagagatggcctccattttcatctctccttacttgctcatctttgaggtaccaaagcgtgttgatgatattctgcgattcatctcagacttcacgatttatgtagatggggtgggagatgtgtgcagcctaagcttgtttgacttcagaagacatggaaatagaaactatgcttcaccatttgatgcacttaaaacgcttaggagctcccaagggaaaatggagaaatcatttttaagttttcaaagtgtgtatccatcatgggaaccaaatgcagaaggcaaacaattcttaactaacctccaaaagttcaaggaaaagcaaatacggcagcaggctcttgcacaatatcaagcaatggaagcatcaggctttgtggcaagcaccagaggtcacagggatgatatcttccaccaactactccctagtgatatccataaccgtgctgaggccatctcacctgctgtttacaatttgggcccgttaggattgcttgacacagatcaaagaagtcatccatatattctggattggtactacgtctgccatccacctcacttggatagaaccgaggctccttatttcaacgaagtgttccctgagaccagtgagaacacaggttcagcagcatttaaagcatctgaaattgaagaagcaaggggctgggactctgatatggttcccccgcctcgagcagatcgcgatgagtggaactttaaccatgaaagggttcgaagccatatggatgcatcgacatcaagcaatttgtttcatcatgctccagtagaacaccatgataccaaaggaaatattatcgattggtgggatcaagcacctgaacattctactggtcaacaaggaagttttctggagcctccggaatttggaaatcgatatgttgctggtaaccgttccagttatcactctggtgatgtgtctgatggaagtgtggaagagcttgagcgaagctataacagaagtagcagcagctggagaagacctcaagatttgtccactacaaggtatatggacgactctgacattgaggaagggttgaatcttccttttgctgatctcccgcagaaggatgaagatgctcgacatggcacatctgatactaatgaccccacgccagtcggccttcctgtaagaataattcctagaagcagtgaccctgtttag</cdnaseq>

Protein Sequence

<aaseq>MMSFRSKDRNVQPRFNWPWRSESPLSAQLLIDIPPEIELSDYRR LPGSGSESPSGLLHGEGFKDEPIADLDIFFERLYEYFCAKGLRCIVTKWIIEMLNVLF MVCCIGFFFLIVDWNALGHLKCGVEALESGEKPCDLMQVVKHNPLVPFTFPKMITIGS MVILTTYGLINFLKFFVQLRSTLNIRDFYCNSLKITDLEIQTISWPKIIEKVVLLQKS QKLCVVRDLSEHDIIMRIMRKENYLIGMVNKGIISFPIRPWVPGAGPTVKSHLQNRRN HLILPKALEWTLNWCIFQSMFDSKFCVRKDFLTSPAVLKKRLVFVGISMLILSPCLVI FPLVYLILRHAEEIYNHPSTASSRRWSNLSRWIFREYNEVDHFFRHRMNNSAVHSLNY LKQFPTPLISIMAKFISFVSGGLAGALIIIGFLGESVLEGHIFGRNLFWYTIVFGTIA AISRKVVADELQVIDPEGAMCNVVQQTHYMPKRWRGKEDSEVVRREFETLFQFTIVML LEEMASIFISPYLLIFEVPKRVDDILRFISDFTIYVDGVGDVCSLSLFDFRRHGNRNY ASPFDALKTLRSSQGKMEKSFLSFQSVYPSWEPNAEGKQFLTNLQKFKEKQIRQQALA QYQAMEASGFVASTRGHRDDIFHQLLPSDIHNRAEAISPAVYNLGPLGLLDTDQRSHP YILDWYYVCHPPHLDRTEAPYFNEVFPETSENTGSAAFKASEIEEARGWDSDMVPPPR ADRDEWNFNHERVRSHMDASTSSNLFHHAPVEHHDTKGNIIDWWDQAPEHSTGQQGSF LEPPEFGNRYVAGNRSSYHSGDVSDGSVEELERSYNRSSSSWRRPQDLSTTRYMDDSD IEEGLNLPFADLPQKDEDARHGTSDTNDPTPVGLPVRIIPRSSDPV</aaseq>

Gene Sequence

<dnaseqindica>6249..7191#4749..4859#4579..4649#4427..4504#3316..3522#3040..3219#2615..2837#1633..1953#974..1548#attctgtccccgatcccgtcacgtctcctggaaacaccccacccgcttctcgtctcctcgtctcctcgttcgtctctcgcctcgtcttccccgtcctccgcgcgattccccaaccctccccgaagccgcagtccaccgcaagtcgcctgcctcctccgccccgcgccccctccccccgtgcgccggcgatcgccggtgcccgccaggtcggtggagtctattgctctctctctctctctctctccccccattccttccgcgccgctttcgtgctgattttttttagctttggatgaacgagttttcgttttggtgttaggcgttattgggatgagaaatctagggtttggaacggcggtgtgcggaggtgggttgggtgttggtggggagaggtttggctagaagttagctcaactggttgttaagtagatagccgtgaggtccgtgcgggacaccgaattgctttccgtggaggcgacacagacgatgtgaatggtgatatgtactgcgcgattacgtttcggctgcagttgattgatcaattcgtcaacatttctgagcaaaatccgtttcatcattaggaatgaattcatttggcatcacattgctgctgcctctggaaatggaggcactaccctggttggcatctagtgcatgtataggataagttcgtttttagccttattatccatggtgccttttcggtttacctgcgttaagcttgttcataattttgtttaggctcagattgtatgaaaaaggtagctgtatatagacgtacaagtaagagcgttagctcagtttcttcttagctcccatacttgtgagtttttacacacatacattttgttgtacttgctggaaattgctggtatgcaaagtgtgattcattgaattccttttggttttggtgacaggttatttcttgtggcatggcaaggatacatattggtcttggcttgttctttcatgaatgatgtccttccgttcgaaggacagaaatgtgcaaccacgatttaattggccatggagaagcgaatcaccattatcagcacaactgctcattgatattccacctgaaatagagttatcggactacagaaggttgccaggttcaggaagcgagagcccatctggacttctccatggtgaaggcttcaaggacgaaccaattgctgacttggatattttctttgaaaggctttatgaatatttctgtgcaaaagggctacgatgcattgttaccaaatggataattgagatgcttaacgtactttttatggtatgctgtattgggttctttttcttaattgttgattggaatgccctcggccatttgaaatgtggtgtagaggcactcgaatccggggaaaaaccatgtgatctaatgcaagtcgttaagcataatccattagttccattcacatttcctaaaatgatcactattggatcaatggttatattgacaacttacggtcttatcaacttcctcaagtttttcgtgcaactcagaagtacattgaatattcgtgacttctactgtaacaggtaacatttctgattaatatgtgtgtttatagctcagtgcaatcatcaatgactgaatccaccttctcttttctttttgtgtagtctgaaaattacagatcttgagatccaaaccatctcatggcccaaaataattgagaaggttgtcctgctacagaaatctcagaaactttgtgttgtaagggacctctcggagcatgatattatcatgagaataatgaggaaagaaaattacttgattgggatggtcaataaaggcattatctcatttccaattcgtccttgggtacctggagctggaccaactgtcaaatcccatttgcaaaacaggagaaaccatctgatactcccgaaagccctagaatggacattaaattggtgcatcttccaaagtatgtttgataggtaaggaagtctgtagctctgttacttttaactagctaacattggattattcggccaaagtattttgataacatttgtttggcaaatactctgctgtcaacataatgaatctaggtatctttttcttccacattaatcctgcgtttgggagaaagcgggtgaagacacccttaagttgtcatgtaataacacttaattgcacaagagagtgcaaatgtccctaccaatctttatcattctcttttgttatacattatgttcaatctgtgtggaatacagaattgttgatgttatgcataattgtctctagctagctggttactaaattctaaacatcttaactcaagctttactgctttactgattttctgatgacttcatagagatatcgagtaatttagatattcaatctgtgtaaaagctggatgcttttcttcacccccatctattcccatcaaacagctcttatgtggattttgcacaatagcacctaaagacgtatttgtgctaagataccctcccagcttccagtttgtacaacatccgctgaaaccttctagcaagagctcgcacatcgcattgggatgttccacgatttttttgtgtgtgtagttttaacctctaaaactatactgaaagccaatatcattttcttctgcagtaaattctgtgttcggaaagattttctaacaagcccagctgtgttaaagaagcgacttgtatttgtgggcatttcaatgcttatcctttcaccctgccttgtaatattcccattagtgtacctcattctgagacatgctgaagaaatttataatcaccccagtacagcttcatctagaagatggtcaaacttatcaaggtggatttttagagagtataatgaggtaccttcttttgcagagatattattactattatgatgcagtcattgtcctgtccagtatttcttctaaatgcctgccatgtgcttactgtattatattaactgcaagctctgccatttgttgaggcctatagatactatcatgctatgcaatcagccttgtttttcttcgtctaaagctcagttgcttacaataatttcaggtagatcatttcttcagacataggatgaacaacagcgctgtgcactctttaaattacctgaagcaatttccaactccactgatttctataatggcaaaattcatatcttttgtttctggtggtttggctggtgctcttataatcattggatttctgggtgaatctgttcttgagggccatgtaagttatttcttccactttttctcatttgctattacacatttacacatgtcttattgacctactaaatctcacatacattcatatcttctgaagatctttggaagaaatctattctggtatactattgtttttggaacaatagctgccataagtcgaaaagtagtggctgatgaacttcaagtaattgacccagaaggcgctatgtgcaatgttgtccaacaaacgcattatatgcctaagaggtggcgtggtaaagaggacagtgaagtggtgcgaagagaattcgaaacactatttcaggtattttatcagttcgagagaattttgcatataccatatataatcaattagatatttagtgttctgtatactgtactacttggctttggaacttcaaccatcaccatcatcaaattttctagttatttgtgattctgctctttatttttttgtcattgaaagaactgcgcaaatgctctgggctgatgtccacataatcttatttgaacaaaattgtacaaatgcaaggtgcgcacacaaaagtacacgaaaaaaaggtggtttggcaaagagttgactgagagaattgtgcaatgtgcatataccgtactgaatcaactaatcaacatacttacttgtcctatgtgctgtacaatttggctttggaatgtcaccaatcactatcattcattttgtcagcactcatcgtctttctttattgagagaactatgaaaggttgtatgttgatctcaacagaatgttattcaacaaaattgtacaagtgcaatgcccaccttagagaagtacatgaaaaagtgacggcccaactaagttacatcgcagtaacgctgacaatcgtaaactcatttgatattaaagttgttcgtggccactgggtgattcagcagttgcatttttaaatgagtctcacttgcttattttgctaggtgaatctggaaataatagtgttcaaattctctgatagaactaatgacaaagcttggcattttctagttgttttatattgctttcagttaaagcgctatatctgaagatgaaaagaaaatgagtttctctttgtttaagtgctttgcagtctagatatcagtaccttacatttgtatcttggttgatttacgtttaatactctattgtccatatcatattgctctgaattttaactaagtaattttacaaatgcagtttaccatagtaatgctgcttgaagagatggcctccattttcatctctccttacttgctcatctttgaggtaccaaaggtaatgttctgaacttgctcaacaacagtgttttttctaaagttctttgacagtgaactccttttattatacagcgtgttgatgatattctgcgattcatctcagacttcacgatttatgtagatggggtgggagatgtgtgcaggttctctcttgatgtttcttaagaaatgaattttgttatcatatattgccactgggtttttaaaacatttaacatcatttattctctgtgtttcaatagcctaagcttgtttgacttcagaagacatggaaatagaaactatgcttcaccatttgatgcacttaaaacgcttaggagctcccaagggaaaatggagaaatcatttttaaggtacatttaatttcaagtttgaattacttcatgtgtttcttactagctattatattgtactcatattgttattaaaaagatatcttaagggccatcatttgtttattgaaatggctttggtgtactttagtagttcttggctctgaggttgtactgtggtatgatttgcacgctattgttatttcatactcttgttcaaactaggggggtattttagttctatgaacattttacgaggaaatgtgttagtttgtctatgtagtttgcccatgtcaacagcatagtgcatatggtctagactgtacaagtcaacattaactatggatatatgatgaaaatatttctcagaaaatcacaacaaatgtgtttccagcatttaattgaatttaccagagtattatttgagtatactgttttgtccataaatatggccaaagctgaacacttgaccatgatacttttttgggtgtcttcttgtcagcactatagactctgtagaatataggcactacggtgctgccctcgtcacatcatattccaagaaagcgacatccatttttggtttagtactttagtccaccatgtacattgcattttcaagagtgaataacagaataagcaaagttgtactccaagtttcacttgaggcttaatttggtccttgacgtttcagtccgtccatattagaccattagtccttcatgttttcattttagttcaaactcatcgttggacccacttgtgaagacatatagctaaatctaattagcatctctcttgataaatgactattattccctaatttcacatgtataagaaaaaggaaaagaaaaagacaaatatgtactatttggccagtgaacctgtttctcaagacccctccaatacccaatggttgtgtgctgtttttttttttctgttgaaatttgtgtacaatgagttctcttagataagggatattttgtaatagaaatgttgacttattattggctaatcaagtgggtgcaagtatgatttcgaaccaaaacgaatacttagaggacctgtgtggacaaaatagaacttaaaggaccaaattgagcctctggtggaactttagggactagattagctatccacccaacttccaactgtatgcaatgtgccctgctgttgtcctacaggcctaatggatactggccactttgtactatgtatagttaggaggttttagttagtcacaagtgttgcagccaagggtagatccaggcgtaggacacaacgcccttgtaattggttgttaccaattgcaaaattcgaagatacaaatggcctagcttaatacaagctagctcagcccaaggtttaatgctaaaaataggtctaattctattatatgattgtttacagttttcaaagtgtgtatccatcatgggaaccaaatgcagaaggcaaacaattcttaactaacctccaaaagttcaaggaaaagcaaatacggcagcaggctcttgcacaatatcaagcaatggaagcatcaggctttgtggcaagcaccagaggtcacagggatgatatcttccaccaactactccctagtgatatccataaccgtgctgaggccatctcacctgctgtttacaatttgggcccgttaggattgcttgacacagatcaaagaagtcatccatatattctggattggtactacgtctgccatccacctcacttggatagaaccgaggctccttatttcaacgaagtgttccctgagaccagtgagaacacaggttcagcagcatttaaagcatctgaaattgaagaagcaaggggctgggactctgatatggttcccccgcctcgagcagatcgcgatgagtggaactttaaccatgaaagggttcgaagccatatggatgcatcgacatcaagcaatttgtttcatcatgctccagtagaacaccatgataccaaaggaaatattatcgattggtgggatcaagcacctgaacattctactggtcaacaaggaagttttctggagcctccggaatttggaaatcgatatgttgctggtaaccgttccagttatcactctggtgatgtgtctgatggaagtgtggaagagcttgagcgaagctataacagaagtagcagcagctggagaagacctcaagatttgtccactacaaggtatatggacgactctgacattgaggaagggttgaatcttccttttgctgatctcccgcagaaggatgaagatgctcgacatggcacatctgatactaatgaccccacgccagtcggccttcctgtaagaataattcctagaagcagtgaccctgtttagactgaaaagctctcagatacgtatgtttgtgcatggttgtaaatatctgtgtgaaccacgtcacaaacttcaccaaaactggcaaacgccgcaaattcatttgtacagaaccacatattacctcactgtatagtcttctccctgccctcctagggattgtggagcaggggaagaaccattcttttgcagcacgaaatgcatggatccagttgttgcctcgtttc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0248000, RefSeq:Os03g0248000