Os03g0251500

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Revision as of 12:29, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0251500| Description = Similar to T-cell immune regulator 1 transcript variant 3 (Fragment)| Version = NM_001056107.1 GI:115451942 GeneID:43...")
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Gene Name

Os03g0251500

Description

Similar to T-cell immune regulator 1 transcript variant 3 (Fragment)

Version

NM_001056107.1 GI:115451942 GeneID:4332270

Length

7038 bp

Definition

Oryza sativa Japonica Group Os03g0251500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:8033059..8040096

Sequence Coding Region

8033253..8033402,8034018..8034062,8034518..8034637,8034716..8034823,8035149..8035256
,8035528..8035701,8035947..8036084,8036536..8036643,8036759..8036866
,8036979..8037127,8037709..8037862,8038036..8038196,8038284..8038490
,8038596..8038779,8038867..8038950,8039039..8039238,8039369..8039428
,8039524..8039728

Expression

GEO Profiles:Os03g0251500

Genome Context

<gbrowseImage1> name=NC_008396:8033059..8040096 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:8033059..8040096 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctacctcggcgaactcggcctcctccagttgaaagaccttaacgcagacaagagtccttttcaacgaacatatgctgcccagataaaaaggtgtggtgaaatggctcgcaaattaagatttttcaaagaacaaatgtccaaagctggcatatcaacttctgcacaattaactgaaatttcgttggactttgatgatttggagataaagcttggagaactggaagctgaactagctgaagttaatgcaaacaatgaaaagttaaagcggacctacaatgagctgttggagtacagtactgttcttcaaaaggctggtgaatttttctattcggctcaaagaagtgctgcggcgcaacagagagaaatggaggcaaatcaatctggtgagagttcactggagagccctctgctggagcaggatacgttaacagatgcatcaaaacaagtgaagcttggatcattgagtggtcttgtaccaaaggaaaaggcaatggcttttgaacgcatcttattccgtgccacgaggggaaacattttcctcagacaagagtctgttgatgaacctgtcactgacccagtctctggagaaaaggttgccaaaaatgcatttgttattttctactctggggatagagcaaaagccaaaattctgaagatatgtgatgcgttcaacgcaaatcgctacccatttccagaagatgttgctagacaattacatgctgttcaggaggtatctgcaaagatatcagagttaaaggcaacaattgacatgggattagcacatcgtgacaatatattgaaaaatatcgcgtctgagtttgagaattggaaccgtctggcaaataaggaaaaaataatttaccacactttgaacatgttgagtgttgatgtgacaaagaaatgcttagttggtgagggctggagtccagtttttgcaacaactcagatccaagatgcgctccagcgagctactcttgatagcaaatcccaagttggttcaatttttcaagttctcaacacaacagaatctcccccgacatatttccagacaaataagttcacttcggctttccaggaaattgttgatgcatacgggatagccaaatatcaagaagcaaaccctggtgtattcactattgtcacttttcctttcttatttgctgtcatgtttggagattggggacatggaatttgcatattggtttcgacactctatctgataatccgagagaagaaatttgcttcacagaaacttggagacataatggagatgatgtttggtgggcgctatgtaattataatgatggcactcttttcaatctatacaggattaatatacaatgaatttttctctgttccatttgagctttttggtaaatctgcttatgcatgccgtgatccttcttgtggagatgctgcaacagaaggattactcaaggtaagacggacatacccttttggtgtggaccctgtatggcatggcagccgcagcgagttgccgtttctcaactcactgaagatgaagatgtcaattcttcttggagttgcacaaatgaaccttggaattgtgattagttactttaatgcgaaattcttcaggaacagtgttaatgtgtggtaccagttcatcccccagctgatcttcttgaacagcttatttggttacttatccatgctcatcattatcaagtggagcacgggggcaaaagcagatctgtaccatactatgatatatatgttcctcagtccaacagatgaacttggggagaaccaattatttcctggacagaaaacagtgcagcttgttttacttctgcttgctctggtgtctgttccctggatgctgatcccaaagccatttttcttgaagatggagcatgagcgaaggcatcaaggacaacaatatgcaatgcttcagagcacagatgactcagtggtagcggagatgggacatcataatggctcgaaccaccatgaggagttcgagttcagtgaagtttttgttcaccagttgatccacacaattgagtttgttcttggggcagtctcaaatacagcctcatatcttcgtctctgggctctcagtcttgcacactcggagttgtcaagtgtattctatgacaaggttctcctcctagctttcgggtacaacaacattcttatccgcatcgctggcattaccatcttcatctgtgcgacagttggtgtcttgcttgttatggagaccctaagtgcattccttcacgccttaaggctacattgggtggagttccagaacaaattctatgagggcgatggatacaagtttgcgcccttctctttcgcactgatcagtgaagaggaagactga</cdnaseq>

Protein Sequence

<aaseq>MARGGGGGCCPPMDLMRSEAMQLVQVIIPTESAHLTVSYLGELG LLQLKDLNADKSPFQRTYAAQIKRCGEMARKLRFFKEQMSKAGISTSAQLTEISLDFD DLEIKLGELEAELAEVNANNEKLKRTYNELLEYSTVLQKAGEFFYSAQRSAAAQQREM EANQSGESSLESPLLEQDTLTDASKQVKLGSLSGLVPKEKAMAFERILFRATRGNIFL RQESVDEPVTDPVSGEKVAKNAFVIFYSGDRAKAKILKICDAFNANRYPFPEDVARQL HAVQEVSAKISELKATIDMGLAHRDNILKNIASEFENWNRLANKEKIIYHTLNMLSVD VTKKCLVGEGWSPVFATTQIQDALQRATLDSKSQVGSIFQVLNTTESPPTYFQTNKFT SAFQEIVDAYGIAKYQEANPGVFTIVTFPFLFAVMFGDWGHGICILVSTLYLIIREKK FASQKLGDIMEMMFGGRYVIIMMALFSIYTGLIYNEFFSVPFELFGKSAYACRDPSCG DAATEGLLKVRRTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIVISYFN AKFFRNSVNVWYQFIPQLIFLNSLFGYLSMLIIIKWSTGAKADLYHTMIYMFLSPTDE LGENQLFPGQKTVQLVLLLLALVSVPWMLIPKPFFLKMEHERRHQGQQYAMLQSTDDS VVAEMGHHNGSNHHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELS SVFYDKVLLLAFGYNNILIRIAGITIFICATVGVLLVMETLSAFLHALRLHWVEFQNK FYEGDGYKFAPFSFALISEEED</aaseq>

Gene Sequence

<dnaseqindica>195..344#960..1004#1460..1579#1658..1765#2091..2198#2470..2643#2889..3026#3478..3585#3701..3808#3921..4069#4651..4804#4978..5138#5226..5432#5538..5721#5809..5892#5981..6180#6311..6370#6466..6670#gtctccccgttcagcgagccagagaggaaacgaaccgatcgatcaggccgtcgctccgctcgccgccgcgcgacgcgacgcgacgcgacacgccggagacggacgacgagcgctttgccttccccgcgcgcgcgcgcgcgcgcacggaggcggacgctggtcggtttggtcgggtgcgaccgggaacggcggccatggcgcgcggcgggggcggcgggtgctgcccgccgatggatctgatgcggtcggaggcgatgcagctggtgcaggtcatcatccccacggagtcggcgcacctcaccgtctcctacctcggcgaactcggcctcctccagttgaaagacgtaagtccgtatatccgctacccccgtcgattcggcggctgttcgtggctgacaaattcgccgagagagggagggggattcggagtggtgcctgtcccgatcgtgtcgatctgaggcgggggatcggttggtagtgccccgtgctcgcgatttcctgggaattagcgggcgtttcccgtcggcattgtgaatttgggcattgagattgatgtggtgttacggcgtctacttgttcgcttcactttttttcgttgaaaaccgtgatattgtttgcttcactttttttcgttgaaaaccatgatatgcaggttttgcattggcgcgattgggtgacaatgttgtttggaacagaattcacgtagggatacattattctaatttcgatgcagtacagagttgtcttctctgtaatgcgcccacactagcaatagcaagtttaaagttacttttactctgttagactgttagtataaaattgtactcctgtattagtagatcatgggaaatgctgatatagtttgaccctcgcaattctggaacaactcaggatgctgcctttgttttttgtcctatcccttagaggttaaactgatgattttatttttttttcctcagcttaacgcagacaagagtccttttcaacgaacatatgctgcccaggtactttgctcgtttatcttttttttatcacttatgttatgttatggctgagactaattgataaaaagctttttacagcatgttgaaactgttattctccccttgttcttatatagccctttcagtaatgaactagagtattatctattgagatttaaaaattataagatgtgacattggtataaatgaggaaaaagtccaaatatccccccctaaactttgaatgaaagtccatctagtacactaaactttaaaaccggacatctaaccccctgaactttgtaaaactgttcatatttctatctaaagtttaggatggtatttggactttttaaagtttagggtgctatatggatttctatctatatagtatatctcatgttcatagttttcattaccttactgccttatgttaattttccctgttttcatgctgggatctactcgttgtgcagataaaaaggtgtggtgaaatggctcgcaaattaagatttttcaaagaacaaatgtccaaagctggcatatcaacttctgcacaattaactgaaatttcgttggactttgatgatttggaggtgtgtcaatcgaatggatttttcctgattgcatgcagaatataaatctagtattattttaacacttttgaataacagataaagcttggagaactggaagctgaactagctgaagttaatgcaaacaatgaaaagttaaagcggacctacaatgagctgttggagtacagtactgttcttcaaaaggtatgactctgttatcttcagtatactttcatgaatattgtcaacatcatgttgaacttgagatatagcgtgtctgttagatcttttgcaaaccacttgtttccattcctggttcctcacattgttgccagaacaatactatatgaaattgccactatcttaactccaaatgatttcacccatggggtaatgtgcacatatttttacagtacactctctctcaagtcatggtcgtactacacatgtagtacctaagtagcctgtttctctcgccaatctgctttttgctgactctttatttattattattttctttcattttcaggctggtgaatttttctattcggctcaaagaagtgctgcggcgcaacagagagaaatggaggcaaatcaatctggtgagagttcactggagagccctctgctggagcaggtaaaactatcatactgctcctccctgtacatggacattcatgtagtaccattgccatgatgtgcctcaagattgatgttgactttcaaattttaaacacacaacatcccatattgtagtaataactttaatcattcacaaatctcagagcactttggatttacaggatagtacatggaccatacatgcatatacgtgtgtaattgcaacccccaccttttttttttgttttctgtttgcctctctgatatgatcttggttacccttttaggatacgttaacagatgcatcaaaacaagtgaagcttggatcattgagtggtcttgtaccaaaggaaaaggcaatggcttttgaacgcatcttattccgtgccacgaggggaaacattttcctcagacaagagtctgttgatgaacctgtcactgacccagtctctggagaaaaggttgctgttatattttctgacgtttacagtgcattttttgttctttgtatattccaccatgttgtcctttcaaagtaatcttggtatttggattatacatctcggttcatttgcgccctgataaaaagaactttgttctatgagtgatgaagttattttttatatatcttacttcctgtctagtcatgaagttattttattatttgttccaactctaagtcttcattctttgtatgataacacaggttgccaaaaatgcatttgttattttctactctggggatagagcaaaagccaaaattctgaagatatgtgatgcgttcaacgcaaatcgctacccatttccagaagatgttgctagacaattacatgctgttcaggaggtcaggtcttggaaatgtgatttgttaatattctttgatgaaattctttctagtatttcgaaatttagatatagtcctgaattgctttcagaaggtagtgaggatgccaaccgttgagagaatcatctgcacgagttgccctttatggacattcttgtgctttgcttgtgatatgtccaatgttaccatccctattctgatgtcactgctgtcatttcaatttcgaatttgaaaaatgttaattaattattatagatttataatagctagactttgttctgtgccttccaatcattacttttgctgttggtgactaatgaaaatgatttgctgctattgcatcttgtttgcaccataaggagatatgtcattgggagaaacttgttttgcagttgtactactatgaatttcagtcaataaacatataaagtctatgcttatgaatttacaggtatctgcaaagatatcagagttaaaggcaacaattgacatgggattagcacatcgtgacaatatattgaaaaatatcgcgtctgagtttgagaattggaaccgtctggtaagctatcctcttatgtgataaattccatatgttagaaaattccgaaatccaccagtcaggtcattatttcagttctatatatatgatactaattagcatacaaatgctccaggcaaataaggaaaaaataatttaccacactttgaacatgttgagtgttgatgtgacaaagaaatgcttagttggtgagggctggagtccagtttttgcaacaactcaggtaattgatacaccaccctggtgctaacaatttattagcctactgtttccatttgtttatttgggagattattcttcatgtgatctcaatgatttacaactttattttgcagatccaagatgcgctccagcgagctactcttgatagcaaatcccaagttggttcaatttttcaagttctcaacacaacagaatctcccccgacatatttccagacaaataagttcacttcggctttccaggaaattgttgatgcatacgggtatgtttcagagggctctgagatgctacttttggtttctcttttggctttggaactgaaaataatatattttcttgtgggttgttccaagttgtttatagcaccatgggatatgagacttctattattgtccccccgcttttggtttcatctcagaaatgatgctcttttcaccattcttttgctggactcactattttcatgtgaaatcgacaaacttttggttcgcttaaagaaaagaaaggaaaattgccataattcactgttcctcttcaataggcaaagacatgccatcattccctgttatttgctcctcaattgtgcattctaagtgaaacatttccttttttgtttcccttttgtggacatgtctaccacgttgaaatcattgtgttcatattgtcaaagaagcacttaaacttgcaataggaatttccagaatttttgtgcttatgggaaatatattattttatctgaataaaattagcattgactcctgaaaaatcaataaagagcttgctgtttgtttgggccaaatggtttagttaggaactgctaactttgtattacatctgatacaggatagccaaatatcaagaagcaaaccctggtgtattcactattgtcacttttcctttcttatttgctgtcatgtttggagattggggacatggaatttgcatattggtttcgacactctatctgataatccgagagaagaaatttgcttcacaggtttgcatactggtcatcattttactattgtgttgacaatcattttgaggactttgttctttggaatatgtagtagtgatcccaaagagtttagagcaagtatttatattctgaaagccccaaaaatttacatatgtgataaagctgtatctgatgtctgtttcttattgcagaaacttggagacataatggagatgatgtttggtgggcgctatgtaattataatgatggcactcttttcaatctatacaggattaatatacaatgaatttttctctgttccatttgagctttttggtaaatctgcttatgcatgccgtgatccttcttgtgggtaagaaaaagtttcaaacaaaaccacgtttttatccctttaaaaaagaatatttatgcctacttattgtttgtcttgtggatttagagatgctgcaacagaaggattactcaaggtaagacggacatacccttttggtgtggaccctgtatggcatggcagccgcagcgagttgccgtttctcaactcactgaagatgaagatgtcaattcttcttggagttgcacaaatgaaccttggaattgtgattagttactttaatgcgaaattcttcaggaacagtgttaatgtgtggtaagtttattgtctcgtgttgaatgcccttttatgtaacactctactttgagatgagattatgaccagattattctctattgctgctgtatgcttttgtaacaggtaccagttcatcccccagctgatcttcttgaacagcttatttggttacttatccatgctcatcattatcaagtggagcacgggggcaaaagcagatctgtaccatactatgatatatatgttcctcagtccaacagatgaacttggggagaaccaattatttcctggacagaaaacagtgcaggtccgtattcgttattgttatgcagaattgcagactatgacatgaacttgtggataaatactaaaattttctccatttcttatgcagcttgttttacttctgcttgctctggtgtctgttccctggatgctgatcccaaagccatttttcttgaagatggagcatgagcgagtaagttgtatatgatatttcaaattctattgctgtttacgtgttgaattactaatgtgctgacaatacttctgtttgattctatcagaggcatcaaggacaacaatatgcaatgcttcagagcacagatgactcagtggtagcggagatgggacatcataatggctcgaaccaccatgaggagttcgagttcagtgaagtttttgttcaccagttgatccacacaattgagtttgttcttggggcagtctcaaatacagcctcatatcttcgtctctgggctctcaggtacttctagacattcagcatcaccgcattactttgaacagccttactccctcatcatcccacttttgatctataacaatgcactccttgttagccactaataatcgattaaattgtattctttatacagtcttgcacactcggagttgtcaagtgtattctatgacaaggttctcctcctagctttcgggtaagaactaagaagcctccctctccgcctcctctccttttctccctatctatgtagccgctatctggagctcatttttatgtgccttcttgtaggtacaacaacattcttatccgcatcgctggcattaccatcttcatctgtgcgacagttggtgtcttgcttgttatggagaccctaagtgcattccttcacgccttaaggctacattgggtggagttccagaacaaattctatgagggcgatggatacaagtttgcgcccttctctttcgcactgatcagtgaagaggaagactgagtttgcgcaattattgcatctattgtagcgtgtaatttcttggggcgtccttttttctcaaagcgtcaagtatttatcacggaagaatcataaacctccagtttgttccttcatcaggaaagggactagcagcatcattttttgctttgctacgaatgattcgtggcaagatgattttttgggtggccgttggcacatcgggtggcatcacccttattttggtgtaaggctaataaataataagtaaattctgcactcgggttgccatttgggcaattagttttctgcacataaataaacattgtatcaaatgttaatattccattgggttcttttattgtcaataaagagtgcggcctacattcttt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0251500, RefSeq:Os03g0251500