Os03g0253100

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Revision as of 12:30, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0253100| Description = Phosphomevalonate kinase Erg8 family protein| Version = NM_001056112.1 GI:115451952 GeneID:4332275| Length = 4197 bp...")
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Gene Name

Os03g0253100

Description

Phosphomevalonate kinase Erg8 family protein

Version

NM_001056112.1 GI:115451952 GeneID:4332275

Length

4197 bp

Definition

Oryza sativa Japonica Group Os03g0253100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:8118293..8122489

Sequence Coding Region

8118468..8118734,8118904..8119026,8119409..8119636,8120237..8120338,8120449..8120844
,8121540..8121592,8121706..8121817,8121921..8122019,8122113..8122263
,8122350..8122357

Expression

GEO Profiles:Os03g0253100

Genome Context

<gbrowseImage1> name=NC_008396:8118293..8122489 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:8118293..8122489 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggaagtggtggcgtcggcgccggggaaggtgctcgtcgcgggaggctacctcgtgctggagcggcccaacgccggcctcgtcctcagcaccagcgcgcgcttctacgccatcgtccgcccgctccgcgacgagctcagccacgactcctgggcatgggcgtggacggatgtgaaagtgacctctcctcagctctcccgggaggccacctacaagctctccctgaagaaatcaacgctccagttgacgtcttcaagggaatctgcaaacccttttgtggagcaggcagtgcaattctcggtagcagctgctaaagtgactgtcactgacaaagaggggaaggaggcactggacaagttgcttttgcaaggtttgcacattacaattttgggctgcaatgatttctattcttatagaaaacagattgaagcacgtggccttcctctaactccagaggtattgctttcgttgcctccattctgttcaattacatttaattcagaagttgctaatggaacaatgactggagaaaattgcaaacctgaagttgccaaaactggacttgggtcatcagctgccatgaccacatcagtagttgcagctcttcttcactatcttggaactgttaacctttcatgtttgggccaatcttccggtggcaacgcagctggacgagatcttgacttgctgcatgctattgctcaaagtgcacattgtatagcacaaggaaaaattggcagtgggtttgatgttagtgctgctgtctatgggagtcaacgttacacaaggttttctccagaaatattatcctcggctcaggttacaggtgggcactgcatggcagatgtggtggcagatattgttacacagagttgggatcatgagaaggttaagttttccttgcctcctctaatgtcccttcttctaggggaacctggaactggaggatcatccactccatcaatggttggatctgtgaaacagtggcagaagtcagaccctcagaaatccaaggagacatggagtaaattggggattgctaattcagtgcttgagaaccaactgaggaacctaaacaaacttgctgaagatcactgggaagcctatgaatctgttttacgatcctgtagtcgtctcacgtgcagtaagtggacagaggtggctaccaatcaacatcaagaactaattgttagatcattactggccgcaagagatgctttccttgaaataaggcttcatatgcgagagatgggcatagcagctggtgttccaattgagccagaatcacaaactcaacttctggatgccactatgaatatggagggtgttctactagctggagttcctggggccggtggctttgatgcagttttctcagtgattttgggtgaagcaagtgatgctgtagccaaagcttggagctcagctggtgttctccctcttcttgttcgagaagatccccgaggtgtttcattggaagctggtgacccaagaacaagggaggtgtcaaccgctgtatcatcgatacaaataaactga</cdnaseq>

Protein Sequence

<aaseq>MEVVASAPGKVLVAGGYLVLERPNAGLVLSTSARFYAIVRPLRD ELSHDSWAWAWTDVKVTSPQLSREATYKLSLKKSTLQLTSSRESANPFVEQAVQFSVA AAKVTVTDKEGKEALDKLLLQGLHITILGCNDFYSYRKQIEARGLPLTPEVLLSLPPF CSITFNSEVANGTMTGENCKPEVAKTGLGSSAAMTTSVVAALLHYLGTVNLSCLGQSS GGNAAGRDLDLLHAIAQSAHCIAQGKIGSGFDVSAAVYGSQRYTRFSPEILSSAQVTG GHCMADVVADIVTQSWDHEKVKFSLPPLMSLLLGEPGTGGSSTPSMVGSVKQWQKSDP QKSKETWSKLGIANSVLENQLRNLNKLAEDHWEAYESVLRSCSRLTCSKWTEVATNQH QELIVRSLLAARDAFLEIRLHMREMGIAAGVPIEPESQTQLLDATMNMEGVLLAGVPG AGGFDAVFSVILGEASDAVAKAWSSAGVLPLLVREDPRGVSLEAGDPRTREVSTAVSS IQIN</aaseq>

Gene Sequence

<dnaseqindica>3756..4022#3464..3586#2854..3081#2152..2253#1646..2041#898..950#673..784#471..569#227..377#133..140#gctcgcgatcctcctcggttcctccgcctccgtcagcgacctcggaaggcggcggcgcgcgtcgtcgtgctgctctccgccgcgcgccacccggccttcccgcagctccggatcgcgtccccccagctgagcatggaagtgtgagtgctctctacttggcttcgattgggcttggaagtgtgggcggagagggctccgatctgatcgtgttcgatcgctgtggcagggtggcgtcggcgccggggaaggtgctcgtcgcgggaggctacctcgtgctggagcggcccaacgccggcctcgtcctcagcaccagcgcgcgcttctacgccatcgtccgcccgctccgcgacgagctcagccacgactcctgggcatgggtgagccccgagccccagatttctcgaacaaactttactagtagcatcgcggagaattgctccttactctgccgagcacctgtaccatactaggcgtggacggatgtgaaagtgacctctcctcagctctcccgggaggccacctacaagctctccctgaagaaatcaacgctccagttgacgtcttcaaggcaagtcattgatcatttgctgggattgtggcagcagcgctctggtctgtagttgttttcggaattcacttttggtgatagtgttaacaacttaatgttgcagggaatctgcaaacccttttgtggagcaggcagtgcaattctcggtagcagctgctaaagtgactgtcactgacaaagaggggaaggaggcactggacaagttgcttttgcaaggttttgcgattttagtctgaagttttgctcctgtgcaaatcatgtttttgtatactatgctatattttgatttcgtttagttgttaaattttcatctctatttttttttgtaggtttgcacattacaattttgggctgcaatgatttctattcttatagaaaacaggtaaagcttatttccttaattagcttgcacgtatgcttgcctttagccttttgatgagcttcacagcaccaaccccaggctagaagtcaaaaaagaagtgagatttaacctgaacgtggccctagttggttatttcagctttgcgaaccacctaatcttaaacatatattttcttcatattccactaaagcagtaacaaactcatttgccacttgccagtgcctaatttatggattaacatgataatttactgaaaagaggtagctcaggtagaaccataagggagaagttgtactgtgctttgtaatcggtattttctctttgtatatccgtggaaaatgtttacaattcacctatctgaaactgcaataaattgcacaattatttagaggcattgctttgaggtctgttctttctcttatacagttaataaatttgatatttgttcgtgtgtgctctatgtggtcatgatatcgtttatcatgtaaacaaataaagattcgatgggcatgcaaaggatgaaccatttgtaaataaataaaaaaaaaatcagtgcagataggttgcacggttctataaactgaaatatactctcttcccatgtttaacttatgtgtgaattacaatgcagatcacccttaaagagttgtgccactgttaaataattagcttgctattttctatcgtttctccagattgaagcacgtggccttcctctaactccagaggtattgctttcgttgcctccattctgttcaattacatttaattcagaagttgctaatggaacaatgactggagaaaattgcaaacctgaagttgccaaaactggacttgggtcatcagctgccatgaccacatcagtagttgcagctcttcttcactatcttggaactgttaacctttcatgtttgggccaatcttccggtggcaacgcagctggacgagatcttgacttgctgcatgctattgctcaaagtgcacattgtatagcacaaggaaaaattggcagtgggtttgatgttagtgctgctgtctatgggagtcaacgttacacaaggttttctccagaaatattatcctcggctcaggtataaaaaaaaaaactgtcattaccagatagttgtctatctaaaaggttttctattataaagcttgccatatctgattggctgataatatatctgcacaatatttacaggttacaggtgggcactgcatggcagatgtggtggcagatattgttacacagagttgggatcatgagaaggttaagttttccttgcctcctctaatgtcccttgtaagttaaaaagaacttatgattgatgactaggtttcctaaatggtcaataaactatttaacgggctgtcaccagtcattagaaaaattatgggtatgatgattgccttataagatttacagcttgattagaggttagttgcacttctattgtgcctttttaaccatcagttcatggctgttttttattatcacagtttgtgagaaaatactgttataagcacgaatgctacaaatcatgcttgtttttttctcagtaagaaatgaacatgctagtttttgtgatcactatgcattcctcaaccagaacgtagtttgtaggtttgcattctcttaaaaatatctatccttttgatttaggtgacttgaaatgcagaacttttagatgaagctttaagggcactacccagaaacgcctttctgtttacaaggcacagcagagatcagacattttttgtgagaacgcaatatgaacaatctatccaatattctttgcagtgttatttgattgcttgttgccttattgattagggagattgtgttctgttcgttgattgtaaggataagtactacttctgactatagggaattttttgttagcttctaggggaacctggaactggaggatcatccactccatcaatggttggatctgtgaaacagtggcagaagtcagaccctcagaaatccaaggagacatggagtaaattggggattgctaattcagtgcttgagaaccaactgaggaacctaaacaaacttgctgaagatcactgggaagcctatgaatctgttttacgatcctgtagtcgtctcacgtgcagtaaggtaaataactagattacatattcttatatcaaacattcaatattgtaaacatataatatatttgtttcaatgggcaagaagaaatcatgttgttatggttaataatatgattgttaactgtttagactccatcaaggatcacggttatatagtgcataaataatgcaactgttatcctggaaaagtgttttttgatggaccagagcttgaaccatccaattttttaacagcatcttctacacaattctgatttctgaaatacttatctttgttgtttgcatgcttcttgttcttagttatcaccaggtgcatctgtgaatttggaaagagaactcgtctttcagtactatatgctaaaaccttttctctttgttcttgcaagtggacagaggtggctaccaatcaacatcaagaactaattgttagatcattactggccgcaagagatgctttccttgaaataaggcttcatatgcgagagatgggcatagcagctggtgttccagtaagacttagttccttttaatgaaattatggatgttgaagataacatgatcgattcttctacatggtggctggcatagttacatctagacaaattgtttagctattaatttgtagataatggggacattatagtaatatacacctgtctcgttgtcctcattttgcagattgagccagaatcacaaactcaacttctggatgccactatgaatatggagggtgttctactagctggagttcctggggccggtggctttgatgcagttttctcagtgattttgggtgaagcaagtgatgctgtagccaaagcttggagctcagctggtgttctccctcttcttgttcgagaagatccccgaggtgtttcattggaagctggtgacccaagaacaagggaggtgtcaaccgctgtatcatcgatacaaataaactgataatgttgtttgaattccgttagatttattcatgatgtgtacgtttggtgtctctttcatgtagcactagccaaacatgatatgttgaagaggctacacgcggacatggttaaataagtgctgtgcacggagcaagatatcatgttgtgacagattgatatgatttagccatgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0253100, RefSeq:Os03g0253100