Os03g0259300

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Revision as of 12:30, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0259300| Description = Tetratricopeptide-like helical domain containing protein| Version = NM_001056146.1 GI:115452020 GeneID:4332310| Leng...")
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Gene Name

Os03g0259300

Description

Tetratricopeptide-like helical domain containing protein

Version

NM_001056146.1 GI:115452020 GeneID:4332310

Length

7051 bp

Definition

Oryza sativa Japonica Group Os03g0259300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:8449480..8456530

Sequence Coding Region

8449484..8450098,8451211..8451702,8452495..8452710,8453807..8454130,8454884..8455126
,8455949..8456143

Expression

GEO Profiles:Os03g0259300

Genome Context

<gbrowseImage1> name=NC_008396:8449480..8456530 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:8449480..8456530 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcagaacaggcggcgatctcgtccggtggtacctactccgatggctcgcgtccgccaccgccatctcctcttgctcgtcgccgccgtcgccgccgccgcctccgcgctcctcccgtgcgcctccgcggtccgcccgttcgtgctcgtcctctcccgtgacgacttcctcaaggacaccgccggcgcgcatccctccctcccatcagccgacgccgactccgacgagtgggacgacttcgacgacgagtcccccgccaccgaccccctcctctccccgtcctcctgggtccccctcctcgaccccgccagcgcctccccttcgggcgacgagccggactcgccgtccgatgcgctcttcgtcgctggcgtgcgggcgatgctctccgcggcctcggcgggggatgacgcggcgttcgccaccgcagcggcgcagatcgaggccgcagctacgggggggcaccccggcgcgcagtccgctctcgcgttcctctccggcgcagggatgacgcgcccggcgtcccgctcgcgcgccttcctgcttcacaaattcgccgccgacgcaggagacctccagtctaagatggctctcgcctactccttcttccgccaggagatgtatgaagaagcagtcacactttatgctgaacttgcagaggctgcgcttacaagctccttgatctcgaaggagcctccagtgattgaaccagtcaggttacacagtgggaccgaagaaaacaaggaagccttgaggaagtctcgaggcgaggatgatgaagattttcaaatcacagagtaccaggcacaacgaggcaatactgttgcaatgcacaaattagggcttctgtattactatggcctacgaggagttagacgtgattatgggaaagcatatcattggttttcaaaggctgtggagaaaggcgatacacgggcaatggagcttctcggagagatctatgctagaggtgctggagttgaaaggaactacactgaagcatacaagtggttgacacttgcagcaaagcagcaacaatactcagcttacaatggactgggttatctctatgtcaaaggttatggggttgagaagaaaaacttgacaaaagcaaaggaattttttgaaattgcagctgagcataaggaacatgggggttattataaccttggcgtcttgtatctcaagggtattggagtaaagagggatgtgatgacagcatgcaatttctttcttcgagcagttaatgctgggcaaccaaaagctatttatcaagtggcaaagttgttccagaaaggtgttggtcttaagaggaatctccaaatggcggcagtgatgtacaaatctgttgctgagaggggcccctggagctcactttctagatgggctctggaatcttatttgaaaggtgacatagggaaagcattactcctgtattctagaatggcggatcttggatatgaggttgcacaaagcaatgctgcctggattcttgataggtatggcgatgaaagtatttgcatgggagaatctggcttctgtacagatatggaaagacatctccgtgcacatgctctgtggtggcaagcatccgagcagggtaacgaacatgctgccttgttaattggtgacgcctactactatggccggggtgttggcagggattacgagcgtgcagccgaggcatatatgcatgcgcaatcacaatctaatgctcaggccatgtttaaccttggttatatgcatgagcatggccatggacttccccttgacttgcacctggcaaaaagatattatgatcaggctgttgaggtggatccagcagctaagctccctgtcatgcttgcactaacaagtttatggataaggaagaactatgatggaagctttttggttcattttattgattcactgccggaggtatatcctgtagttgaggaatgggtggaggatgttcttatggatgaggggaacgcaacaatatttactctcttcgcttgccttgtaactgtcctatatttgcgagagcgtcagaggcgtcaagctgcggccgccaaccctcaacagcctgatggtgcacccatctaa</cdnaseq>

Protein Sequence

<aaseq>MQNRRRSRPVVPTPMARVRHRHLLLLVAAVAAAASALLPCASAV RPFVLVLSRDDFLKDTAGAHPSLPSADADSDEWDDFDDESPATDPLLSPSSWVPLLDP ASASPSGDEPDSPSDALFVAGVRAMLSAASAGDDAAFATAAAQIEAAATGGHPGAQSA LAFLSGAGMTRPASRSRAFLLHKFAADAGDLQSKMALAYSFFRQEMYEEAVTLYAELA EAALTSSLISKEPPVIEPVRLHSGTEENKEALRKSRGEDDEDFQITEYQAQRGNTVAM HKLGLLYYYGLRGVRRDYGKAYHWFSKAVEKGDTRAMELLGEIYARGAGVERNYTEAY KWLTLAAKQQQYSAYNGLGYLYVKGYGVEKKNLTKAKEFFEIAAEHKEHGGYYNLGVL YLKGIGVKRDVMTACNFFLRAVNAGQPKAIYQVAKLFQKGVGLKRNLQMAAVMYKSVA ERGPWSSLSRWALESYLKGDIGKALLLYSRMADLGYEVAQSNAAWILDRYGDESICMG ESGFCTDMERHLRAHALWWQASEQGNEHAALLIGDAYYYGRGVGRDYERAAEAYMHAQ SQSNAQAMFNLGYMHEHGHGLPLDLHLAKRYYDQAVEVDPAAKLPVMLALTSLWIRKN YDGSFLVHFIDSLPEVYPVVEEWVEDVLMDEGNATIFTLFACLVTVLYLRERQRRQAA AANPQQPDGAPI</aaseq>

Gene Sequence

<dnaseqindica>5..619#1732..2223#3016..3231#4328..4651#5405..5647#6470..6664#gtcgatgcagaacaggcggcgatctcgtccggtggtacctactccgatggctcgcgtccgccaccgccatctcctcttgctcgtcgccgccgtcgccgccgccgcctccgcgctcctcccgtgcgcctccgcggtccgcccgttcgtgctcgtcctctcccgtgacgacttcctcaaggacaccgccggcgcgcatccctccctcccatcagccgacgccgactccgacgagtgggacgacttcgacgacgagtcccccgccaccgaccccctcctctccccgtcctcctgggtccccctcctcgaccccgccagcgcctccccttcgggcgacgagccggactcgccgtccgatgcgctcttcgtcgctggcgtgcgggcgatgctctccgcggcctcggcgggggatgacgcggcgttcgccaccgcagcggcgcagatcgaggccgcagctacgggggggcaccccggcgcgcagtccgctctcgcgttcctctccggcgcagggatgacgcgcccggcgtcccgctcgcgcgccttcctgcttcacaaattcgccgccgacgcaggagacctccagtctaagatggctctcgcctactccttcttccgccaggaggtgagatgattcgatactttgctagttcctcctgcaatttgcgcgtctaatgaggattccgtgatgtagtaatttatgtgaggttattagctcgctttcattgggctggggagggattgtccttgaagccctattttagtattcatccacagtagaaatctctgaattttttgttccagtagggtttccccccggatttgggacatttttcccctagttgttggttaagcaaccaattccccattctttacccagtttatccagcacaattttacaatttttagttttaccagcgactttttagcatactgtgtatggacatgtgattgtgtttaactgaatgaatttctctatcatctctggaggatatacagtgtgcagggccaacagtgtttatttggtgctaatgcattcctttgaggttgtaacaacacgtgcccttttggcagtccaactaaaaaacttggaagttggagagtgtattataaacattttgattttcttcaacttttctaaacatgatgtcttatgcaattcaccttaccctccaatgccctgatccatgttacacttatgtatctgccaatcatttacattctggagcaaaaatagttttactgatccagtaagaattttcatttcacgtctttattcttgctataagaatcaagcatctgttttactgttctttatcttcttgagaaaagacagtggttttaattccatgaaacgaaggtccatgtgtagtccttttttactttctctttgaaaaaaatatggaattaatatctgttcatatagcttcttgttgagttttattatgtcttttgttcacttgcatcaaccaagcatgattggagcatcattgtaggttgaaaacatgcaagtttctcagttttgtttgaatttgtgtcctaaaacctcatggtttgattgaatttgacccgagtatgtgtattggtgctctattacatatatcatctttccatcgtttataccacgttaaatttcttgtactacagaaataaatggtttaaacctatttatttccttctgttcagattacagaggaaactatttctttttgttagctgaaaaatttgctcttgcagatgtatgaagaagcagtcacactttatgctgaacttgcagaggctgcgcttacaagctccttgatctcgaaggagcctccagtgattgaaccagtcaggttacacagtgggaccgaagaaaacaaggaagccttgaggaagtctcgaggcgaggatgatgaagattttcaaatcacagagtaccaggcacaacgaggcaatactgttgcaatgcacaaattagggcttctgtattactatggcctacgaggagttagacgtgattatgggaaagcatatcattggttttcaaaggctgtggagaaaggcgatacacgggcaatggagcttctcggagagatctatgctagaggtgctggagttgaaaggaactacactgaagcatacaagtggttgacacttgcagcaaagcagcaacaatactcagcttacaatggactgggttatctctatgtcaaaggttatggggttgagaagaaaaacttgacaaaagtaagtatcatgtattagagttttgaaatttagttgcatgtttgtattgggcttacagcctagaaaatagaatcttgaattgcattccattgttagacgatagaatcttgaattgcatttcattgttacaactcactatatccactgctatcgttgtttctagtcagggaaatctgtaggccactagccagctagattcttctttaggtcattttggtaaaatattactgttagacatacattatgatatagaggaataaaaatatgtaacatgacattcttcacccacaagttcgtatgacctatggcaatctgtacctatatttcacaattgatcttattctcatggggaactgaagtagcctattatctatgcattttcattattccattccatatactgtagccattaacaataactcgatacgtgtagttactgttttacagagactaaatacgtggtagtagcacatcaatttcaaatggatatgagatgtgcatcttttctaacagagctacttttagctggacgaagtattaagagatgatggttcaatagcacatctgatcgcagttggagaaatatttagtatcaaatgtttcctgttctacactaatttgtaattagacttatgtaaatttcaatacattaatataatctcatgaagtcatgatgactttatacaacagaagtttcaaaatagatttcatttttttaccattttgaaaaacctgtgttccgcaccttgtaatggtttaggcaacttaatgtttttctaactcattttgtaggcaaaggaattttttgaaattgcagctgagcataaggaacatgggggttattataaccttggcgtcttgtatctcaagggtattggagtaaagagggatgtgatgacagcatgcaatttctttcttcgagcagttaatgctgggcaaccaaaagctatttatcaagtggcaaagttgttccagaaaggtgttggtcttaagaggaatctccaaatggtaatgattcttttatgctgtattagctgcattttgaaataaatgcacaaactggataacacatgcgatattacttgccataaactataaactagccctgcacaatcgcgtaggaaattcagcttgtttgaatgaaagaatgaaattttagaaatcaagttaaaaccgtaatttgaaatcaaaagctaatatggatactttgtgtataaaaatgacttcaaaatataaagacatattcatatttaattcttcactattcatcctctgatgaagatgacaaacaaaaacttctggtattcaacacagcttgccattggaggaactattggtgtgctcctctcacgccttggagaacaaatttgaaacaggatgtgactgaaagttatgccatgaataattcctaagaaacttgaattgcatttttttttatttttccaaagtgctgatgcattcttgctggtctatgctgaagctgcaaactatcattagatggctatgctgtcacagatattgtgcagtagctgcattccttgtctgatagacccttctaagaggctctacagtgtgctactcgatatagtgtccatgctaggaaatattatacatctgcatgtatgcaccaattgcaaacaccaaacatgcagacgtggctgcctgtgtccttccgcataaacacaatttcccctccttttttttcatttatatatctgttgaaattattgaaagaagaccaaaagcttccatcaaatccatgtacttcttacctgtctgtcttttgaattgagccaataacttgcctatgcacttacgattaatcaaataactttacttatattcaaatttagagttcacttgctcttttgcataatatggtcttacataaagataattctgaactatgccttcggttataagacttgaaggaaacaccctctgttttacaatatcaatcttttccttactcttttagaggtatatatcagaaaggttgaactgcaaaatagtttttctaataatagttttttatgatacaaatagggaatcaatgtaattttgtcaaccaacagaatcatttgtaccatatttattctttcaggcggcagtgatgtacaaatctgttgctgagaggggcccctggagctcactttctagatgggctctggaatcttatttgaaaggtgacatagggaaagcattactcctgtattctagaatggcggatcttggatatgaggttgcacaaagcaatgctgcctggattcttgataggtatggcgatgaaagtatttgcatgggagaatctggcttctgtacagatatggaaagacatctccgtgcacatgctctgtggtggcaagcatccgagcagggtaacgaacatgctgccttgttaattggtgacgcctactactatggccgggtatgtgttacaatccatgttcttggttatgagaaattctgaaatgctcttgaatttgttagaggacagaggacttttcctaaataccttcatcaaattgacacaaacactataatatgtaagaatttcttgtataagatgcatgaggtgcagttctttcttttggttatcctgttagtattaccattacaaattactaagtaaatatatgatttgaaaacatgtttactatatacataagtgcatgctaataaatttcataaagtatatattcatatgttatgtgccgtaactactgcttgatgacaatcaacataaccatgtttttaccttgagttatgtattagtatgatttttttttcttttgagatgaaccatgtttccaagggagaatatttaaataactaatgaaaggttacctctaattttagcttttccgagtttttggtcatcaccatctaatcaccttagtttaatagcctagttcgcattccagtttctttccgtgttcctctttttggtacttggccaggcgaattggcttgtcagcaaattgggaagtgatcttgttcttttttaccggtttacttgttgtatgcaaaacttttccataattattacaaaaaaacagtctgttattattataattttgaaaaattgcttatgcacttcttatatactgggggcctctgcgttcttaaagagaccattattgctgacattgtgtattggatgtgtacttttgtattacagggtgttggcagggattacgagcgtgcagccgaggcatatatgcatgcgcaatcacaatctaatgctcaggccatgtttaaccttggttatatgcatgagcatggccatggacttccccttgacttgcacctggcaaaaagatattatgatcaggctgttgaggtggatccagcagctaagctccctgtcatgcttgcactaacaagtttatggataaggaagaactatgatggaagctttttggtaagacattattttctgtatgtgtcacaccgttgcttagtatcatacaagacatatcaacttataaaacacttgtgtagtttactgggtatatttcaagtttagcgctgtttggtaattactgtttctttttaaccatgttttattttgagaaccatttctcgagtcaaatcccactgagtcactgctagttttttttccttacctccagacagtggtatcatctctccacccaatttccaatggtagctcaagctgatgtacaataccctaacctcttcaaaactgattatgaaacttaaacctgatatacgataccctagcatccatgcattctgagttgtgaaatatatcatgttacaataaaagaaaggacacttaagaaaactgttgtggatcagcctgggatggtgctgaccagtctaatttcttgaacgctgattcaaaacgacctgggattcagtttgattttgctaagctcttcctcttttgccacctctgcttctcagtctaattgtaaatgaatttaattactttaaaggtatggaattttttaaggctataagtatggttctggatttgtagaaatctgattcattgtttgaacagtgtgataccagttcatgttgtgcatattgaatttgaaaggctgtgtagtctcagtcacgtaatgattagtgctaacagtttttgctatgcatgctatatttcatatttccataatgttctgcttgtcacatttggtattgccatcttgctgtataatcaacatcactgttttactagtttgccatgggcaactaaatccttatttactttcaggttcattttattgattcactgccggaggtatatcctgtagttgaggaatgggtggaggatgttcttatggatgaggggaacgcaacaatatttactctcttcgcttgccttgtaactgtcctatatttgcgagagcgtcagaggcgtcaagctgcggccgccaaccctcaacagcctgatggtgcacccatctaatttcaacctttgcatcatgatgctgggattgaagtggacgttaagcttgaggtacatagtcatttattctcagccatatcataccatcaaagttttgtttgatgtctgaagtgttaatggaatgacaacgtccatactgtcatactggaaaagcgggtccttcaactgcaaaatgctgatggctttctgaggttaaaaatcggggtttaaaatgatagctctccttgacatctatgtacactaaaattgactaggataagaactgatcatgactgttggatattgagatcatgttgtgggttctaacagagtagtgcttgtaagtaacgacggttgttcaagaaaacgtatactccctccgtcccataatataagggattttatttt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0259300, RefSeq:Os03g0259300