Os03g0271400

From RiceWiki
Revision as of 12:31, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0271400| Description = Armadillo-like helical domain containing protein| Version = NM_001056226.1 GI:115452180 GeneID:4332391| Length = 333...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0271400

Description

Armadillo-like helical domain containing protein

Version

NM_001056226.1 GI:115452180 GeneID:4332391

Length

3337 bp

Definition

Oryza sativa Japonica Group Os03g0271400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:9126710..9130046

Sequence Coding Region

9127007..9127553,9127682..9127784,9127876..9128097,9128907..9128957,9129523..9129668
,9129833..9129918

Expression

GEO Profiles:Os03g0271400

Genome Context

<gbrowseImage1> name=NC_008396:9126710..9130046 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:9126710..9130046 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccggagatcggctgagctggtcggggctgctgaaatggagcctctcctacgccgacgggacgcggccgtctcgcgccatcagcgaggaggagcggaggtggttggcggaggcggtggagcgtcacatgatggtggacgtggtgagccgcatgagggagatcgcgctgctcatgagcaccccgctctccgtcctggaggcgcacggcatcacccccgacgacatcgaaggtttactggctgagttgcaggtacatgtcgagtctattgacatggcaaacgatcttcattctgttggtggcttggttccggttatcaagtacctcagaaattctaatgctcgtatccgagccagagcagctgatgtggtaactacagttgttcaaaacaatccaactagtcagcagctggtcatggaagccagtggctttgatccccttttatctaattttacgtcagatcctgatctcactgcccgcataaaagctcttggtgcactatcctccttgattcggaacaacaaaccaggtgtttctgcttttcgtctagccaatggatatgcaggactaagagatgcattgacttcagaaagtgcaaggtttcagaggaaagcactgaacctcacgaattatctgcttagtgaaagccattccggttgctcggtgtttgcacagctaggtttcccgcggcttatgatgcatttggtgtccagtgatgacttgggtgttcgagaagctgcattaggaggactgcttgagcttgcaagggacacgacactgggaagtaggagtctactagcagatcatgacaggcttcgacggcttctccaggcacgtatagagagaataaggatgatggctccagaagaccttgatgctgcacgcgaggagaggcaactcgtagattcactgtggattacgtgctaccatgaaccgtccacacttcatgtggaaggtcttcttgttttgcctggggaggaatgtttcgaacaacctcctgacgtggctggtagattcttcgagcctctgcggcgaagttcggcaaggagagcaccttctaatgagagatcagatccaggagatggaactgggggaggaatgatgctgcttttaggtccatccccaggcagtagatcaaactcggggagtaattga</cdnaseq>

Protein Sequence

<aaseq>MAGDRLSWSGLLKWSLSYADGTRPSRAISEEERRWLAEAVERHM MVDVVSRMREIALLMSTPLSVLEAHGITPDDIEGLLAELQVHVESIDMANDLHSVGGL VPVIKYLRNSNARIRARAADVVTTVVQNNPTSQQLVMEASGFDPLLSNFTSDPDLTAR IKALGALSSLIRNNKPGVSAFRLANGYAGLRDALTSESARFQRKALNLTNYLLSESHS GCSVFAQLGFPRLMMHLVSSDDLGVREAALGGLLELARDTTLGSRSLLADHDRLRRLL QARIERIRMMAPEDLDAAREERQLVDSLWITCYHEPSTLHVEGLLVLPGEECFEQPPD VAGRFFEPLRRSSARRAPSNERSDPGDGTGGGMMLLLGPSPGSRSNSGSN</aaseq>

Gene Sequence

<dnaseqindica>2494..3040#2263..2365#1950..2171#1090..1140#379..524#129..214#gagagaaaaatatctcgcgcttcacacgcaacgcaagaactcgacgaggcgagcgagcgatcgagcggacaccggcggcatcgtgggaacgggaaggcgtgggggagggaggagggcgacggtaggggatggccggagatcggctgagctggtcggggctgctgaaatggagcctctcctacgccgacgggacgcggccgtctcgcgccatcaggtgaggaggatttggcttgcggagggttgattgctgttggggaaattggaatgtggcgggttctttttttccgtttcttttcttttctttcttcttgtttgcttgagttgtgtggctgatggtggagagttggttgggggtgtgtgggtggtggtgcgcggcagcgaggaggagcggaggtggttggcggaggcggtggagcgtcacatgatggtggacgtggtgagccgcatgagggagatcgcgctgctcatgagcaccccgctctccgtcctggaggcgcacggcatcacccccgacgacatcgaaggtatgtttcggttgggttgtcagtacagaccagcggttgtggttgatttgaaggattaagcatgaatttgagcgatcaatttgcgattcggatgatgaactaggaatgatggatattcgggaactaggaatatggattcttgactctcttttcttttcggttggcgatttggatgatgaactagggatgatggattttcgggaactaggaatatggattcttgactctctttttttaggtcggccgcggagaagggttcttgtctactgaattctttgtaaaattcgtgctatggtgttaccaacttggaagtgccgggcgtaacatatggtactcgggaaatgttctcagcaaattgaaaattttatatcatctaaaagttacttacggttttcgcaatccgtgcctacttttgagattggcaaggattcgtttttccgttgttctgaaatttcccgggaaggcgttattagagtgcgtctgcatgattgcatctctttgcaagttcatgatattccctctgttcttctgctgaaactgactggagtggatttgaatattgcaggtttactggctgagttgcaggtacatgtcgagtctattgacatggcaaacggtacgtctagccgtggtcctctagactctagagcatcaccattttgttccatgctttactactgttgttcatcatgcttcatctgtgttgtatgttcatcattcgaaagctatgatgcataatcacatatctaccattctatattagcataaccacaaaagaactgaggagccttcacattcacacaattcaagctagggtctggtccttgaacaccattttacaaaatgtacatcccaaacagcactagccgtccaatatatgtgcgcctttgttagaactctccaccaccatgagtttgtactctttgcataatctatgtttcttactattgtattgctgagttgctatatatgtgatctcaaatccattccttaagttaaatctacaattccatctgtaggaaacaaatgtagcacttggaggcatacattactggtgtcaaaatgagtactttcataacattggatgattcaaaggcatttgtagttactgttgaggtggctaaacaaatgggcggaggcaaccatagtgttttttgcaataaaacattgtttttcaggtgaattctcagcttccccttccaatacagcactaatacaacttccaaggggagctgacagatagttgtcggattcctagactcacttcacaaaccaattcaataagacaaaaaaaaagtttgaaatctggaaacaaggagcatgtgacagttaacaaccaaatgttaacatattgtcggtgtgaattgtttcatatgtttgtaactttgtatgcatcatctgttgacctattttgtttttctttagatcttcattctgttggtggcttggttccggttatcaagtacctcagaaattctaatgctcgtatccgagccagagcagctgatgtggtaactacagttgttcaaaacaatccaactagtcagcagctggtcatggaagccagtggctttgatccccttttatctaattttacgtcagatcctgatctcactgcccgcataaaagctcttggtgcactatcctgtaagtatgttgtctatctttttcagatggtgacaataataataataccttgatgttcccctcattgacattgttcccatttcatgttcagccttgattcggaacaacaaaccaggtgtttctgcttttcgtctagccaatggatatgcaggactaagagatgcattgacttcagaaagtgcaaggtttcagaggtactttagtatagttgatctgacctgagccatcttatttagtatttggcaacattgacttcagataagtgaggagtatttggcaatgcttatgtgcttttgactgacacgcatgctgtctcttccaggaaagcactgaacctcacgaattatctgcttagtgaaagccattccggttgctcggtgtttgcacagctaggtttcccgcggcttatgatgcatttggtgtccagtgatgacttgggtgttcgagaagctgcattaggaggactgcttgagcttgcaagggacacgacactgggaagtaggagtctactagcagatcatgacaggcttcgacggcttctccaggcacgtatagagagaataaggatgatggctccagaagaccttgatgctgcacgcgaggagaggcaactcgtagattcactgtggattacgtgctaccatgaaccgtccacacttcatgtggaaggtcttcttgttttgcctggggaggaatgtttcgaacaacctcctgacgtggctggtagattcttcgagcctctgcggcgaagttcggcaaggagagcaccttctaatgagagatcagatccaggagatggaactgggggaggaatgatgctgcttttaggtccatccccaggcagtagatcaaactcggggagtaattgatcactctgggatgtgaattacatggaaaaggagactgggagtctgctgtcctcttatgtacattgtgcagggctagtgctatagagtgttgctgttaaggggctagtaaaaagtaaataaataatttcccagtttcgaagaaatgtaagtggaaaatatgtgtgatgttcagcagtgtataatatgtctgatgtttagcagtgtgtagtctcattatacaatagaaatgcgaaatacttttgtgtaagagacctaaacgatggtggggtgatagtatgaaatgtaaatgtagcgccc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0271400, RefSeq:Os03g0271400