Os03g0275400

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Revision as of 12:32, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0275400| Description = Zinc finger, DHHC-type domain containing protein| Version = NM_001056242.1 GI:115452212 GeneID:4332408| Length = 472...")
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Gene Name

Os03g0275400

Description

Zinc finger, DHHC-type domain containing protein

Version

NM_001056242.1 GI:115452212 GeneID:4332408

Length

4729 bp

Definition

Oryza sativa Japonica Group Os03g0275400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:9358173..9362901

Sequence Coding Region

9358435..9358606,9358697..9358831,9359279..9359345,9359505..9359601,9359713..9359809
,9359894..9359977,9360197..9360237,9360871..9360936,9362196..9362336

Expression

GEO Profiles:Os03g0275400

Genome Context

<gbrowseImage1> name=NC_008396:9358173..9362901 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:9358173..9362901 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcaggctggcgtcggcgtcggggctccaccggctgcggcggtcgccatgggaggtgctgtggtcggggctggcctcctgcggcctcacgctcctctcgcagctcgccgtggccatggtgccccgcctcttcccttccctctccctcctcgccatgctccccgtcgcaggcgtggtgttcctggccgtcatcgtggtgggcaggttctggaggaggttcatcggagtggcggcatcggcgccgctgttcgtactgttcaacatcctcttcttgtggggcgtctacgtgtttgtcatccggggaggcacttcttccctgttagatatggtaattaatgctgaatgtgcaatgcttttgtttggactttacaggatattttctggtgatcctggcattgtgatctatgaatcttcatttttcgaagaagctggctgtaaggattttgtggaagctatatgcccgagtgagaaattttcatcacttccaagggtaaggcactgtaactgctgcaaagcaaatgttagaggttatgatcaccattgtcctgcatttggtaactgcataggacagaaaaatcatcggctgtttatggcccttttgacaggctttgttgtcgctgaatcgacatatacaatgtgttcaactaaatatatcactagatgcataaattctggaactataagatcggagaatcctatgtctgttaacatggtaatcggcacaatgctcttctctgttctccaagtgctctggcaggctgtgttcttgatatggcacatatattgcatctgcttcaacatcaagacagatgagtgggtaatgtcaaacttcccatgctttggactcttccttcatcaattgcaggccatcttctcgtttgctgtttcttatagctaa</cdnaseq>

Protein Sequence

<aaseq>MSRLASASGLHRLRRSPWEVLWSGLASCGLTLLSQLAVAMVPRL FPSLSLLAMLPVAGVVFLAVIVVGRFWRRFIGVAASAPLFVLFNILFLWGVYVFVIRG GTSSLLDMVINAECAMLLFGLYRIFSGDPGIVIYESSFFEEAGCKDFVEAICPSEKFS SLPRVRHCNCCKANVRGYDHHCPAFGNCIGQKNHRLFMALLTGFVVAESTYTMCSTKY ITRCINSGTIRSENPMSVNMVIGTMLFSVLQVLWQAVFLIWHIYCICFNIKTDEWVMS NFPCFGLFLHQLQAIFSFAVSYS</aaseq>

Gene Sequence

<dnaseqindica>263..434#525..659#1107..1173#1333..1429#1541..1637#1722..1805#2025..2065#2699..2764#4024..4164#acacgcataacaccattctactttggccactgctgcatgttcgacgaaatgcccacgcgagtacgccactaagattcgccccgcatctacgtcgattccccggttccccctcgcttcccgtcgaggaatccggcgagatcgaggcgccccgcgctaatccggcgatcctcgccgtcccgccccggctggatctccgtgctgggtggggggcggccgcggccttgatggtacttcggatccggaggacgaggaggcggcggcgatgagcaggctggcgtcggcgtcggggctccaccggctgcggcggtcgccatgggaggtgctgtggtcggggctggcctcctgcggcctcacgctcctctcgcagctcgccgtggccatggtgccccgcctcttcccttccctctccctcctcgccatgctccccgtcgcaggttcgtgcccgcttgcttccttttgctcccccacccccacgcgtctgattatgtgcgaattttgatgtggtttggttgcgtggtgcgcaggcgtggtgttcctggccgtcatcgtggtgggcaggttctggaggaggttcatcggagtggcggcatcggcgccgctgttcgtactgttcaacatcctcttcttgtggggcgtctacgtgtttgtcatccggggaggtgaggttatggagcattgcatcagttggactccgtaggatgggcagcattcgcgatctctagtgttagaacttgcatagtagtttgccgttgtgatatggcattgttctgagtagaaggaaagcattattgacaatgcaatgcactggataatgtctattggtatacgcatatggcatttttgtggtgtcgcgtcgatttgggtgaagttaatcacctttcctggtgagttgcactgcacagcttagctaaatacatgtcacttcagtacgatttagggctcaatgcagtgttcataggttgccataaatgggtctaggtatgtagcttgttaacctttgatatttggaaatttattgcatttatgatgtcacctggtagtagtatataggtgatgagtgtatctagtttctgtaatgtttctataattggttgtttgctttgcaggcacttcttccctgttagatatggtaattaatgctgaatgtgcaatgcttttgtttggactttacaggttagctcttctgaatgttctttcacaatgcacttagctaagtctaagatacattagtccatttacattattgctgtgcaattcataagcttaagtttactgatattagcgaattattaccttgaggatggagggtttagttctgtttcccgactgcaggatattttctggtgatcctggcattgtgatctatgaatcttcatttttcgaagaagctggctgtaaggattttgtggaagctatatgcccgagtgaggtgctgaggaattagatatttaaatggttctcttatttttagttactaataatacgagacgttgagttgttgcattaacatgttgacatgtattcctcttttttgctatagaaattttcatcacttccaagggtaaggcactgtaactgctgcaaagcaaatgttagaggttatgatcaccattgtcctgcatttggtaactgcataggtataatgtcccattcttttgtgtggagttttctttatcatatgttataagcacatattctgaattgcagtgtgtattctgcaggacagaaaaatcatcggctgtttatggcccttttgacaggctttgttgtcgctgaatcgacatatacaatgtgttcaactaaatgtatgtatcttaacctccttgctctgtaaaaatgagttatcagttttcttgagttagcaatctgcattgctttaataaccataacaatattctatcgttcaactaacgatagcgaacgtgtaacagttatttatggatttttcacatgtcatttagcaaaatagcatttcagagccatggatttctacattaaagcttctttttcactctgctttacagatatcactagatgcataaattctggaactataagatcggaggtatcatctggcatcatcttactttgcatatgctgcatacatggcttgccaagtgatataaaaactacattatcaaggcaactatgtaattgtggtttttgcacatgctattgaactcatctcgacaaataattgttcttttaggtgctatgtctttaggagtgtccactgagtacctttgaatagttctataccatgagctgaacaaaaagatattttacttctaaccttgtactaccattgcactatttttgaggcagtttgtagtgtggataggagatggcatcgaacttgcaagcctcattgtcaaactttaggatagtaaattttagcatctttatggtatttaggcacaacaggtgcatttgtgttaagtggtattttctttttgtacggtagattcatagtagccaggcatttttttttcctcacgattttagatgcattagaattaacatgagtgaccatccatgtgtaaatcctttaggctgtgtgatctattcatgatcttatcattcattaaaaaaacacagagtccctctttgatttgtccataaaataacatcaaaatttctgatcaaatgttaatgtgttataatgactgatactgagggtactttgtttacttcacagaatcctatgtctgttaacatggtaatcggcacaatgctcttctctgttctccaagtgctctggcaggtttgtcctaatcactaacaactgatgatggattttactgctaagagattacctctgcacaattgcacatgcagaagggaaagatattgttttgagaaaaaaaaaatcccatgctccagaactgttggcttggaattaattgctaacgaggtaaatctaccagaatacagtagatgtcttgtttcacaggatattctgaaaagatgtaaaactgaactcatgataatgaaggaatggtgtgtttaaataatgctcaatgccatcggatcgcagctggtgatgataaactatccaatcagtagtcgaccagtattcgctgggatagatccaagatatataactgtttagaagataaaatgtgtacataaggaaaaatgtcaagttgcatacaaaacaaattgttcctacaatcccactgaaactaacgtcacaaaataataaaatgaagacaaagcgcaaggtacctggggatttggaacaaagttacatcagtatatcattgttgtcaacttgtgaaaaacaaagttgaagaaatgcaaccaagcaaccattcaaatatttatttatttattttatttttttgagaaagaccatacggcccagcctatatcgaaggccaaaacggcaacatatctgggggttgcccagtttacaagagtgcaaataacaggaaacctggctaaagttgcccaaacagaccaacatcaacacctcaaaaggactgaccaacatagagagagaagctaaggaccagaaactctaaacacacaacctgaagcagactaaattgctaaccattcgaatattgatctagtctattttgttagtctgttcttaacaaagttcaatccaaaagtgctcacacttgtggttactatgggaagtatcaacaccaacttgagaaccccacatgtttatgtcgatgtttcttattaacttcaacaaatattgtagacatcccacatggttcttcattgcccatattttaataaacgattgtgggctgattggtgaccgttgaacataagtacatcaccactatatcctggttattttcatgttttacagggcgccaatctgggttggtattccatgtgctagtttggtctgtcattcctttgactaatttgctaagatagagtattcatggatatcatcgaagactggctgcatttgtatttataatggacgttctaactaaactttttactacctattttctaatcatgccacaactaatttggttgcttccttgctaggctgtgttcttgatatggcacatatattgcatctgcttcaacatcaagacagatgagtgggtaatgtcaaacttcccatgctttggactcttccttcatcaattgcaggccatcttctcgtttgctgtttcttatagctaagaggtgagattttccagataaactggaagaaataccctgaattccagatgaaggaacagcctcaatcaggtgccttttcatgtacatcctgtggtttagtgcacatttcctccagtggtatattgacctgattcgcctccgtgcagattctggagtaaagtttgtgaatccatatgacaaaggcgtgctctgtaacattatagaatttctgaagccgaaataacacgagctgatcctaagtacagacgttaaaaacatgggaaatcattgcatcaagtgatctggaattctgaaagattgttttgcttcttacagccaaattgatgggaatttgttgtgagcatcatttggccactagtagctagttagatcaacacgcaattgacactctctgaaaacttccttgttgagcgggaactgtattgcaatggatgctgcatcggacgtgatttgggcgttccacccaagtacatacatcttgtaactctagaaaatgattcattgtgtggattgaaggaatacacatcgtattcctgcaagcaatattttgatgctttgaggtgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0275400, RefSeq:Os03g0275400