Os03g0286200

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Revision as of 12:33, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0286200| Description = Similar to Prephenate dehydratase-like| Version = NM_001056307.1 GI:115452342 GeneID:4332477| Length = 4752 bp| Def...")
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Gene Name

Os03g0286200

Description

Similar to Prephenate dehydratase-like

Version

NM_001056307.1 GI:115452342 GeneID:4332477

Length

4752 bp

Definition

Oryza sativa Japonica Group Os03g0286200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:9914507..9919258

Sequence Coding Region

9914640..9914925,9915052..9915113,9915252..9915344,9916246..9916446,9916529..9916612
,9916755..9916850,9916925..9917002,9917105..9917194,9917290..9917357
,9917497..9917578,9917647..9917706

Expression

GEO Profiles:Os03g0286200

Genome Context

<gbrowseImage1> name=NC_008396:9914507..9919258 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:9914507..9919258 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggattccacggcctgcctccgcctcccgttcctccccgcccggacccgcccctcctcctcctcctcgtcgtctccccgacgcgccgctcgcgcgtcctccatcaaatgctgcaccgccgcctccgacgccggtgccagttcggcctccatctcttccgcgtcgccgcggcggccggacgtggtgaacggcgtggggcccgccggcgtagacggcctcgcgggtccgcccgtgcccgtaccggactcccccgcccccgcctcccgtgatctccactggctgcctcgccctctcaccagcgccgacctgatgggcgtcagcggggaggggctcaaggttgcctaccagggttgccctggagcgtacagcgaggcggcagcgaagaaggcgtacccaaattgccagactgtgccctgtgagcacttcgatactgcattcaaggctgttgaaaactggttagctgacagggcagtattgccacttgagaattcattgggtggtagcatacataggaactttgaccttttacttcgtcatagattgcacattgttggagaggtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaagattgaaaacttgaaaagtgcaatgagccatccccaggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagctgttgatgatactgctggtgcagcaaagactgtagcagaacaaaatctccaagataccggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaatattcaggatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctcgcaccgataaaccattcaagactagcatagtcttttcacttgaagaaggacctgggcaactctttaaggcacttggggtgtttgcactgagggaaatcaacctaaccaagatagaaagccgcccacacaagaaaaggcctcttcgtataactgacgacagcttttccacaccgtcaaagcagtttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaatgctcttggaaatttgaaggagtttgcaacctttttaagagtccttggaagctatcctacagatgtaaatgaagcttaa</cdnaseq>

Protein Sequence

<aaseq>MDSTACLRLPFLPARTRPSSSSSSSPRRAARASSIKCCTAASDA GASSASISSASPRRPDVVNGVGPAGVDGLAGPPVPVPDSPAPASRDLHWLPRPLTSAD LMGVSGEGLKVAYQGCPGAYSEAAAKKAYPNCQTVPCEHFDTAFKAVENWLADRAVLP LENSLGGSIHRNFDLLLRHRLHIVGEVRLAVRHCLLANPGVKIENLKSAMSHPQALAQ CEHTLTEFGIEHREAVDDTAGAAKTVAEQNLQDTGAIASSLAAELYGLNVLAENIQDD KDNVTRFMMLAREPIIPRTDKPFKTSIVFSLEEGPGQLFKALGVFALREINLTKIESR PHKKRPLRITDDSFSTPSKQFDYLFYMDLEASMADPKTQNALGNLKEFATFLRVLGSY PTDVNEA</aaseq>

Gene Sequence

<dnaseqindica>134..419#546..607#746..838#1740..1940#2023..2106#2249..2344#2419..2496#2599..2688#2784..2851#2991..3072#3141..3200#aaagaaaagaaaaaaaaatctttgcccggcgcggtcgcggcgccacacgcgtgacacacacccgcaccgcacgccgagagccgacaccgccgcgccgccgctccccttccccaccgcgccgcgcgcggcggcgatggattccacggcctgcctccgcctcccgttcctccccgcccggacccgcccctcctcctcctcctcgtcgtctccccgacgcgccgctcgcgcgtcctccatcaaatgctgcaccgccgcctccgacgccggtgccagttcggcctccatctcttccgcgtcgccgcggcggccggacgtggtgaacggcgtggggcccgccggcgtagacggcctcgcgggtccgcccgtgcccgtaccggactcccccgcccccgcctcccgtgatctccactggctgcctcgtaagtgacgacgcggcggcggcggcgccggcggcgtcttccgtttgtcgaagtcgatttcgggggggttgggtttgagggttctgctatcatctcgttctgatttgtgttgtgttgtgtggtcaggccctctcaccagcgccgacctgatgggcgtcagcggggaggggctcaaggttgcctaccaggtgctcgacgaaacgcgcgtgttttatgcagtcccgtttcgtatcagtctccgtgcggccgtggctggttgtgcgtgggtgactgtgtttctgtctgttcatctaaacgttgttctgttctgatgatgaatatctcagggttgccctggagcgtacagcgaggcggcagcgaagaaggcgtacccaaattgccagactgtgccctgtgagcacttcgatactgcattcaaggtattgcagtggaaaacattgcaccttgtgtgctgtttatgtatgctgtagatgcagcattgaagatgatacacgtacaaaaaaatgtctacaaacatattagaaaacggatgtgcacattgtgattatatcttgatttttcataactaaccactaattatatccatcggttgaaatctttgttagttagagtttagtaaagattctttagtatgtataacactactatgcttatttatcacattgttatgcaaaggaacaatcctttgtttgtccttaaaagttttttagacagtgttcagtgctacttggcatgtcaagttctggaaataggcatgtaagggtccttacataatgaccagatattaataagttgttgtgtaacaaaatattattttctaaaaatagtatttggtggacacttggacaggcatgtatcaaagactgagtaatgttatgaacattatgtgttcttgtttcccttttaccttatgtacattgaagtttgtgaattatgtactccataaatgttacttgtgtggagtatttgatttaattagctgattttcccagccaagtttgacattttattttagttctgttttgcaaacaaaccaaagaagtccatatttgaggtgcttgatttcatattctattagcacaaattgatcttgagatctctgtccctatgttagacagaggatttgagagatcacctattcgttctaagcttttaaacttttggatccaccaaatgaagggcttgttttaactttttatgagaatttctatcatatttattatacttttatctatcaactgtaaatcacctgcagtcaaattttattgtacacaagcaaatagacataatgtgcgttgatgccccttattgcttttacaggctgttgaaaactggttagctgacagggcagtattgccacttgagaattcattgggtggtagcatacataggaactttgaccttttacttcgtcatagattgcacattgttggagaggtccgtcttgctgttcgtcattgcctgttagccaatcccggtgtcaagattgaaaacttgaaaagtgcaatgagccatccccaggtcaaactcttgcacaagatggcctaaatattctttattttttggtgtactaaacatgcagacatattattttaattctcaggctcttgcacaatgtgagcacacattgacagagttcggaattgaacatagagaagctgttgatgatactgctggtgcagcaaaggtacagtggttctccattctacccctatgctttgatttgtctagctcaatcattttgagttttattcttttgtggataggatttaaaggatccgtttagtgcattccctagcattaatcatgacatgatccttctttcctagactgtagcagaacaaaatctccaagataccggtgcgattgccagttcactggcagctgaactttatggactgaatgttcttgctgaaaatattcaggtattgtgatttcatcctaatctggaagaaattgttccactgttttcttaacattagcttgtttattcccctaggatgacaaagataatgttacccgttttatgatgctggctcgagaaccaattatacctcgcaccgataaaccattcaaggtacatattacagtgaaaactcttttccatactcctagttgtccattccctcacaaaaggggaagttagcctgcttgatttctatggtcatttgattttcagactagcatagtcttttcacttgaagaaggacctgggcaactctttaaggcacttggggtgtttgcactgagggaaatcaacctaaccaaggtatgtcagatagcctttctttgtaacttgcatgcagcatgcgttctgtagagataatttactgtcagtgtgttttccttgatgaatggctgcagatagaaagccgcccacacaagaaaaggcctcttcgtataactgacgacagcttttccacaccgtcaaagttagataacaacccaatgattgctatacttgtcgttttggtttccttaagttttttttttccagacctaagaaaaaaactgagaactgctttgtgttgtttatatcttcttaacccttttgatcctggtttgaaccaggcagtttgactacctcttctatatggaccttgaggcatcaatggctgatccaaaaactcagaatgctcttggaaatttgaaggtgcaatttcttcattcgcatgaccttgtgtcaagcaaacagtgtgactcatcttgttttatttacaggagtttgcaacctttttaagagtccttggaagctatcctacagatgtaaatgaagcttaaatagcaagcaccttctgcatatcacatgctagtaagtaatgactatgcatatctgccttttgctatctactccgtattgtttgctgtagaaaataccaacccttttaattcgagtgtaaaaggcactccttcagtcccaaaatacaacaacttctagctttcaaaatttgtcccagaatatagaaacttctccacctatattctcctctcaaccaatcacaaccttcccacatttaattccacctactttatgaaaacccatgtccaaccctaaaactccttatattctaggaccgaggtagtaggaaacatgcaacactttggacctatttggatggggtttgtttaggacaagttgctggtaaaatgcaccagcagattgtccccatgggcttgcttactttggtctgagtagagctagattatttgaactcctaggcagaggctaactaagggaatctaagattctaaggtaagtcagatgtggttatcattaatcttcttattttgcatgtcatgaagaaaagaaaaacgtgtcatagattaaacgagaggaactggaattctcaaatttgagtcgagtttaaagttttattaccaaataagtgttatgaccagtgtgttaatgtctgtaatcttggacgatgttgtccatttgctaagtttggcttttggaggtggtatccaacaaattcaggagtgtttgggtattctgaatatgcgagaaatggtactactagatgtcatgaactcatgatggttggatgaccattaaaaaaaagatgaaacaacttacctaatattttttagtggcaacttgtgggcattcaaagatgtgatgtcacacatctaattttccattataaatacaattcttatttttaaatctatgtatacaaaataatcgtatctatggaaacaggagctaagatttgagtatcaaatccaattcgacttttagagtctaactccgtggaaaattcgctagtcataattcataaataagctgacattgtttgttgagggaactgatttgatttgtctgtaatgcaggattaccagggatggattgagcgtgggctgtcaatttcacagcgagttgggaagtcatcaataatttctagactgatgctaatttgaagagcaataaagcatatccatgtattatcggcaaggaagctgcatgtgacttggttagaagatggaaaagaacaaaatagtgggttttacgttttactaagagctttatagtgatatacttaccaccatccatgccctatagtccttatgttgtaacttatgttcttctaagcaatcatgttcaacagaggtagagctcaaagggttgaatgtttggtaggtgccggtggttataggtagtggtgtagaacaatttcgctcgttcccaggggatgcgctggtcaaacccttcagtcggcttgccacccaactgttgtattttcttgtcctgtatgtgctcatggactcttagtcgtgagctcgtagcagatagttcaatcatgtttccctcgtgccaacatggcacagtacc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0286200, RefSeq:Os03g0286200