Os03g0294900

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Revision as of 12:34, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0294900| Description = Similar to Ubiquitin-activating enzyme E1 3| Version = NM_001056356.1 GI:115452440 GeneID:4332529| Length = 6439 bp|...")
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Gene Name

Os03g0294900

Description

Similar to Ubiquitin-activating enzyme E1 3

Version

NM_001056356.1 GI:115452440 GeneID:4332529

Length

6439 bp

Definition

Oryza sativa Japonica Group Os03g0294900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:10349634..10356072

Sequence Coding Region

10349917..10350513,10351149..10351581,10351749..10352617,10352698..10353492,10354189..10354406
,10355508..10355790

Expression

GEO Profiles:Os03g0294900

Genome Context

<gbrowseImage1> name=NC_008396:10349634..10356072 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:10349634..10356072 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcttccgacgaagagagcgaacggcgctgaggctgagagcagcagcgacgcgccggcgaagaaggcgcgggtaggggcatcggcgtcggaggcggaggcgatggtggctggggaggcgggcggcggtgggggtggggtgagcggcaatgggagcgaggtggcggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgcggcggctcttcgcgtccaacgtcctcgtctccggactgaacgggcttggggctgagattgcgaagaatcttgctttagcgggtgttaagtctatcaccctacatgatatgggaaatgtggaaatgtgggacttatcaggcaatttcttcctatctgaagatgatattggaaagaatagggctgttgcttgcactgcaaagctgcaagaactcaacaatgctgttcttatatctactctgacagaagatctgaccaatgaacacctctcaaagtttcaggctgttgttttcactgacataagtctagacaaggcgtttgaatttgatgattattgtcgtaaccaccagccttcaatttcttttatcaaagcagaagtttgtggtctttttggtagtgtattttgtgactttgggcctaagtttaccgttctggatgttgatggtgaagaaccacatactggtataattgcatccatcagcaatgacaatcctgcaatgatatcctgcgttgatgatgagcgccttgaattccaagatggtgatcttgttgtcttctcagaggtccaagggatgacagaactaaatgatggcaagccaaggaagataataaatgcaaggccatattcattttgcatccaggaggatacaagtaaatttggtatttatgcaaaaggtggaattgttactcaggtgaaagagccgatcaacttagagttcaagagtctcagagattctataagagaaccagggaatttccttttgagcgatttctcaaagtttgaccgtcctcctcttctgcacttcgcatttctagctttggataagttcaggaaagaatttgggcgctttcctggtgctggctgtgaccaagatgctcaaaggtttattgagtttgttgcttctgtcaatgaagctacaattgattacaagatggatgagcttgatgggaagttgttacgaaattttgcaagtggttctagagctgttctaaacccaatggctgcgatgtttggtggcattgtcggccaagaagttgttaaggcatgctctgggaaatttcatcctcaataccagttcttttattttgattcagcggaatctctaccaacctatccattggactcaaaagacttgaaaccattgaatagccgctatgatgctcagatatctgtttttggttctaagcttcagaaaaagatgagagatgccaatgtttttgttgtgggatctggtgctcttgggtgtgaattcttgaagaatcttgctttaatgggagtatcttgtggccttaaaggaaagctaactataacagatgatgatatcattgagaaaagcaacttgagccgccaatttctgtttcgtgattggaatattgggcaggctaaatctactgtagcagctgcagcggctagtgctatcaactccagcctgcatattaatgctcttcagaatcgtgcctgtccagagactgagcatgtgttccatgacaaattctgggagggccttgatgtcatcatcaatgcacttgataatgttaatgctaggatgtacatggatatgagatgcttgtacttccagaaaccacttttggaatctggaacattgggtccaaaatgcaatacacaaatggtaattcctcaccttactgaaaactatggagcatcccgagaccctcctgagaaacaggcaccaatgtgcacagtccactctttcccacacaatattgaccactgtctgacatgggctcgttcagagtttgagggtttgctagagaaaactccaaatgaagtgaactcttttatttccaatccagctcaatatgctgctgctatgagaaaggcaggtgatgctcaagcaagggaattgctcgagcgtgtttgtgaatgccttgacaaggagcgatgtgatggatttgaagattgcattgcctgggctagactgaaatttgaagactacttcgctaatcgtgtgaagcagctaacattcacatttcctgaagatgcggtcactagcacgggtgcttttttctggtctgcccccaaacggtttcctcgcccactgcaattctctactgtgaattcatctcacattcacttcatactggctgcttccatattgagagcagtgtcattcgggatctccatacccgactgggcaaagaacacaagtaatctggtcgatgctgttagtaaggttgtagtgcctgaatttgaaccgaagagtggggttaagattgagacagatgagaaagcttctaacatctctagtgcttctgttgatgatgcttctgttattgaagatcttttaaccaagctggaagcatctgcaaaaaaattacctcctggattccagatgaaggctattcagtttgagaaggatgatgacacaaacttccacatggatttaattgctgggcttgcaaatatgcgtgcaaggaactatggtattcaagaggtcgacaagctgaaggcgaagttcattgcaggaagaatcattccggcgatcgcaacttcgacagccatggcaacaggacttgtgtgccttgagctttacaaggttctggctggtgggcaccccgtcgaagactaccgcaattcgtttgctaacttggcaataccaatgttctccatggctgaacctcttccacccaaggtgatcaagcatcaagacatgagatggaccatatgggatcggtggtctatcgagggcaacatcactgtcgcagaactcctcaagtggctgagtgacaagggcctgagcgcgtacagtgtctcctgcggcacttcattgctttacaacaccatgtttccgagacacaaggatcgagtgaacaagaagctcgtggatgtcgccaaggaggtggcgaaggtggacgttccggcatacaggaggcacctggatgtcgtcgttgcctgtgaagatgatgatgggaatgacgtcgacatccctctcatctccatttacttccggtag</cdnaseq>

Protein Sequence

<aaseq>MLPTKRANGAEAESSSDAPAKKARVGASASEAEAMVAGEAGGGG GGVSGNGSEVAEIDEDLHSRQLAVYGRETMRRLFASNVLVSGLNGLGAEIAKNLALAG VKSITLHDMGNVEMWDLSGNFFLSEDDIGKNRAVACTAKLQELNNAVLISTLTEDLTN EHLSKFQAVVFTDISLDKAFEFDDYCRNHQPSISFIKAEVCGLFGSVFCDFGPKFTVL DVDGEEPHTGIIASISNDNPAMISCVDDERLEFQDGDLVVFSEVQGMTELNDGKPRKI INARPYSFCIQEDTSKFGIYAKGGIVTQVKEPINLEFKSLRDSIREPGNFLLSDFSKF DRPPLLHFAFLALDKFRKEFGRFPGAGCDQDAQRFIEFVASVNEATIDYKMDELDGKL LRNFASGSRAVLNPMAAMFGGIVGQEVVKACSGKFHPQYQFFYFDSAESLPTYPLDSK DLKPLNSRYDAQISVFGSKLQKKMRDANVFVVGSGALGCEFLKNLALMGVSCGLKGKL TITDDDIIEKSNLSRQFLFRDWNIGQAKSTVAAAAASAINSSLHINALQNRACPETEH VFHDKFWEGLDVIINALDNVNARMYMDMRCLYFQKPLLESGTLGPKCNTQMVIPHLTE NYGASRDPPEKQAPMCTVHSFPHNIDHCLTWARSEFEGLLEKTPNEVNSFISNPAQYA AAMRKAGDAQARELLERVCECLDKERCDGFEDCIAWARLKFEDYFANRVKQLTFTFPE DAVTSTGAFFWSAPKRFPRPLQFSTVNSSHIHFILAASILRAVSFGISIPDWAKNTSN LVDAVSKVVVPEFEPKSGVKIETDEKASNISSASVDDASVIEDLLTKLEASAKKLPPG FQMKAIQFEKDDDTNFHMDLIAGLANMRARNYGIQEVDKLKAKFIAGRIIPAIATSTA MATGLVCLELYKVLAGGHPVEDYRNSFANLAIPMFSMAEPLPPKVIKHQDMRWTIWDR WSIEGNITVAELLKWLSDKGLSAYSVSCGTSLLYNTMFPRHKDRVNKKLVDVAKEVAK VDVPAYRRHLDVVVACEDDDGNDVDIPLISIYFR</aaseq>

Gene Sequence

<dnaseqindica>5560..6156#4492..4924#3456..4324#2581..3375#1667..1884#283..565#tatatactcttctccgccggcatagcatccaagccgaagggaagggaagggaagaggcaaggcacaaccatccacagggtggcggcgccgcgcggagcgaatccctagccgccaccttccgatcgcccgcatccggatcggtctccgttcttcgatccgtactctgctccgatcgccatttcctggttcttcctgggggttttgtttttttttttgagttttcttttggatgtttgattcgattcggtggtggcgatcgatgcaggtggtccgtcgcgctatatgcttccgacgaagagagcgaacggcgctgaggctgagagcagcagcgacgcgccggcgaagaaggcgcgggtaggggcatcggcgtcggaggcggaggcgatggtggctggggaggcgggcggcggtgggggtggggtgagcggcaatgggagcgaggtggcggagatcgacgaggacctgcacagcaggcagctcgccgtgtacgggagggagacgatgcggcggctcttcgcgtccaacgtcctcgtctccggactgaacgggcttggggctgagattggtatgtgtctccctcgatttctgatctggatatttaattgatactcgcttagtagtactttgttggtgtgatgttgcttacagttagttttgctgaagtttaatctgtttgatgtttttattgtcatgtggattattttggtgcatcacaacatatttagcaatgcaatgcgcaggcatgttagatttgttgcactgatgaataaaatttggatgttgtttctcatcggtagacagtacagagaagcaaactaagtgatggccttagattgcgcatttgaattgagtttcaggtggaacttacaggaatgtggatgctgttgttgttactttctatttgcggatttggggacattttgttgcttaaacctttaagggcccgactgtttttattccgtaaatcttgtttggtgttctttatgggtgtaggatgtatgtacattgatagctctatatgttcacgattaaaaaggcaggaacaccactactgacatctggttgctttgctgctatgaaaactctgaccaatgccaggctgctggtttctttggtgatactacctgatgttagtacttagtactttgagttcgaattacgatttttttagacttgtccattggctaggtttgggtgttaaaatggacagatggctagtcctaagccggatatgtaccattcagctttggcagcgagacaggaaataatttgatccagctgccttggatatatttgttttgatgctggcatttggctacccttgctcccccagttaaatagtatctgttagttttattgggattgcttttttgttcaaaacatttgtcctctcatgaaattgaaatcgaggtctattccattttcccgttcctgccactattataaagtttgagacatgtattgatgtaccagattgatgaattataatttttccttgggaagtaacatggccattaatgtgtggctatattcttcgtatgtacgtgcacacatgctaatgcttgcgtggcttgttgttattggtatggtattatcataactttattatgacatgtgtctatgtggtttgtgtgatctttgaaactaacaatcttttcccatacagcgaagaatcttgctttagcgggtgttaagtctatcaccctacatgatatgggaaatgtggaaatgtgggacttatcaggcaatttcttcctatctgaagatgatattggaaagaatagggctgttgcttgcactgcaaagctgcaagaactcaacaatgctgttcttatatctactctgacagaagatctgaccaatgaacacctctcaaagtttcaggtctgttaacttttcactatgataaaatctggtacttccataaactccacaggttgcaaatctacctttatttttctgtgaattctgcttgaagtgacatggaaagttattatttagttttgtatggtgaagttaatctcggttttacatggtaaaaggttactgaactcacactggtcttttggatgatcctctatttttctggaccctggtctacttttctaggcctactgtagtatttttgattcaattgtacaccctccgccccgtaaaaaccaaacctagtaagggatgtgacacatcctagtactacgaatctagatagagtactacgaatctagatagaggcgtatccagattcgtggtattagtatgtgtcacatcacgtactaggtttgttttttatgggatggagggagtatgtgacatggatgatgtgacaatctatataactagcactatctattcaagtgacctgaatgtgagctattaataaaccttttatgactgaagcaaatattttgctaacgctacactgcctacacagttggctgtcaccacataactttgttgttcgtagtattgctattaatctttggtttgcactgtgtaattttgattaaacatccctgtgtttaccagctattatacaagatatgtttatgtactaaacatgcttctggttttgatttacaggctgttgttttcactgacataagtctagacaaggcgtttgaatttgatgattattgtcgtaaccaccagccttcaatttcttttatcaaagcagaagtttgtggtctttttggtagtgtattttgtgactttgggcctaagtttaccgttctggatgttgatggtgaagaaccacatactggtataattgcatccatcagcaatgacaatcctgcaatgatatcctgcgttgatgatgagcgccttgaattccaagatggtgatcttgttgtcttctcagaggtccaagggatgacagaactaaatgatggcaagccaaggaagataataaatgcaaggccatattcattttgcatccaggaggatacaagtaaatttggtatttatgcaaaaggtggaattgttactcaggtgaaagagccgatcaacttagagttcaagagtctcagagattctataagagaaccagggaatttccttttgagcgatttctcaaagtttgaccgtcctcctcttctgcacttcgcatttctagctttggataagttcaggaaagaatttgggcgctttcctggtgctggctgtgaccaagatgctcaaaggtttattgagtttgttgcttctgtcaatgaagctacaattgattacaagatggatgagcttgatgggaagttgttacgaaattttgcaagtggttctagagctgttctaaacccaatggctgcgatgtttggtggcattgtcggccaagaagttgttaaggcatgctctgggaaatttcatcctcaataccaggtgcattttatgaactgtaaactcttttatggctgaagtaaatatgttgtttttgtctgatataactcttgtctttgcagttcttttattttgattcagcggaatctctaccaacctatccattggactcaaaagacttgaaaccattgaatagccgctatgatgctcagatatctgtttttggttctaagcttcagaaaaagatgagagatgccaatgtttttgttgtgggatctggtgctcttgggtgtgaattcttgaagaatcttgctttaatgggagtatcttgtggccttaaaggaaagctaactataacagatgatgatatcattgagaaaagcaacttgagccgccaatttctgtttcgtgattggaatattgggcaggctaaatctactgtagcagctgcagcggctagtgctatcaactccagcctgcatattaatgctcttcagaatcgtgcctgtccagagactgagcatgtgttccatgacaaattctgggagggccttgatgtcatcatcaatgcacttgataatgttaatgctaggatgtacatggatatgagatgcttgtacttccagaaaccacttttggaatctggaacattgggtccaaaatgcaatacacaaatggtaattcctcaccttactgaaaactatggagcatcccgagaccctcctgagaaacaggcaccaatgtgcacagtccactctttcccacacaatattgaccactgtctgacatgggctcgttcagagtttgagggtttgctagagaaaactccaaatgaagtgaactcttttatttccaatccagctcaatatgctgctgctatgagaaaggcaggtgatgctcaagcaagggaattgctcgagcgtgtttgtgaatgccttgacaaggagcgatgtgatggatttgaagattgcattgcctgggctagactgaagtatgatctattgtctctatacactcatcttttagtggatccaataattaatttttttattgtttcactttccattttagctacatgagtatgattttggcttaaatatataatccaacaaactcccttcaaatgcaatgcaataacatatcctttgttttgaccagatttgaagactacttcgctaatcgtgtgaagcagctaacattcacatttcctgaagatgcggtcactagcacgggtgcttttttctggtctgcccccaaacggtttcctcgcccactgcaattctctactgtgaattcatctcacattcacttcatactggctgcttccatattgagagcagtgtcattcgggatctccatacccgactgggcaaagaacacaagtaatctggtcgatgctgttagtaaggttgtagtgcctgaatttgaaccgaagagtggggttaagattgagacagatgagaaagcttctaacatctctagtgcttctgttgatgatgcttctgttattgaagatcttttaaccaagctggaagcatctgcaaaaaaattacctcctggattccagatgaaggctattcagtttgagaaggttagttacttagtttttttggtagcttctttgtgagctgttaagacatttgttaagacattctttggtacaaagttcattatttgaaagtgtttccacgctgggaaacaactgattttctgtggatatcaactgatgaaaaaattcacacctgataagcaaaatatcaacaagacattgccatgtgctttgtactgaatcatacagcttagttgccatatcagtttccttcttcccttgttaatagtaatccattcttgacttctgcccttccccgtagaaaaagagatccagtcagcatttttggagagaatgagagtcatttatcccttacacattagcttttagtctgtttgatttactggcatctaataaatatatgtggttttcctacctaaaagggctgttgttgggtgtgatatgcgctttattaacttacctcattatttttggtgtgaagcatgaattagacatttcatgtttttttaaccaggggcatttctcggttcacaagccatgaaatttgcatattttataggcatttctgtcaaaactttctaggtttgtgtaataaagaaaacactccatgaacagaagtgattggttttgcttatacatcatacattgttttacaggatgatgacacaaacttccacatggatttaattgctgggcttgcaaatatgcgtgcaaggaactatggtattcaagaggtcgacaagctgaaggcgaagttcattgcaggaagaatcattccggcgatcgcaacttcgacagccatggcaacaggacttgtgtgccttgagctttacaaggttctggctggtgggcaccccgtcgaagactaccgcaattcgtttgctaacttggcaataccaatgttctccatggctgaacctcttccacccaaggtgatcaagcatcaagacatgagatggaccatatgggatcggtggtctatcgagggcaacatcactgtcgcagaactcctcaagtggctgagtgacaagggcctgagcgcgtacagtgtctcctgcggcacttcattgctttacaacaccatgtttccgagacacaaggatcgagtgaacaagaagctcgtggatgtcgccaaggaggtggcgaaggtggacgttccggcatacaggaggcacctggatgtcgtcgttgcctgtgaagatgatgatgggaatgacgtcgacatccctctcatctccatttacttccggtaggtaggatcattcctgtaaaaaaaaagaggtgaaaatagattgagcattcgtaagtctcttcgtcagttcgctctttctatgcattatttagtagccagtgatcgccgcagtgtgttggttgctcgtggcgattctccttgccgttttatgtgggtgttctccctttgctgttgcatgccgactatttgcaggtgtgcaatgcggccccatctcatggatgttttgttgactgaatgcataatatctgcaattggattgaggtgtttcccactttttgagtccc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0294900, RefSeq:Os03g0294900