Os03g0298400

From RiceWiki
Revision as of 12:34, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0298400| Description = Similar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a)| Version = NM_001056378.1 GI:115452...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os03g0298400

Description

Similar to 26S proteasome subunit 4-like protein (26S proteasome subunit AtRPT2a)

Version

NM_001056378.1 GI:115452484 GeneID:4332553

Length

3643 bp

Definition

Oryza sativa Japonica Group Os03g0298400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:10513170..10516812

Sequence Coding Region

10513192..10513686,10515139..10515384,10515597..10515766,10515900..10516116,10516192..10516332
,10516520..10516603

Expression

GEO Profiles:Os03g0298400

Genome Context

<gbrowseImage1> name=NC_008396:10513170..10516812 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:10513170..10516812 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggcagggcactcccggcgggatggggaagcagggcggcctccccggcgatcgcaagccgggcgacggcggcgccggcgacaagaaggaccgcaagttcgagccccccgccgcgccgtcccgcgtcggccggaagcagcggaagcagaaggggcccgaggcggcggcgcgcctgcccgccgtggcgccgctctccaagtgccgcctccgcttgctcaagctggagcgggtcaaggactacctcctcatggaggaggagttcgtcgtcagccaggagcggctgcgacccagcgaggacaagacggaggaggaccgatccaaggtcgatgacctccggggcacccccatgagcgttggctcgcttgaggagatcatcgatgagagccacgccatcgtctcgtcgtccgtcgggccggaatactatgttggcatattatcattcgtcgacaaggaccagctcgagccagggtgtgccattctgatgcataacaaggttctctctgtggttggaattttgcaagatgaggttgaccctatggtttctgtcatgaaagttgaaaaggcacctttggagtcttatgcggacatcggtggtctggatgcccaaattcaagagattaaagaggctgttgagcttcccttgactcatcctgagctatatgaggacattggaataaggcctcccaagggagtaatattatatggggaacctggcacaggcaaaactctacttgcaaaggcggttgctaattctacatcagcaacatttttgcgtgttgttgggagtgagttgatccaaaagtaccttggtgatggccccaagcttgtaagagaattgtttagggtggctgatgatctttctccgtcaattgtctttattgacgagattgatgcagtcggaacaaagaggtatgatgctcattcgggtggagagcgtgaaattcagagaaccatgttggagttgcttaatcagctggatggttttgattcaaggggagatgttaaagttattttagcaacaaatcgcattgaaagtcttgacccagctttgcttcgacctggtcggatagacagaaagattgaatttccgttaccagatattaaaaccaggaggcggatcttccagatacacacatctaagatgacattggcagatgatgttaacctagaagagtttgtgatgaccaaggatgagttttctggtgctgacatcaaagcaatatgtacggaggccggattgctcgctttaagggagcgcagaatgaaggtgacacatgccgatttcaagaaggccaaagagaaggtcatgttcaagaagaaggaaggtgtaccggaagggctttatatgtga</cdnaseq>

Protein Sequence

<aaseq>MGQGTPGGMGKQGGLPGDRKPGDGGAGDKKDRKFEPPAAPSRVG RKQRKQKGPEAAARLPAVAPLSKCRLRLLKLERVKDYLLMEEEFVVSQERLRPSEDKT EEDRSKVDDLRGTPMSVGSLEEIIDESHAIVSSSVGPEYYVGILSFVDKDQLEPGCAI LMHNKVLSVVGILQDEVDPMVSVMKVEKAPLESYADIGGLDAQIQEIKEAVELPLTHP ELYEDIGIRPPKGVILYGEPGTGKTLLAKAVANSTSATFLRVVGSELIQKYLGDGPKL VRELFRVADDLSPSIVFIDEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGD VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSKMTLADDVNLEE FVMTKDEFSGADIKAICTEAGLLALRERRMKVTHADFKKAKEKVMFKKKEGVPEGLYM </aaseq>

Gene Sequence

<dnaseqindica>23..517#1970..2215#2428..2597#2731..2947#3023..3163#3351..3434#gcgacgcaacccaccggcggcgatggggcagggcactcccggcgggatggggaagcagggcggcctccccggcgatcgcaagccgggcgacggcggcgccggcgacaagaaggaccgcaagttcgagccccccgccgcgccgtcccgcgtcggccggaagcagcggaagcagaaggggcccgaggcggcggcgcgcctgcccgccgtggcgccgctctccaagtgccgcctccgcttgctcaagctggagcgggtcaaggactacctcctcatggaggaggagttcgtcgtcagccaggagcggctgcgacccagcgaggacaagacggaggaggaccgatccaaggtcgatgacctccggggcacccccatgagcgttggctcgcttgaggagatcatcgatgagagccacgccatcgtctcgtcgtccgtcgggccggaatactatgttggcatattatcattcgtcgacaaggaccagctcgagccagggtgtgccattctgatgcataacaaggtattaatgtgtataatttccccttttcctgatggattggttcagtgggattggaagcaccacactaacacatcagtagttcatggtttggtgattgggtcgaaaaggttggttagaactagacttatggaacagactaagaatattcaggtcatggcgggataagaaaaaaaatgaggtgaatatgaccggagcattttctactagtaattatgaatgtttttattggtatggtagagtttcttctgaagaaaaaaaaaaggttaaccatataatgtatgaatggttgtcatggtagagttgcttgcagatggaaaacatttaaacatatatgtacatcaatctagtagcattaaggtattctatgcccacaacccagtagcatttaggtaatctatgcttgacttgtgttgtaggcaatcagatcagatggtgcacattcggtacctgcaaatggtaacagtaaaattataaatatttcgcggacttcttcagaagaaactcaaagtaactatgtttttttttcgttaaatgccagtttttttgtttgcctactggttcctatatgtgatggaggccagtttcaggcttgtactagaatcaccaaattttcttttgaagggcaataaacactttgatggttgagaaagcaaatagtattaatttaatttgactccatttgtatgtaagattgccatatttaagggtcgcggctaccttacatttcagtgggcgatgcatatgcaactcttacaaccttaatttcgaacactgtgggaactctgcatgactaagattaagtattggttgaagattgaatgtcttggaaaagagtgattattatgaacagtgtaatctaatcctttggatgtaatttagtaagtttattttctccatgggagcatttcacttttaggagtgcactgttccttttttgttctgttttttgtctgtcaacaccataatttctttgtagcacaccttttcttatatgtgtctagtgtcttcaattatatccactggaagcatctcccagtctttctcagtttattgccactttggaaatctttgatataatttttattcaatggtgaaattattatggcactgttttgatacaatagacttgaagctttagagcaaggataatattgggctataagccaactataaacttatgtgaggtgagagataaagaaaaatatggagagttggctttcatgcaagagctagctccctctacacatgcttcaagacagatgcattaattttatagggtagaaaaagagaggagaaaaaaaaaagagctaatcttatagctaacctactatacatgttagctctaatatgagcttataaccaatagttggctctactattaaacttgctcttatgctcttttttacttgtgagaagttttttataaccaaacttgataaatcatttcttcaggttctctctgtggttggaattttgcaagatgaggttgaccctatggtttctgtcatgaaagttgaaaaggcacctttggagtcttatgcggacatcggtggtctggatgcccaaattcaagagattaaagaggctgttgagcttcccttgactcatcctgagctatatgaggacattggaataaggcctcccaagggagtaatattatatggggaacctggcacaggcaaaactctacttgcaaaggtttgtctctttttcttaggacattgaagtcttgaattcccatgtttactccatttcaaattcaattcattaataaactagtaacttaataaatgctagttattcatttcatgttcatatttttgcatatgattaaaaaggtgcaaatttgatattatatagctatattttttccttgaaaattcatgaatatctttttgtaattattgcaggcggttgctaattctacatcagcaacatttttgcgtgttgttgggagtgagttgatccaaaagtaccttggtgatggccccaagcttgtaagagaattgtttagggtggctgatgatctttctccgtcaattgtctttattgacgagattgatgcagtcggaacaaagaggtagagtagtgcatacttcaaatgggaagtcttctatatgatgaatgttgtttgtgtatagtaaaagattggtggaacttcccatgaaatagtttatatgagtattgatgaacttttttttttctccttataggtatgatgctcattcgggtggagagcgtgaaattcagagaaccatgttggagttgcttaatcagctggatggttttgattcaaggggagatgttaaagttattttagcaacaaatcgcattgaaagtcttgacccagctttgcttcgacctggtcggatagacagaaagattgaatttccgttaccagatattaaaaccaggaggcggatcttccaggtgcttttctacaatgtttcaagttctgtcttattggaaacctgcttcgttcttatcaatagtttttgggtgcagatacacacatctaagatgacattggcagatgatgttaacctagaagagtttgtgatgaccaaggatgagttttctggtgctgacatcaaagcaatatgtacggaggccggattgctcgctttaagggagcgcagaatgaaggtaactcagctttgttttctcaaccagactccttgctctctagtactgttaatgttaaaactttcgagcatactaagtgccaatcctttcagatctgagtttgagctgcgctcagaacatatttgcatggaatgcaagtctttgttgcacttctctttttacatttgctgttcttctgttgctttaggtgacacatgccgatttcaagaaggccaaagagaaggtcatgttcaagaagaaggaaggtgtaccggaagggctttatatgtgagacatccaccactcatcagcaccagaattacctccaggacacggttaagtgtaatagagaactggtagagctggtgtttggttcaatgttcggagaatgtttgcttacacccttcttattcagcaatgtcgaactaaagaaccccctgaacaatgtatggctaccaggaatgcatgcagttacggttcaatgttaaatgctttttgatc</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0298400, RefSeq:Os03g0298400