Os03g0300200

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Revision as of 12:34, 24 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os03g0300200| Description = Similar to Ubiquitin-specific protease 16| Version = NM_001056390.1 GI:115452508 GeneID:4332566| Length = 4173 bp| ...")
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Gene Name

Os03g0300200

Description

Similar to Ubiquitin-specific protease 16

Version

NM_001056390.1 GI:115452508 GeneID:4332566

Length

4173 bp

Definition

Oryza sativa Japonica Group Os03g0300200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 3

Location

Chromosome 3:10602598..10606770

Sequence Coding Region

10603630..10603797,10604379..10604493,10604679..10604749,10604840..10604997,10605074..10605167
,10605255..10605343,10605899..10605996,10606069..10606202,10606291..10606374
,10606480..10606728

Expression

GEO Profiles:Os03g0300200

Genome Context

<gbrowseImage1> name=NC_008396:10602598..10606770 source=RiceChromosome03 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008396:10602598..10606770 source=RiceChromosome03 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagtccaacgccgagaagcttcgtggtctcaccatcacctcgctggatgaggaagacgacgagcccgaactgccccaccgatccccacccgccagcggcggcggcggaggcggcggcgcgggctacgaggacgacgatgaggaggaggaggaagaggcggaggtgacgcttggttttctggagaagccgaagcacccgggcctcctcctccgccacctgttccctagcaaggccggaggcatcccggcgtggttggatcctgtgaacttgccatcggggaactcgcgttgctgcggcttctgcggcgagcccctgcagttcgtcctccagatatatgcaccgattgaggacaatgcggcatcatttcaccgcactttgttcatgttcatgtgcccgtcaatggcatgcttactccgagaccagcacgaccagtggaaacatagacaaggcaatccgtgtagaagcgtgaaggttttccggtgccagcttccccgtagtaatgccttctactcaagtgaaccaccaaagcacaatgattctgacaagccactatgtccaggagctcctgtctgccattggtgcggtacatggaaaggtgataaactctgtagtagctgcaagaaagcacgctactgctctgagaagcatcagacactgcactggcgctctggccataagagtgattgcctacagttaatcagttcttctgaagcttcaagctctatttttcctgctgtaggaaaagttcctgctagcaaatcttggccagaatatgagattgcaatcgactatgagggtgctttcaattctgacagttgtgatgagagtaactcaaagtccttggtgatgcaaagacctggtaaaccagatgatatgatgcagtcatggatggatcaatttgaggctgatgctgacaacaaatgctgggcgtcttttcaagagcgggtctcaagagcaccaaagcaagtattgagatactgtcgagaagagaatgccaaacctctatgggcgttatcggctggttgtccatcaaatgccgatatcccatcatgtagctactgtagaggtccactatgctatgaatttcagataatgccacagctgctttattactttggtgtgaaaaatgagccagactctcttgattgggcaacaattgttgtgtacacatgtaaaggatcatgcgatcaaaatgtcagctacaaggaggaatttgcatgggttcagttataccctacaacaaccacaaggtcatga</cdnaseq>

Protein Sequence

<aaseq>MESNAEKLRGLTITSLDEEDDEPELPHRSPPASGGGGGGGAGYE DDDEEEEEEAEVTLGFLEKPKHPGLLLRHLFPSKAGGIPAWLDPVNLPSGNSRCCGFC GEPLQFVLQIYAPIEDNAASFHRTLFMFMCPSMACLLRDQHDQWKHRQGNPCRSVKVF RCQLPRSNAFYSSEPPKHNDSDKPLCPGAPVCHWCGTWKGDKLCSSCKKARYCSEKHQ TLHWRSGHKSDCLQLISSSEASSSIFPAVGKVPASKSWPEYEIAIDYEGAFNSDSCDE SNSKSLVMQRPGKPDDMMQSWMDQFEADADNKCWASFQERVSRAPKQVLRYCREENAK PLWALSAGCPSNADIPSCSYCRGPLCYEFQIMPQLLYYFGVKNEPDSLDWATIVVYTC KGSCDQNVSYKEEFAWVQLYPTTTTRS</aaseq>

Gene Sequence

<dnaseqindica>2974..3141#2278..2392#2022..2092#1774..1931#1604..1697#1428..1516#775..872#569..702#397..480#43..291#gccgaacacgcacgcatttttgcccccacgccgccgccgaggatggagtccaacgccgagaagcttcgtggtctcaccatcacctcgctggatgaggaagacgacgagcccgaactgccccaccgatccccacccgccagcggcggcggcggaggcggcggcgcgggctacgaggacgacgatgaggaggaggaggaagaggcggaggtgacgcttggttttctggagaagccgaagcacccgggcctcctcctccgccacctgttccctagcaaggccggaggcatcccggtgcgtacggattgcacgcgtttttgatgaacttcactcgctaaattggtacaattcgtcgaccaggtgttgatgttgtggtttgtgtgaattgctgtattgcaggcgtggttggatcctgtgaacttgccatcggggaactcgcgttgctgcggcttctgcggcgagcccctgcagttcgtcctccaggtgtttgctttgtggatagtgcagttgtagctgactacttgttgtttgggtgtgaaatcaatcacaaataggattcaattttgtgcagatatatgcaccgattgaggacaatgcggcatcatttcaccgcactttgttcatgttcatgtgcccgtcaatggcatgcttactccgagaccagcacgaccagtggaaacatagacaaggcaatccgtgtagaaggtgaattgaagttctacagctgttttgctaatagcctattgttgtgctgattttgactgctgtgggttacagcgtgaaggttttccggtgccagcttccccgtagtaatgccttctactcaagtgaaccaccaaagcacaatgattctgacaagccactatgtccaggaggtagttttcttttcttctttggatggcagcttggcattcctttccatgtttggtctttttcttaatgattctaagtatcaaaatgatgtgtttcctgcattatgtgtatggatcatcggtcctcacttatctagctgttgtataaatatctgattgataatgacttgtgacttgatcgaatcttccatgtgataaattcttaaagcttcatcctcattattttttctactgttgcaaaaacttttctcagcatgtcaggtactgcctacattatgttctaaagttaataagcatttcttctgtttttcccagcttttttttggtctagataatcattctgttcatttgcagagaccctgtgtaagatttatgtgttatgctagttgctgaattttcttgtgtgacatgctttcataggcaacatttttctttttcagccttgttaaactgttttaacttttattaataggtggccatttttcatggttgaactctttgttttaattgatagtcaaataatatagatttctttcaattattcaactatgctgtcagctcctgtctgccattggtgcggtacatggaaaggtgataaactctgtagtagctgcaagaaagcacgctactgctctgagaagcatcaggtatttataagtcattttcccgctaatcgttaatctatatatgccctaaagcatgctttgttgaactattttttttctatttgtcagacactgcactggcgctctggccataagagtgattgcctacagttaatcagttcttctgaagcttcaagctctatttttcctgctgtaggaaaaggtgattgtatttgagtgcttgataagcttgtaaacattgaatcatatctcttttttatagtttcatctctttgcagttcctgctagcaaatcttggccagaatatgagattgcaatcgactatgagggtgctttcaattctgacagttgtgatgagagtaactcaaagtccttggtgatgcaaagacctggtaaaccagatgatatgatgcagtcatggatggatcaatttgaggttttaaccctacatcctctctctctctcttttcttttttttttcttatctgttcatctttgtttttgttaaccactattatttttgtaggctgatgctgacaacaaatgctgggcgtcttttcaagagcgggtctcaagagcaccaaagcaagtattgaggtgagattgcatcagttgcttggattcttttttatatttggtggtatactgatcagcctttgcctggtcagaatagtagcattgtgtagttaatgttctaattagccttttttagtgcccttgcatatttttttctcaaaatattatgttacaggaatttgaataaacttgcttacattatgcagatactgtcgagaagagaatgccaaacctctatgggcgttatcggctggttgtccatcaaatgccgatatcccatcatgtagctactgtagaggtccactatgctatgaatttcaggttggtcttttttttttctggggcaaattccgtcactgaaatatagtgggtatacacttatatccagttgcacattgcaacacaagtaataaatttgcaaaccctactccctcatgccaaatatcttgcccttatatctttgctgtatgaattattcgctgggtacatactgtgcatattgtcagacaccaatgcatcaattttagagtcaagacccaaaagttaatggctgctagctcaactgcctgttaaccagttgtgataccaggccagactgagccaagatatacccgacggtggctctttgttattactggcttgtgctggtatccaataaaccatggcttagtgggaattcataccctgctcaaaatagtactgtaaatgagattatcaaatacttctgcagcctttatgttgagtttggtattttctttcaaatcccatcagttcaaattatttcttctacttagtcagtgaagacctaccatccctaaggtgtacgacagtaaggggcaaacaggcacccaccccctttttcacacagacatgcttacatatcacactaatttgtactgcagataatgccacagctgctttattactttggtgtgaaaaatgagccagactctcttgattgggcaacaattgttgtgtacacatgtaaaggatcatgcgatcaaaatgtcagctacaaggaggaatttgcatgggttcagttataccctacaacaaccacaaggtcatgataatgtttatggtttatttgcccccacagagtaagctttgtaatggcctacaggtgcggaacatctccatttgttttctccgttgaacgctaataatcactctgtgtattttcctcaagtcttaatgtaggcttagcaattcatgaacaaggacaaatttgcatgtttgtgcgtttcctctgtttactgtttgttcgctgtgaactgtaaaatattgtatcagaaatgcgattagtttcatctaatgcaccatgatgatagactttggtgataggatgttccagaaagtgagaactgactgcacgaagcccaatcttttacattttcctaaaactactgaagtagcaattcttgcagtaaaaatgtatatttttgttacattttggtccatttgtcatgtgtggacgctattgctgattagcagtatgggttcagacttgtgtattttgcggtgatcactgaattcacggcttctctgtcatatacatctgcattgaatggccttgttgctttcaataacaattcgtccaaaaataaatccatgaatattttctcatgtgacattttccttaagctgatagcccagttggttggtccctctgcctggtattatgctggataggttcgttttagctggcgtgtaccttgtggctgtgctagtctgcactatgctaatgataactcctagtgatttaacagcatattctcttgtgttgatagggagctggctgagatcatctgcactcatttttgacgtgaagtcgggagctcaactgatcaagacgagatagatttgttttcctctactggggattttttagtggggtgtggtttcgatgattccaggtcagttggtcgtgcaatgttgagcagcgtagggccgtggtcccaaatgctttgtgctcgctacattggctttgatctgctagaccactagggcccatttagcgcatttgataacaaatatatgtgttccttgtggtcaccaccgtgcttggtttagtatatctttagtgttcgttaagaatcttt</dnaseqindica>

External Link(s)

NCBI Gene:Os03g0300200, RefSeq:Os03g0300200